Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

56757391 .. 56760964

Gene Structure 3574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCTCGAACTCGCACACTATAGTAGGGATGAGCTTTCGTCCTCGCATGCCCGTAGGGCCGACCCAACCATGCTAGCCCCTAGCAACCTTCACTCTCTCTCCCTACACGCACTCAACCGGAGGAGGTTAATCGCCTTTGACCACACAAGTCGAACCGGAGCCAAGCTCCAATGGGAGCCCGAGTCCAACACCACCACCCATCACCTCCGCCTCCACACACATACCTCAAGATCATCTCGGCGCTACTCCCGGAATCCTTCGATCACCAGCCACTGTTTCACAAATCGGGATGGTGGATCAAAAGGGACTTTCGGATGTGATCTTGGAAGTGTGATGTTAGAATCCAATGTCCATCTTTCGGCACAAAGAAGAGGAAAGGAGGGGCTCGAGCTGCAGCGGTGGATTGAAGGAATGGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

140

Amino Acids

15.84

Weight (kDa)

10.25

Isoelectric Point (pI)

65.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	208, 397
AclWI	GGATC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	407
AluBI	AGCT	3 cut(s)	34, 166, 391
AluI	AGCT	3 cut(s)	34, 166, 391
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	273
Ama87I	CYCGRG	2 cut(s)	179, 386
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	391, 394
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	194, 256
AsuNHI	GCTAGC	1 cut(s)	73
AvaI	CYCGRG	2 cut(s)	179, 386
BanII	GRGCYC	2 cut(s)	180, 387
BbvI	GCAGC	2 cut(s)	378, 406
BccI	CCATC	3 cut(s)	207, 284, 360
BcnI	CCSGG	1 cut(s)	250
BfaI	CTAG	2 cut(s)	74, 81
BfmI	CTRYAG	2 cut(s)	19, 392
BfoI	RGCGCY	1 cut(s)	244
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	392, 395
BlsI	GCNGC	2 cut(s)	393, 396
Bme1390I	CCNGG	1 cut(s)	250
BmeT110I	CYCGRG	2 cut(s)	179, 386
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	160, 177
BmrFI	CCNGG	1 cut(s)	250
BmtI	GCTAGC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	250
BsaWI	WCCGGW	2 cut(s)	117, 155
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseGI	GGATG	3 cut(s)	34, 295, 320
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	378, 406
BshFI	GGCC	1 cut(s)	59
BsiHKCI	CYCGRG	2 cut(s)	179, 386
BsiSI	CCGG	3 cut(s)	118, 156, 250
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	2 cut(s)	179, 386
Bsp1286I	GDGCHC	2 cut(s)	180, 387
Bsp143I	GATC	4 cut(s)	230, 261, 296, 319
BspACI	CCGC	2 cut(s)	208, 397
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	160, 177
BspMAI	CTGCAG	1 cut(s)	396
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	304
BssMI	GATC	4 cut(s)	230, 261, 296, 319
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	48, 75
BstF5I	GGATG	3 cut(s)	34, 295, 320
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	4 cut(s)	233, 264, 299, 322
BstMBI	GATC	4 cut(s)	230, 261, 296, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 391
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	2 cut(s)	19, 392
BstV1I	GCAGC	2 cut(s)	378, 406
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	34, 295, 320
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	48, 75
CaiI	CAGNNNCTG	1 cut(s)	273
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	2 cut(s)	47, 70
CviJI	RGCY	9 cut(s)	34, 59, 77, 161, 166, 178, 270, 385, 391
CviKI_1	RGCY	9 cut(s)	34, 59, 77, 161, 166, 178, 270, 385, 391
DpnI	GATC	4 cut(s)	232, 263, 298, 321
DpnII	GATC	4 cut(s)	230, 261, 296, 319
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	180, 387
Eco88I	CYCGRG	2 cut(s)	179, 386
EcoT38I	GRGCYC	2 cut(s)	180, 387
FaeI	CATG	2 cut(s)	50, 73
FaiI	YATR	4 cut(s)	21, 48, 71, 222
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	46, 69
Fnu4HI	GCNGC	2 cut(s)	392, 395
FokI	GGATG	3 cut(s)	41, 302, 327
FriOI	GRGCYC	2 cut(s)	180, 387
Fsp4HI	GCNGC	2 cut(s)	392, 395
FspBI	CTAG	2 cut(s)	74, 81
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	392, 395
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	3 cut(s)	118, 156, 250
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	50, 73
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	182, 253, 341
HpaII	CCGG	3 cut(s)	118, 156, 250
HphI	GGTGA	2 cut(s)	194, 256
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	228, 287
HpyAV	CCTTC	3 cut(s)	98, 267, 401
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 391
Hsp92II	CATG	2 cut(s)	50, 73
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	230, 261, 296, 319
LmnI	GCTCC	3 cut(s)	158, 171, 175
LpnPI	CCDG	4 cut(s)	131, 169, 263, 280
Lsp1109I	GCAGC	2 cut(s)	378, 406
MaeI	CTAG	2 cut(s)	74, 81
MalI	GATC	4 cut(s)	232, 263, 298, 321
MboI	GATC	4 cut(s)	230, 261, 296, 319
MboII	GAAGA	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	180, 387
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	52, 114, 117, 215, 221, 235, 365, 373
MseI	TTAA	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	3 cut(s)	118, 156, 250
MspR9I	CCNGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	56, 391
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	4 cut(s)	230, 261, 296, 319
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	50, 73
NlaIV	GGNNCC	2 cut(s)	160, 177
NmeAIII	GCCGAG	1 cut(s)	217
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	253, 341
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	393, 396
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	160, 177
PspPI	GGNCC	1 cut(s)	57
PspXI	VCTCGAGB	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	2 cut(s)	392, 395
Sau3AI	GATC	4 cut(s)	230, 261, 296, 319
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	2 cut(s)	180, 387
SetI	ASST	7 cut(s)	36, 90, 128, 168, 207, 227, 393
SfcI	CTRYAG	2 cut(s)	19, 392
Sfr274I	CTCGAG	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	226, 386
SmoI	CTYRAG	2 cut(s)	226, 386
SphI	GCATGC	1 cut(s)	50
SsiI	CCGC	2 cut(s)	208, 397
SspMI	CTAG	2 cut(s)	74, 81
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	4 cut(s)	6, 151, 260, 387
TfiI	GAWTC	2 cut(s)	253, 341
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	2 cut(s)	391, 394
TspRI	CASTG	1 cut(s)	278
XceI	RCATGY	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	386
XspI	CTAG	2 cut(s)	74, 81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.