Rroxscaffold_2G00129860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015724
Physical Location & Seq
Forward (+)
65966794 .. 65969582
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129860.1

Sequence Viewer

Length: 441 bp
ATGTCCCAAATTGAGATTGAAGAGGGCAAAAAAGGGATCCTCGCTGCTGGAATGAATTTGATTAAATTCCAGCCTTCACTTCTCTCCCTACGCGCACTCAACCGGATGAGGTTGATCTTCCGCTACCACACAAGTCAAACCGGAGCCAAGCTCCAACAAGAACCCGAGTCCAACACCACCACCCATCATCTCCGCCTCCACACACATACCTCAAGATCATCTCGGCGTCGCTCCCGAAATCCTTCGATCACCAACCACAAGAACGAGCTCAAGTCGCTACTAGAACCGGAGGTCCGTCGCCAAACAAGCAGACCGACGCAAGAAAAATTGGTTAAGGCCTTCAAACGATGCTCTAATGCCATCACCTTCGGTGTCATCGTCCTCGGTAGCTTTTTCACTTCTCTCTCTCGTTTTTACCAAGATGAGGAGGATTGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.98

Weight (kDa)

10.72

Isoelectric Point (pI)

75.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 121, 193
AclWI GGATC 2 cut(s) 31, 44
AcsI RAATTY 2 cut(s) 55, 65
AcyI GRCGYC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 2 cut(s) 20, 343
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 3 cut(s) 151, 268, 390
AluI AGCT 3 cut(s) 151, 268, 390
Alw21I GWGCWC 1 cut(s) 270
AlwI GGATC 2 cut(s) 31, 44
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 55, 65
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 2 cut(s) 95, 438
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 241, 355
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 292
BamHI GGATCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 192, 368
BfaI CTAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 439
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 38, 145
BmsI GCATC 1 cut(s) 338
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BpuEI CTTGAG 2 cut(s) 196, 254
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 3 cut(s) 102, 140, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 3 cut(s) 103, 141, 287
BslI CCNNNNNNNGG 1 cut(s) 424
BsnI GGCC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 4 cut(s) 36, 114, 215, 246
BspACI CCGC 2 cut(s) 121, 193
BspANI GGCC 1 cut(s) 338
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 38, 145
BspPI GGATC 2 cut(s) 31, 44
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 4 cut(s) 36, 114, 215, 246
BssNI GRCGYC 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 226
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 2 cut(s) 95, 438
BstKTI GATC 4 cut(s) 39, 117, 218, 249
BstMBI GATC 4 cut(s) 36, 114, 215, 246
BstMWI GCNNNNNNNGC 2 cut(s) 274, 306
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 338
BtsCI GGATG 1 cut(s) 111
CfoI GCGC 2 cut(s) 95, 438
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 2 cut(s) 215, 325
CviJI RGCY 6 cut(s) 73, 146, 151, 268, 338, 390
CviKI_1 RGCY 6 cut(s) 73, 146, 151, 268, 338, 390
DpnI GATC 4 cut(s) 38, 116, 217, 248
DpnII GATC 4 cut(s) 36, 114, 215, 246
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 270
FaiI YATR 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 118
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 281
GlaI GCGC 2 cut(s) 94, 437
GluI GCNGC 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 1 cut(s) 338
HapII CCGG 3 cut(s) 103, 141, 287
HgaI GACGC 2 cut(s) 215, 325
HhaI GCGC 2 cut(s) 95, 438
Hin1I GRCGYC 1 cut(s) 226
Hin6I GCGC 2 cut(s) 93, 436
HinP1I GCGC 2 cut(s) 93, 436
HinfI GANTC 1 cut(s) 167
HpaII CCGG 3 cut(s) 103, 141, 287
HphI GGTGA 2 cut(s) 241, 355
Hpy188III TCNNGA 2 cut(s) 213, 234
Hpy99I CGWCG 3 cut(s) 231, 300, 319
HpyAV CCTTC 4 cut(s) 84, 252, 349, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 306
Hsp92I GRCGYC 1 cut(s) 226
HspAI GCGC 2 cut(s) 93, 436
Kzo9I GATC 4 cut(s) 36, 114, 215, 246
LmnI GCTCC 3 cut(s) 143, 156, 236
LpnPI CCDG 5 cut(s) 33, 83, 116, 154, 300
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 281
MalI GATC 4 cut(s) 38, 116, 217, 248
MboI GATC 4 cut(s) 36, 114, 215, 246
MboII GAAGA 2 cut(s) 32, 109
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 4 cut(s) 9, 55, 65, 326
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 178, 195
MnlI CCTC 9 cut(s) 16, 50, 102, 206, 220, 283, 392, 418, 421
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 2 cut(s) 63, 333
MspI CCGG 3 cut(s) 103, 141, 287
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 274, 306
NdeII GATC 4 cut(s) 36, 114, 215, 246
NlaIV GGNNCC 2 cut(s) 38, 145
NmeAIII GCCGAG 1 cut(s) 202
PceI AGGCCT 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 38, 145
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 36
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 63, 333
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 4 cut(s) 36, 114, 215, 246
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 270
SetI ASST 7 cut(s) 113, 153, 212, 270, 294, 368, 392
SfaNI GCATC 1 cut(s) 338
SinI GGWCC 1 cut(s) 292
SmlI CTYRAG 2 cut(s) 211, 269
SmoI CTYRAG 2 cut(s) 211, 269
Sse9I AATT 4 cut(s) 9, 55, 65, 326
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 2 cut(s) 121, 193
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 270
StuI AGGCCT 1 cut(s) 338
TaqI TCGA 1 cut(s) 245
TaqII GACCGA 1 cut(s) 328
TasI AATT 4 cut(s) 9, 55, 65, 326
Tru1I TTAA 2 cut(s) 63, 333
Tru9I TTAA 2 cut(s) 63, 333
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 2 cut(s) 55, 65
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.