Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015724

Physical Location & Seq

Genomic Coordinates Forward (+)

20345910 .. 20352004

Gene Structure 6095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATGAACCTTGCTACGCATCCACAAATACAGGATAAGATCTACTCGGAGGTAACTATGGCACGAAAAGATACAATGAAAGAAGACCAGATTAATGGTGATAAGATGTCCCTAGCAGCCTTCACTTCTCTCCCTACGCGCACTCAACCGGATGAGGTTGATCTTCCGGCTACCACACAAGTCAAACCGGAGCCAAGCTCCAACAAGAACCCGAGTCCAACGCCACCACCCATCATCTCCGGTCTCCACACACATACCTCAAGATCATCTCGGCGCTGCTCCCCGAAATCCTTCGATCACCACCACAAGCAACGAGCTCAAGTCGCTACTAGAACCGGAGGTCTGCTGCCAAACAGCTTGCAGACCGACGCAGCAGAAATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04726 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

128

Amino Acids

14.05

Weight (kDa)

8.85

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015724)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g01640
rosa_laevigata	RLG00000006129
rosa_roxburghii	Rroxscaffold_2G00091580 Rroxscaffold_2G00129860 Rroxscaffold_2G00129870 Rroxscaffold_3G00252940 Rroxscaffold_5G00355820 Rroxscaffold_5G00375990 Rroxscaffold_5G00381910 Rroxscaffold_5G00382020 Rroxscaffold_6G00398460 Rroxscaffold_6G00398470
rosa_samantha	Rh1BG056100 Rh2AG413200 Rh2CG399400 Rh2CG399500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	139
AluBI	AGCT	3 cut(s)	198, 317, 357
AluI	AGCT	3 cut(s)	198, 317, 357
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	116, 276, 346, 371
AseI	ATTAAT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	141, 276
AsuHPI	GGTGA	2 cut(s)	110, 290
AvaI	CYCGRG	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	4 cut(s)	128, 263, 333, 383
BccI	CCATC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	113, 330
BfoI	RGCGCY	1 cut(s)	277
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	4 cut(s)	117, 277, 347, 372
BlsI	GCNGC	4 cut(s)	118, 278, 348, 373
BmeT110I	CYCGRG	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpuEI	CTTGAG	2 cut(s)	244, 303
BsaI	GGTCTC	1 cut(s)	248
BsaWI	WCCGGW	4 cut(s)	148, 187, 239, 335
BseGI	GGATG	2 cut(s)	19, 157
BseXI	GCAGC	4 cut(s)	128, 263, 333, 383
Bsh1236I	CGCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	5 cut(s)	149, 167, 188, 240, 336
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	39, 160, 263, 295
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	248
BssMI	GATC	4 cut(s)	39, 160, 263, 295
BstC8I	GCNNGC	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	19, 157
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	141, 276
BstKTI	GATC	4 cut(s)	42, 163, 266, 298
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	4 cut(s)	39, 160, 263, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	4 cut(s)	128, 263, 333, 383
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	19, 157
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	2 cut(s)	141, 276
CseI	GACGC	1 cut(s)	377
CviJI	RGCY	6 cut(s)	119, 170, 193, 198, 317, 357
CviKI_1	RGCY	6 cut(s)	119, 170, 193, 198, 317, 357
DpnI	GATC	4 cut(s)	41, 162, 265, 297
DpnII	GATC	4 cut(s)	39, 160, 263, 295
Ecl136II	GAGCTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	319
FaiI	YATR	2 cut(s)	59, 255
FaqI	GGGAC	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	117, 277, 347, 372
FokI	GGATG	2 cut(s)	6, 164
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	4 cut(s)	117, 277, 347, 372
FspBI	CTAG	2 cut(s)	113, 330
GlaI	GCGC	2 cut(s)	140, 275
GluI	GCNGC	4 cut(s)	117, 277, 347, 372
HaeII	RGCGCY	1 cut(s)	277
HapII	CCGG	5 cut(s)	149, 167, 188, 240, 336
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	2 cut(s)	141, 276
Hin6I	GCGC	2 cut(s)	139, 274
HinP1I	GCGC	2 cut(s)	139, 274
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	5 cut(s)	149, 167, 188, 240, 336
HphI	GGTGA	2 cut(s)	110, 290
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	261
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	130, 301
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HspAI	GCGC	2 cut(s)	139, 274
Kzo9I	GATC	4 cut(s)	39, 160, 263, 295
LmnI	GCTCC	3 cut(s)	190, 203, 284
LpnPI	CCDG	7 cut(s)	17, 101, 162, 180, 201, 253, 349
Lsp1109I	GCAGC	4 cut(s)	128, 263, 333, 383
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	113, 330
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	4 cut(s)	41, 162, 265, 297
MboI	GATC	4 cut(s)	39, 160, 263, 295
MboII	GAAGA	2 cut(s)	95, 155
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	2 cut(s)	225, 242
MnlI	CCTC	4 cut(s)	43, 148, 268, 332
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	2 cut(s)	93, 385
MspI	CCGG	5 cut(s)	149, 167, 188, 240, 336
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	4 cut(s)	39, 160, 263, 295
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	290
PkrI	GCNGC	4 cut(s)	118, 278, 348, 373
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	2 cut(s)	93, 385
SatI	GCNGC	4 cut(s)	117, 277, 347, 372
Sau3AI	GATC	4 cut(s)	39, 160, 263, 295
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	8 cut(s)	12, 54, 159, 200, 260, 319, 343, 359
SfaNI	GCATC	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	259, 318
SmoI	CTYRAG	2 cut(s)	259, 318
Sse9I	AATT	1 cut(s)	378
SspMI	CTAG	2 cut(s)	113, 330
SstI	GAGCTC	1 cut(s)	319
TaqI	TCGA	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	93, 385
Tru9I	TTAA	2 cut(s)	93, 385
TseI	GCWGC	4 cut(s)	116, 276, 346, 371
TspDTI	ATGAA	2 cut(s)	20, 92
VspI	ATTAAT	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	2 cut(s)	113, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.