Rroxscaffold_2G00129870

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015724
Physical Location & Seq
Forward (+)
65969656 .. 65978323
8668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129870.1

Sequence Viewer

Length: 321 bp
ATGGGCATAATGTTTCACGGATGCCTCAAGATAGCTAGTTTGATTAACAACATTATGATGAACCTTGCTACGCATCCACAAATACAGGATAAGATCTACTCGGAGGTAACTATGGCACGAAAAGATACAATGAAAGAAGACCAGATTAATGGTGATAAGATGGTCTTATTACGGGCAACTATTTACGAATCTACTCGTCTTGTGTCGGTCGGGCCTTTGCTACAGAGATGTTCTCTCAAACATGATTTTACTCTTAAGAGCGGTCATACCATACCACCTGGAGCAGAGTGGTTGTACTGTAGAGTCGGTAATGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04726 map04726
Pfam Domains
Protein Families
p450

Protein Analysis

106

Amino Acids

11.92

Weight (kDa)

8.51

Isoelectric Point (pI)

18.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 96 1.3e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 261
AciI CCGC 1 cut(s) 261
AfaI GTAC 1 cut(s) 296
AflII CTTAAG 1 cut(s) 254
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AoxI GGCC 1 cut(s) 212
AseI ATTAAT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 144
BccI CCATC 2 cut(s) 154, 308
BciT130I CCWGG 1 cut(s) 279
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 2 cut(s) 221, 298
BfrI CTTAAG 1 cut(s) 254
BglII AGATCT 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 11, 82
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpmI CTGGAG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 26, 73
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 210
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 261
BspANI GGCC 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 261
BssMI GATC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 299
BstAFI CTTAAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 26, 73
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 210
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 2 cut(s) 221, 298
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 26, 73
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 242
CviJI RGCY 2 cut(s) 35, 214
CviKI_1 RGCY 2 cut(s) 35, 214
CviQI GTAC 1 cut(s) 295
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 1 cut(s) 245
FaiI YATR 6 cut(s) 8, 56, 113, 243, 267, 272
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 1 cut(s) 241
FokI GGATG 2 cut(s) 33, 60
FspBI CTAG 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 1 cut(s) 245
HinfI GANTC 2 cut(s) 188, 303
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 299
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 4 cut(s) 71, 155, 264, 291
LweI GCATC 2 cut(s) 11, 82
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 95
MbiI CCGCTC 1 cut(s) 261
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 93
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 2 cut(s) 35, 97
MseI TTAA 3 cut(s) 45, 147, 255
MslI CAYNNNNRTG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 245
PfeI GAWTC 1 cut(s) 188
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 45, 147, 255
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 279
SetI ASST 4 cut(s) 37, 66, 108, 280
SfaNI GCATC 2 cut(s) 11, 82
SfcI CTRYAG 2 cut(s) 221, 298
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 26, 254
SmoI CTYRAG 2 cut(s) 26, 254
SsiI CCGC 1 cut(s) 261
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 299
TaqII GACCGA 1 cut(s) 196
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 3 cut(s) 45, 147, 255
Tru9I TTAA 3 cut(s) 45, 147, 255
TspDTI ATGAA 2 cut(s) 74, 146
TspGWI ACGGA 1 cut(s) 33
Vha464I CTTAAG 1 cut(s) 254
VspI ATTAAT 1 cut(s) 147
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.