Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

61881128 .. 61883154

Gene Structure 2027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTTTGGGTCTCTTCCGGACAGTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCATTACTTTCCCTAGCAGCCTTCACTTCTCTCCCTACGCGCACTCAACCGGATGAGGTTGATCTTCCGGTTACCACACAAGTCAAACCGGAGCCAAGCTCCAACAAGAACCCGAGTCCAACACCACCACCCATCATCTCCGGCCTCCACACACATACCTCAAGATCATCTCGGTGCTGCTCCCGAAATCCTTCGATCACCGACCACAGCAACGAGCTCAAGTCGCTACTAGAACCGGAGGTCCGCTGCCAAACGATTGCGGACCGACGCAGCAACAAATTGGTTAAGGCCTTCAAACGATGCTCGATGCCATCACCTTCGGTGTCATCGTCCTCGGGTAGCTTCTTCACTTCTCTCTCTCTGTTTTTACCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

150

Amino Acids

16.19

Weight (kDa)

9.84

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	2 cut(s)	319, 335
AclWI	GGATC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	370
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	4 cut(s)	74, 174, 292, 417
AluI	AGCT	4 cut(s)	74, 174, 292, 417
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	2 cut(s)	187, 409
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	2 cut(s)	217, 363
ApeKI	GCWGC	5 cut(s)	74, 92, 252, 321, 345
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	316, 337
AsuHPI	GGTGA	2 cut(s)	265, 381
AvaI	CYCGRG	2 cut(s)	187, 409
AvaII	GGWCC	2 cut(s)	316, 337
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	5 cut(s)	61, 104, 239, 308, 357
BccI	CCATC	2 cut(s)	215, 394
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	89, 305
BisI	GCNGC	5 cut(s)	75, 93, 253, 322, 346
BlsI	GCNGC	5 cut(s)	76, 94, 254, 323, 347
Bme18I	GGWCC	2 cut(s)	316, 337
BmeT110I	CYCGRG	2 cut(s)	187, 409
BmgT120I	GGNCC	2 cut(s)	316, 337
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	3 cut(s)	38, 365, 372
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpuEI	CTTGAG	2 cut(s)	220, 278
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	5 cut(s)	18, 124, 142, 163, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	51
BseXI	GCAGC	5 cut(s)	61, 104, 239, 308, 357
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	219, 365
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	2 cut(s)	187, 409
BsiSI	CCGG	6 cut(s)	19, 125, 143, 164, 216, 311
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	219, 365
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	2 cut(s)	187, 409
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	68, 136, 239, 270
BspACI	CCGC	2 cut(s)	319, 335
BspANI	GGCC	2 cut(s)	219, 365
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	68, 136, 239, 270
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	4 cut(s)	71, 139, 242, 273
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	68, 136, 239, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 298
BstPI	GGTNACC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	5 cut(s)	61, 104, 239, 308, 357
BsuRI	GGCC	2 cut(s)	219, 365
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	30
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	316, 337
CpoI	CGGWCCG	1 cut(s)	337
CseI	GACGC	1 cut(s)	351
CspI	CGGWCCG	1 cut(s)	337
CviJI	RGCY	9 cut(s)	5, 74, 95, 169, 174, 219, 292, 365, 417
CviKI_1	RGCY	9 cut(s)	5, 74, 95, 169, 174, 219, 292, 365, 417
DpnI	GATC	4 cut(s)	70, 138, 241, 272
DpnII	GATC	4 cut(s)	68, 136, 239, 270
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	316, 337
Eco53kI	GAGCTC	1 cut(s)	292
Eco88I	CYCGRG	2 cut(s)	187, 409
Eco91I	GGTNACC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	294
FaiI	YATR	2 cut(s)	47, 231
Fnu4HI	GCNGC	5 cut(s)	75, 93, 253, 322, 346
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	5 cut(s)	75, 93, 253, 322, 346
FspBI	CTAG	2 cut(s)	89, 305
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	5 cut(s)	75, 93, 253, 322, 346
HaeIII	GGCC	2 cut(s)	219, 365
HapII	CCGG	6 cut(s)	19, 125, 143, 164, 216, 311
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	6 cut(s)	19, 125, 143, 164, 216, 311
HphI	GGTGA	2 cut(s)	265, 381
Hpy188III	TCNNGA	3 cut(s)	19, 237, 258
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	4 cut(s)	106, 276, 376, 402
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	38, 77
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 298
HspAI	GCGC	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	68, 136, 239, 270
LmnI	GCTCC	3 cut(s)	166, 179, 260
LpnPI	CCDG	6 cut(s)	32, 138, 156, 177, 229, 324
Lsp1109I	GCAGC	5 cut(s)	61, 104, 239, 308, 357
LweI	GCATC	3 cut(s)	38, 365, 372
MaeI	CTAG	2 cut(s)	89, 305
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	70, 138, 241, 272
MboI	GATC	4 cut(s)	68, 136, 239, 270
MboII	GAAGA	3 cut(s)	7, 131, 412
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	201, 218
MnlI	CCTC	5 cut(s)	124, 230, 244, 307, 418
MroI	TCCGGA	1 cut(s)	18
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	247
MspA1I	CMGCKG	2 cut(s)	74, 321
MspI	CCGG	6 cut(s)	19, 125, 143, 164, 216, 311
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	35, 298
NdeII	GATC	4 cut(s)	68, 136, 239, 270
NlaIV	GGNNCC	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	265
PkrI	GCNGC	5 cut(s)	76, 94, 254, 323, 347
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	316, 337
PvuII	CAGCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	247
Rsr2I	CGGWCCG	1 cut(s)	337
RsrII	CGGWCCG	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	5 cut(s)	75, 93, 253, 322, 346
Sau3AI	GATC	4 cut(s)	68, 136, 239, 270
Sau96I	GGNCC	2 cut(s)	316, 337
SchI	GAGTC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	8 cut(s)	76, 135, 176, 236, 294, 318, 394, 419
SfaNI	GCATC	3 cut(s)	38, 365, 372
SinI	GGWCC	2 cut(s)	316, 337
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	2 cut(s)	235, 293
SmoI	CTYRAG	2 cut(s)	235, 293
Sse9I	AATT	1 cut(s)	353
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	319, 335
SspMI	CTAG	2 cut(s)	89, 305
SstI	GAGCTC	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	269, 380
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	5 cut(s)	74, 92, 252, 321, 345
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	316, 337
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	2 cut(s)	89, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.