Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

20343121 .. 20345780

Gene Structure 2660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATCGCCATCTCGCGCAGTCAGCCTTCACTTCTCTCCCTACGCGCACTCAACCGGATGAGGTTGATCTTCCGCTTACCACACAAGTCAAACCGGAGCCAGGCTCCAACAAGAACCCGAGTCCAACACCACCACCCATCATCTCCGCCTCCACGCACATACCTCAAGATCATCTCGGCGCTGCTCCCGAAATCCTTCGATCACCAGCCACAAGAACGAGCTCAAGTCGCTACTAGAACCGGAGGTCCTGCTGCCAAACAGCTTGCAGACCGACGCAGCAGCAAATTGGTTAAGGCCTTCAAACGATGCTCGATGCCATCACCTTCGGTGTCATCGTCCTCGTGTAGCTTCTTCACTTCTCTCTCTCGTTTTTACCAAGATGAGGAGGATTGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.03

Weight (kDa)

11.56

Isoelectric Point (pI)

80.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	16, 45
AciI	CCGC	2 cut(s)	73, 146
AfiI	CCNNNNNNNGG	2 cut(s)	100, 382
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	3 cut(s)	221, 262, 348
AluI	AGCT	3 cut(s)	221, 262, 348
Alw21I	GWGCWC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	4 cut(s)	181, 251, 276, 279
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	4 cut(s)	18, 47, 181, 396
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	194, 312
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	4 cut(s)	168, 238, 288, 291
BccI	CCATC	3 cut(s)	17, 145, 325
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	2 cut(s)	182, 397
BisI	GCNGC	4 cut(s)	182, 252, 277, 280
BlsI	GCNGC	4 cut(s)	183, 253, 278, 281
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	98, 105
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	296, 303
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpuEI	CTTGAG	2 cut(s)	149, 207
BsaBI	GATNNNNATC	1 cut(s)	8
BsaWI	WCCGGW	3 cut(s)	54, 93, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 382
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	100, 382
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	168, 238, 288, 291
Bsh1236I	CGCG	2 cut(s)	16, 45
BshFI	GGCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	55, 94, 240
BslI	CCNNNNNNNGG	2 cut(s)	100, 382
BsnI	GGCC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	4 cut(s)	3, 66, 168, 199
BspACI	CCGC	2 cut(s)	73, 146
BspANI	GGCC	1 cut(s)	296
BspFNI	CGCG	2 cut(s)	16, 45
BspLI	GGNNCC	2 cut(s)	98, 105
BssMI	GATC	4 cut(s)	3, 66, 168, 199
BssSI	CACGAG	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	2 cut(s)	16, 45
BstH2I	RGCGCY	2 cut(s)	182, 397
BstHHI	GCGC	4 cut(s)	18, 47, 181, 396
BstKTI	GATC	4 cut(s)	6, 69, 171, 202
BstMBI	GATC	4 cut(s)	3, 66, 168, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 227
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	2 cut(s)	16, 45
BstV1I	GCAGC	4 cut(s)	168, 238, 288, 291
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	4 cut(s)	18, 47, 181, 396
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	282
CviJI	RGCY	8 cut(s)	25, 99, 104, 208, 221, 262, 296, 348
CviKI_1	RGCY	8 cut(s)	25, 99, 104, 208, 221, 262, 296, 348
DpnI	GATC	4 cut(s)	5, 68, 170, 201
DpnII	GATC	4 cut(s)	3, 66, 168, 199
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	223
FaiI	YATR	1 cut(s)	160
Fnu4HI	GCNGC	4 cut(s)	182, 252, 277, 280
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	4 cut(s)	182, 252, 277, 280
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	4 cut(s)	17, 46, 180, 395
GluI	GCNGC	4 cut(s)	182, 252, 277, 280
HaeII	RGCGCY	2 cut(s)	182, 397
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	3 cut(s)	55, 94, 240
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	4 cut(s)	18, 47, 181, 396
Hin6I	GCGC	4 cut(s)	16, 45, 179, 394
HinP1I	GCGC	4 cut(s)	16, 45, 179, 394
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	3 cut(s)	55, 94, 240
HphI	GGTGA	2 cut(s)	194, 312
Hpy188III	TCNNGA	2 cut(s)	166, 187
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	4 cut(s)	36, 205, 307, 333
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 227
HspAI	GCGC	4 cut(s)	16, 45, 179, 394
Kzo9I	GATC	4 cut(s)	3, 66, 168, 199
LmnI	GCTCC	3 cut(s)	96, 109, 189
LpnPI	CCDG	7 cut(s)	68, 86, 107, 113, 218, 253, 261
Lsp1109I	GCAGC	4 cut(s)	168, 238, 288, 291
LweI	GCATC	2 cut(s)	296, 303
MaeI	CTAG	1 cut(s)	234
MalI	GATC	4 cut(s)	5, 68, 170, 201
MboI	GATC	4 cut(s)	3, 66, 168, 199
MboII	GAAGA	2 cut(s)	61, 343
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	131, 148
MnlI	CCTC	7 cut(s)	54, 159, 173, 236, 349, 376, 379
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	291
MspI	CCGG	3 cut(s)	55, 94, 240
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	16, 45
MwoI	GCNNNNNNNGC	2 cut(s)	22, 227
NdeII	GATC	4 cut(s)	3, 66, 168, 199
NlaIV	GGNNCC	2 cut(s)	98, 105
NmeAIII	GCCGAG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	183, 253, 278, 281
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	98, 105
PspPI	GGNCC	1 cut(s)	245
PspPPI	RGGWCCY	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	4 cut(s)	182, 252, 277, 280
Sau3AI	GATC	4 cut(s)	3, 66, 168, 199
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	7 cut(s)	65, 165, 223, 247, 264, 325, 350
SfaNI	GCATC	2 cut(s)	296, 303
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	164, 222
SmoI	CTYRAG	2 cut(s)	164, 222
Sse9I	AATT	1 cut(s)	284
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	2 cut(s)	73, 146
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	223
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	99
TaqI	TCGA	2 cut(s)	198, 311
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseI	GCWGC	4 cut(s)	181, 251, 276, 279
VpaK11BI	GGWCC	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.