Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

4666091 .. 4666743

Gene Structure 653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006129

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGTCACAAAGTATACCAGAATCGAAGTTGCAACTCTTGTCGAAGGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATAGACGTCCTTGCTGGTAGGAAAACTGGTGGATACATAGGAGATATTAAGATATCTGGTTACCCGAGAGAGCAACGTACTTTTGCTAGAGTAGCTGGATATTTTGCTCAAAATGACACACATTCTCCTCAACTTTTACAGTTGAGGAGTCTCTATGGTCTTCTTCTGCTCTTCGCCTTCAAAGGAAGTCAGCACAGAGACAAGACTTGTGTTTGTCGAAGAAGTAATGAAACTAATAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

122

Amino Acids

13.15

Weight (kDa)

10.15

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	15 - 85	2.1e-09	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	16
AciI	CCGC	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	4 cut(s)	83, 104, 215, 362
AluI	AGCT	4 cut(s)	83, 104, 215, 362
Alw26I	GTCTC	2 cut(s)	275, 312
Ama87I	CYCGRG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	57, 61
AvaI	CYCGRG	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	275, 312
BfaI	CTAG	2 cut(s)	96, 207
BfuI	GTATCC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	237, 280
BsiHKCI	CYCGRG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	275, 312
BsoBI	CYCGRG	1 cut(s)	184
BspACI	CCGC	1 cut(s)	54
BspQI	GCTCTTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	151
BssNAI	GTATAC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	179
BstMAI	GTCTC	2 cut(s)	275, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	146
CsiI	ACCWGGT	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	198
CviJI	RGCY	4 cut(s)	83, 104, 215, 362
CviKI_1	RGCY	4 cut(s)	83, 104, 215, 362
CviQI	GTAC	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	174
FaiI	YATR	3 cut(s)	17, 158, 276
FblI	GTMKAC	1 cut(s)	16
FspBI	CTAG	2 cut(s)	96, 207
Hin1I	GRCGYC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	23, 268
HphI	GGTGA	2 cut(s)	57, 61
Hpy166II	GTNNAC	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	40, 307
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	2 cut(s)	126, 196
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	126, 196
Hsp92I	GRCGYC	1 cut(s)	126
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	8 cut(s)	33, 54, 81, 90, 120, 132, 162, 201
MabI	ACCWGGT	1 cut(s)	67
MaeI	CTAG	2 cut(s)	96, 207
MaeII	ACGT	2 cut(s)	126, 196
MaeIII	GTNAC	2 cut(s)	6, 179
MbiI	CCGCTC	1 cut(s)	54
MboII	GAAGA	4 cut(s)	272, 275, 283, 351
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	2 cut(s)	258, 258
MseI	TTAA	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	168
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	8 cut(s)	51, 73, 85, 106, 129, 199, 217, 364
SexAI	ACCWGGT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	96, 207
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	2 cut(s)	129, 199
TaqI	TCGA	3 cut(s)	26, 44, 337
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	17, 363
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	2 cut(s)	96, 207
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.