Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

34854949 .. 34856052

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGACCAGCCTGCCTTTTCTTTTTCGAGATAGCATTAAGCCATGGTGGCAATGGGCCTTTTGGGTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGATGTAAGGTGGATCAAGAATGTTGTTCATCACATGTTCTTCACAGCACTAAGGAAGTACCGAACGGTGCTTCCACTTGATGACACAGAAGGGAGTCCCGCTGCAGATGGTCGGTCGCAACTCCACCATCTACCTCATGAGATGAAATCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGCGGGAAAACTGTCTGCATGATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

139

Amino Acids

15.43

Weight (kDa)

9.25

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	7 - 37	2.5e-06	ABC-2 type transporter
ABC_tran	PF00005	99 - 132	6e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	384
AccBSI	CCGCTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	213, 309, 393
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	2 cut(s)	338, 359
AluI	AGCT	2 cut(s)	338, 359
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	60, 312
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	3 cut(s)	215, 249, 370
BciT130I	CCWGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	3 cut(s)	213, 309, 393
BspANI	GGCC	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	126
BssNAI	GTATAC	1 cut(s)	272
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	41
Bst1107I	GTATAC	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	181, 403
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	11, 391
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstZ17I	GTATAC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	11, 391
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	54
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	42, 148, 251, 409
CviJI	RGCY	5 cut(s)	9, 40, 56, 338, 359
CviKI_1	RGCY	5 cut(s)	9, 40, 56, 338, 359
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	4 cut(s)	45, 151, 254, 412
FaiI	YATR	8 cut(s)	43, 79, 81, 149, 252, 272, 410, 418
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	4 cut(s)	41, 147, 250, 408
FauI	CCCGC	2 cut(s)	220, 386
FauNDI	CATATG	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	4 cut(s)	45, 151, 254, 412
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	208, 278
HphI	GGTGA	2 cut(s)	60, 312
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	26, 130, 251
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	181, 403
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	218, 289, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	4 cut(s)	45, 151, 254, 412
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	7 cut(s)	19, 23, 288, 309, 336, 345, 375
Lsp1109I	GCAGC	1 cut(s)	202
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	381
MalI	GATC	1 cut(s)	128
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	1 cut(s)	126
MboII	GAAGA	1 cut(s)	145
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	1 cut(s)	258
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	4 cut(s)	45, 151, 254, 412
NspI	RCATGY	1 cut(s)	151
PagI	TCATGA	1 cut(s)	250
PciI	ACATGT	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PscI	ACATGT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	7 cut(s)	125, 250, 271, 328, 340, 361, 384
SexAI	ACCWGGT	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	3 cut(s)	213, 309, 393
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	181, 403
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	25, 281, 299
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	4 cut(s)	120, 131, 272, 405
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.