Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

8289728 .. 8301198

Gene Structure 11471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCGCCACTCGGTGGGAGCGGTCTTCTGGCGATTTCGACGACTCGGCCTACTAGATCTCCATCTCTGTCGGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCGGCCTCCCTACCCGCGGATCCGACGAGTTCCGCCCCTTCGTTCGACGGCTCCCCGAGTTTAAATTCTGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCAGAAGGATTTGCACTAAGGAAGTACCGGACAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACTGTGTCTAGCCCAAAATTAGCTAGAGTTAACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTACCTACTCTGTTCACAAGCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTACTGGTAGGAAAACTGGTGGATACATAGAAGGAGATATTAAGATATCTGGTTACCTGAGAGAGCAACATACTTTTGCTAGAGTAGCAGGATATGTTGAGCAAAATGACATACATTCTCCTCAAGTTACAGTTGAGGAGAGTCTATGGTTTTCTTCTGCTCTTCGCTTTCCAAAGGAAGTCAGCACAGAGACAAGACTCGTGTTTGTTGAAGAAGTAATGGAACTTAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

267

Amino Acids

29.22

Weight (kDa)

7.86

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rer1	PF03248	24 - 59	1.9e-08	Rer1 family
ABC_tran	PF00005	160 - 249	3.5e-11	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccBSI	CCGCTC	2 cut(s)	21, 492
AccI	GTMKAC	2 cut(s)	75, 454
AccII	CGCG	1 cut(s)	123
AciI	CCGC	5 cut(s)	21, 121, 123, 139, 492
AclWI	GGATC	3 cut(s)	79, 120, 133
AcsI	RAATTY	1 cut(s)	170
AcyI	GRCGYC	2 cut(s)	5, 564
AdeI	CACNNNGTG	1 cut(s)	14
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	14, 122, 361, 362
AgsI	TTSAA	1 cut(s)	779
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	191, 341, 521, 542, 800
AluI	AGCT	5 cut(s)	191, 341, 521, 542, 800
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	3 cut(s)	79, 120, 133
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	47, 103, 109
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	2 cut(s)	80, 108
AsuHPI	GGTGA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	3 cut(s)	70, 296, 553
BceAI	ACGGC	2 cut(s)	118, 170
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	80, 108
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	5 cut(s)	54, 327, 342, 534, 648
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	3 cut(s)	80, 108, 507
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	4 cut(s)	6, 106, 127, 158
BmrFI	CCNGG	3 cut(s)	80, 108, 507
BmrI	ACTGGG	1 cut(s)	350
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	675
BpuMI	CCSGG	2 cut(s)	80, 108
BsaBI	GATNNNNATC	1 cut(s)	61
BsaHI	GRCGYC	2 cut(s)	5, 564
BsaJI	CCNNGG	2 cut(s)	106, 121
BsaWI	WCCGGW	1 cut(s)	255
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 428, 458
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 122, 361, 362
Bse1I	ACTGG	3 cut(s)	356, 577, 589
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	106, 121
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	4 cut(s)	14, 122, 361, 362
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	3 cut(s)	356, 577, 589
BseRI	GAGGAG	2 cut(s)	678, 719
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	49, 105, 111
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	3 cut(s)	80, 108, 256
BslI	CCNNNNNNNGG	4 cut(s)	14, 122, 361, 362
BsmAI	GTCTC	1 cut(s)	752
BsnI	GGCC	3 cut(s)	49, 105, 111
BsoBI	CYCGRG	1 cut(s)	161
Bsp143I	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
BspACI	CCGC	5 cut(s)	21, 121, 123, 139, 492
BspANI	GGCC	3 cut(s)	49, 105, 111
BspCNI	CTCAG	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	6, 106, 127, 158
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	3 cut(s)	79, 120, 133
BspQI	GCTCTTC	1 cut(s)	735
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	2 cut(s)	21, 492
BsrI	ACTGG	3 cut(s)	356, 577, 589
BssECI	CCNNGG	2 cut(s)	106, 121
BssMI	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
BssNAI	GTATAC	1 cut(s)	455
BssNI	GRCGYC	2 cut(s)	5, 564
BssSI	CACGAG	1 cut(s)	767
Bst1107I	GTATAC	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	767
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	262, 322, 700
Bst6I	CTCTTC	1 cut(s)	735
BstACI	GRCGYC	2 cut(s)	5, 564
BstDEI	CTNAG	4 cut(s)	187, 245, 626, 794
BstDSI	CCRYGG	1 cut(s)	121
BstEII	GGTNACC	1 cut(s)	620
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	59, 87, 128, 181, 202, 372
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	1 cut(s)	507
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	78, 106, 505
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	3 cut(s)	56, 84, 125
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	3 cut(s)	56, 84, 125
BstZ17I	GTATAC	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	49, 105, 111
BtgI	CCRYGG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	267
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	104
Cfr42I	CCGCGG	1 cut(s)	124
CsiI	ACCWGGT	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	253
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	4 cut(s)	187, 245, 626, 794
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	6 cut(s)	58, 86, 127, 180, 201, 371
DpnII	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
DraI	TTTAAA	1 cut(s)	169
DraIII	CACNNNGTG	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
EciI	GGCGGA	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	615
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaiI	YATR	8 cut(s)	209, 218, 455, 596, 639, 663, 680, 715
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	2 cut(s)	75, 454
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	5 cut(s)	54, 327, 342, 534, 648
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	49, 105, 111
HapII	CCGG	3 cut(s)	80, 108, 256
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 564
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	76, 349
HindII	GTYRAC	2 cut(s)	76, 349
HinfI	GANTC	5 cut(s)	43, 289, 461, 709, 765
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	3 cut(s)	80, 108, 256
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	4 cut(s)	76, 349, 424, 455
Hpy188I	TCNGA	3 cut(s)	100, 130, 183
Hpy8I	GTNNAC	4 cut(s)	76, 349, 424, 455
Hpy99I	CGWCG	4 cut(s)	43, 104, 134, 156
HpyAV	CCTTC	4 cut(s)	154, 227, 278, 593
HpyCH4III	ACNGT	3 cut(s)	262, 322, 700
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	242, 299, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	4 cut(s)	187, 245, 626, 794
HpySE526I	ACGT	1 cut(s)	564
Hsp92I	GRCGYC	2 cut(s)	5, 564
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	349
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	3 cut(s)	18, 162, 539
Lsp1109I	GCAGC	1 cut(s)	283
MabI	ACCWGGT	1 cut(s)	505
MaeI	CTAG	5 cut(s)	54, 327, 342, 534, 648
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	4 cut(s)	409, 444, 620, 694
MalI	GATC	6 cut(s)	58, 86, 127, 180, 201, 371
MbiI	CCGCTC	2 cut(s)	21, 492
MboI	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
MboII	GAAGA	4 cut(s)	17, 714, 722, 791
MflI	RGATCY	3 cut(s)	56, 84, 125
MluCI	AATT	2 cut(s)	170, 335
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	37, 298, 718, 759
MmeI	TCCRAC	2 cut(s)	123, 153
MnlI	CCTC	4 cut(s)	122, 204, 697, 699
MseI	TTAA	4 cut(s)	168, 348, 389, 609
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	3 cut(s)	80, 108, 256
MspR9I	CCNGG	3 cut(s)	80, 108, 507
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	653
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	80, 108
NdeII	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
NlaIV	GGNNCC	4 cut(s)	6, 106, 127, 158
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	461
PflFI	GACNNNGTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	4 cut(s)	37, 297, 717, 759
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	4 cut(s)	37, 297, 717, 759
Psp6I	CCWGG	1 cut(s)	505
PspEI	GGTNACC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	4 cut(s)	6, 106, 127, 158
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	3 cut(s)	56, 84, 125
PsyI	GACNNNGTC	1 cut(s)	322
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	557
SacII	CCGCGG	1 cut(s)	124
SalI	GTCGAC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	4 cut(s)	168, 348, 389, 609
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	6 cut(s)	56, 84, 125, 178, 199, 369
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	4 cut(s)	37, 298, 718, 759
ScrFI	CCNGG	3 cut(s)	80, 108, 507
SexAI	ACCWGGT	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	124
SgrBI	CCGCGG	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
Sse9I	AATT	2 cut(s)	170, 335
SsiI	CCGC	5 cut(s)	21, 121, 123, 139, 492
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	5 cut(s)	54, 327, 342, 534, 648
StyD4I	CCNGG	3 cut(s)	78, 106, 505
TaaI	ACNGT	3 cut(s)	262, 322, 700
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	5 cut(s)	38, 75, 151, 464, 482
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	170, 335
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	4 cut(s)	168, 348, 389, 609
Tru9I	TTAA	4 cut(s)	168, 348, 389, 609
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	2 cut(s)	205, 455
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	14
XapI	RAATTY	1 cut(s)	170
XmiI	GTMKAC	2 cut(s)	75, 454
XspI	CTAG	5 cut(s)	54, 327, 342, 534, 648
ZraI	GACGTC	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.