pycom14g02930

Iaa-amino acid hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
2255575 .. 2258335
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1311 bp
ATGGGGTTTTTCACTTTCTTCACCTCCTTCTTGCTACTGTCATCAGCTGCCGCAGTGTTTCATCAGCATTCTTGTGCTGCCGGAGGTGGACCGGAGCTCGAGTCACTGACTCAAGAGCTGCTGGCGTCGGCGAGGGAGCCCGAGTTTTTCGAATGGATGAGAGGGTTGAGGTGGAGGATCCACCAGTACCCGGAGCTGGGATTCCAGGAGCACAGGACGAGTGAACTCGTCAGGACCGAGCTCGACTCGCTGGGAGTTGGGTACAAGTGGCCTGTTGCCAAGACTGGGGTGGTGGCTTCTATTGGCTCTGGCTCTAAACCAGTCTTTGCTCTTCGAGCTGACATGGATGCCCTCCCTCTCCAGGAATTGTTAGATTGGGAATACAAGAGCAAAGTTGATGGAAAGATGCATGCTTGTGGTCATGATTCGCACGTCGCAATGCTACTTGGAGCAGCCAAGTTGCTTCAAAACAAAAAAGATTTGTTGAAGGGAACCGTGAAACTAGTTTTCCAGCCTGGAGAGGAGGGTTACGCTGGAGCTTACCATATGTTAAAAGACGATGTTTTGAATGACATCGACGCCATCTTGAGCATACATGTTTTTCCATCAGTACCAACTGGTGCCATAGCTTCGAGGCCTGGGGCAGTACTTGCTGGCGTGGGGCTCTTTGAGGCTACAATACAAGGAAAAGTAGGGCAAGGATCATCCCCTCATGAGGCCAGGGACCCAATTCCTGCAGCAGCCTCTATAACCATTGCACTCCAACAGATTGTGTCTCGAGAGACAGATCCACTTGAATCCAGAGTGGTAACAGTAGGGTACATACAGGGAGGTCAAGCAGGAAATGTGATCCCCGACAGTGTGAAAGTCGGGGGAACTTATCGAAGCTTGACTTCTGAGGGTCTCTCATATCTGCAAGAAAGGATCAAAGAGATTATAGAGCAGCAAGCAACCGTGCATCGATGTACGGCTGTGGTGGACTTCATGGAGGACAGACCACTGCCTCATCCGGCGATGAAGAATGACGATGCACTGTACGAACATGTGAAGAATGTCGGTGAGGTCCTTGTTGGGGAACCTAATGTTCATCTTATGCCGCTGACTATGGGTGCAGAGGATTTCAGCTTCTTCGCAGAGAAGACTGCTGCTGCAATCTTTTTTGTTGGGATAAAGAACGAGACTCTGAAATCGAGCCAACACTTGCACTCTCCCTACTTTTTTATCGACGAGGAGGCTCTTCCACTAGGAGCAGCACTTCATGCAGCGTCTGCAATCTCATACTTCTATCGCCATGATGTCAACACTGAGTAG

Protein Analysis

437

Amino Acids

47.53

Weight (kDa)

5.5

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 110 - 422 3.2e-41 Peptidase family M20/M25/M40
M20_dimer PF07687 221 - 317 1.6e-08 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 620
AciI CCGC 2 cut(s) 51, 1097
AclWI GGATC 6 cut(s) 172, 185, 709, 782, 844, 932
AcyI GRCGYC 2 cut(s) 125, 579
AfaI GTAC 7 cut(s) 188, 263, 612, 648, 821, 967, 1037
AfiI CCNNNNNNNGG 7 cut(s) 190, 196, 197, 285, 361, 715, 1072
AflIII ACRYGT 2 cut(s) 595, 1042
AgsI TTSAA 4 cut(s) 467, 487, 568, 797
AhlI ACTAGT 1 cut(s) 502
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 5 cut(s) 204, 360, 514, 637, 719
Alw21I GWGCWC 3 cut(s) 99, 213, 243
Alw26I GTCTC 4 cut(s) 776, 780, 908, 1172
AlwI GGATC 6 cut(s) 172, 185, 709, 782, 844, 932
AlwNI CAGNNNCTG 1 cut(s) 1268
Ama87I CYCGRG 3 cut(s) 98, 140, 777
AoxI GGCC 3 cut(s) 269, 635, 717
AspS9I GGNCC 4 cut(s) 89, 234, 724, 1063
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 13, 1070
AsuII TTCGAA 1 cut(s) 150
AvaI CYCGRG 3 cut(s) 98, 140, 777
AvaII GGWCC 4 cut(s) 89, 234, 724, 1063
BamHI GGATCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 620
BanII GRGCYC 4 cut(s) 99, 141, 243, 666
BbsI GAAGAC 1 cut(s) 1145
Bbv12I GWGCWC 3 cut(s) 99, 213, 243
BccI CCATC 3 cut(s) 392, 590, 613
BceAI ACGGC 1 cut(s) 984
BciT130I CCWGG 5 cut(s) 206, 362, 516, 639, 721
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 4 cut(s) 776, 780, 908, 1172
BcuI ACTAGT 1 cut(s) 502
BfaI CTAG 2 cut(s) 503, 1244
BfmI CTRYAG 1 cut(s) 735
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 6 cut(s) 191, 206, 362, 516, 639, 721
Bme18I GGWCC 4 cut(s) 89, 234, 724, 1063
BmeT110I CYCGRG 3 cut(s) 98, 140, 777
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 4 cut(s) 89, 234, 724, 1063
BmiI GGNNCC 7 cut(s) 138, 179, 493, 622, 725, 726, 1077
BmrFI CCNGG 6 cut(s) 191, 206, 362, 516, 639, 721
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 4 cut(s) 337, 396, 967, 1018
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 1145
BplI GAGNNNNNCTC 4 cut(s) 230, 262, 890, 922
BpmI CTGGAG 3 cut(s) 344, 537, 555
Bpu14I TTCGAA 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 96, 607
BpuMI CCSGG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 961
BsaHI GRCGYC 2 cut(s) 125, 579
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 2 cut(s) 638, 720
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 128, 158
Bsc4I CCNNNNNNNGG 7 cut(s) 190, 196, 197, 285, 361, 715, 1072
Bse1I ACTGG 4 cut(s) 184, 289, 320, 622
Bse3DI GCAATG 2 cut(s) 444, 753
BseBI CCWGG 5 cut(s) 206, 362, 516, 639, 721
BseCI ATCGAT 1 cut(s) 961
BseDI CCNNGG 2 cut(s) 638, 720
BseGI GGATG 4 cut(s) 162, 352, 704, 1006
BseLI CCNNNNNNNGG 7 cut(s) 190, 196, 197, 285, 361, 715, 1072
BseMI GCAATG 2 cut(s) 444, 753
BseMII CTCAG 2 cut(s) 888, 1296
BseNI ACTGG 4 cut(s) 184, 289, 320, 622
BseRI GAGGAG 2 cut(s) 536, 1244
BseYI CCCAGC 2 cut(s) 196, 250
BsgI GTGCAG 1 cut(s) 1131
BshFI GGCC 3 cut(s) 271, 637, 719
BshNI GGYRCC 1 cut(s) 620
BshVI ATCGAT 1 cut(s) 961
BsiHKAI GWGCWC 3 cut(s) 99, 213, 243
BsiHKCI CYCGRG 3 cut(s) 98, 140, 777
BsiSI CCGG 4 cut(s) 81, 92, 191, 1010
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 7 cut(s) 190, 196, 197, 285, 361, 715, 1072
BsmAI GTCTC 4 cut(s) 776, 780, 908, 1172
BsmFI GGGAC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 3 cut(s) 271, 637, 719
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 3 cut(s) 98, 140, 777
Bsp119I TTCGAA 1 cut(s) 150
Bsp1286I GDGCHC 5 cut(s) 99, 141, 213, 243, 666
Bsp143I GATC 5 cut(s) 177, 701, 787, 849, 924
BspACI CCGC 2 cut(s) 51, 1097
BspANI GGCC 3 cut(s) 271, 637, 719
BspCNI CTCAG 2 cut(s) 889, 1297
BspDI ATCGAT 1 cut(s) 961
BspHI TCATGA 2 cut(s) 421, 712
BspLI GGNNCC 7 cut(s) 138, 179, 493, 622, 725, 726, 1077
BspMAI CTGCAG 1 cut(s) 739
BspPI GGATC 6 cut(s) 172, 185, 709, 782, 844, 932
BspQI GCTCTTC 2 cut(s) 336, 1242
BspT104I TTCGAA 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 908
BsrDI GCAATG 2 cut(s) 444, 753
BsrI ACTGG 4 cut(s) 184, 289, 320, 622
BssECI CCNNGG 2 cut(s) 638, 720
BssMI GATC 5 cut(s) 177, 701, 787, 849, 924
BssNI GRCGYC 2 cut(s) 125, 579
Bst2UI CCWGG 5 cut(s) 206, 362, 516, 639, 721
Bst4CI ACNGT 6 cut(s) 39, 496, 814, 860, 955, 1035
Bst6I CTCTTC 2 cut(s) 336, 1242
BstACI GRCGYC 2 cut(s) 125, 579
BstAPI GCANNNNNTGC 3 cut(s) 650, 1259, 1268
BstBI TTCGAA 1 cut(s) 150
BstC8I GCNNGC 4 cut(s) 123, 411, 655, 948
BstDEI CTNAG 2 cut(s) 897, 1305
BstF5I GGATG 4 cut(s) 162, 352, 704, 1006
BstKTI GATC 5 cut(s) 180, 704, 790, 852, 927
BstMAI GTCTC 4 cut(s) 776, 780, 908, 1172
BstMBI GATC 5 cut(s) 177, 701, 787, 849, 924
BstMWI GCNNNNNNNGC 5 cut(s) 247, 335, 650, 1259, 1268
BstNI CCWGG 5 cut(s) 206, 362, 516, 639, 721
BstNSI RCATGY 3 cut(s) 413, 599, 1046
BstSCI CCNGG 6 cut(s) 189, 204, 360, 514, 637, 719
BstSFI CTRYAG 1 cut(s) 735
BstV2I GAAGAC 1 cut(s) 1145
BstX2I RGATCY 2 cut(s) 177, 787
BstYI RGATCY 2 cut(s) 177, 787
Bsu15I ATCGAT 1 cut(s) 961
BsuRI GGCC 3 cut(s) 271, 637, 719
BsuTUI ATCGAT 1 cut(s) 961
BtgZI GCGATG 1 cut(s) 1028
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 4 cut(s) 162, 352, 704, 1006
BtsI GCAGTG 2 cut(s) 60, 998
BtsIMutI CAGTG 6 cut(s) 60, 104, 865, 998, 1031, 1302
Cac8I GCNNGC 4 cut(s) 123, 411, 655, 948
CaiI CAGNNNCTG 1 cut(s) 1268
CciI TCATGA 2 cut(s) 421, 712
Cfr13I GGNCC 4 cut(s) 89, 234, 724, 1063
ClaI ATCGAT 1 cut(s) 961
CseI GACGC 3 cut(s) 114, 587, 1254
Csp6I GTAC 7 cut(s) 187, 262, 611, 647, 820, 966, 1036
CviAII CATG 9 cut(s) 343, 410, 422, 596, 713, 985, 1043, 1259, 1292
CviQI GTAC 7 cut(s) 187, 262, 611, 647, 820, 966, 1036
DdeI CTNAG 2 cut(s) 897, 1305
DpnI GATC 5 cut(s) 179, 703, 789, 851, 926
DpnII GATC 5 cut(s) 177, 701, 787, 849, 924
Eam1104I CTCTTC 2 cut(s) 336, 1242
EarI CTCTTC 2 cut(s) 336, 1242
Ecl136II GAGCTC 2 cut(s) 97, 241
Eco147I AGGCCT 1 cut(s) 637
Eco24I GRGCYC 4 cut(s) 99, 141, 243, 666
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 4 cut(s) 89, 234, 724, 1063
Eco53kI GAGCTC 2 cut(s) 97, 241
Eco88I CYCGRG 3 cut(s) 98, 140, 777
EcoICRI GAGCTC 2 cut(s) 97, 241
EcoO109I RGGNCCY 2 cut(s) 724, 1063
EcoRII CCWGG 5 cut(s) 204, 360, 514, 637, 719
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 4 cut(s) 99, 141, 243, 666
FaeI CATG 9 cut(s) 346, 413, 425, 599, 716, 988, 1046, 1262, 1295
FalI AAGNNNNNCTT 2 cut(s) 877, 909
FaqI GGGAC 1 cut(s) 737
FatI CATG 9 cut(s) 342, 409, 421, 595, 712, 984, 1042, 1258, 1291
FauNDI CATATG 1 cut(s) 546
FokI GGATG 4 cut(s) 169, 359, 691, 993
FriOI GRGCYC 4 cut(s) 99, 141, 243, 666
FspBI CTAG 2 cut(s) 503, 1244
GsaI CCCAGC 2 cut(s) 200, 254
GsuI CTGGAG 3 cut(s) 344, 537, 555
HaeIII GGCC 3 cut(s) 271, 637, 719
HapII CCGG 4 cut(s) 81, 92, 191, 1010
HgaI GACGC 3 cut(s) 114, 587, 1254
Hin1I GRCGYC 2 cut(s) 125, 579
Hin1II CATG 9 cut(s) 346, 413, 425, 599, 716, 988, 1046, 1262, 1295
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HindIII AAGCTT 1 cut(s) 886
HinfI GANTC 7 cut(s) 101, 109, 201, 245, 425, 797, 1180
HpaII CCGG 4 cut(s) 81, 92, 191, 1010
HphI GGTGA 2 cut(s) 13, 1070
Hpy166II GTNNAC 4 cut(s) 89, 224, 979, 1300
Hpy188I TCNGA 2 cut(s) 898, 1185
Hpy188III TCNNGA 8 cut(s) 113, 232, 422, 586, 713, 777, 779, 801
Hpy8I GTNNAC 4 cut(s) 89, 224, 979, 1300
Hpy99I CGWCG 4 cut(s) 130, 437, 581, 1229
HpyAV CCTTC 2 cut(s) 37, 481
HpyCH4III ACNGT 6 cut(s) 39, 496, 814, 860, 955, 1035
HpyCH4IV ACGT 1 cut(s) 432
HpyF10VI GCNNNNNNNGC 5 cut(s) 247, 335, 650, 1259, 1268
HpyF3I CTNAG 2 cut(s) 897, 1305
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 2 cut(s) 125, 579
Hsp92II CATG 9 cut(s) 346, 413, 425, 599, 716, 988, 1046, 1262, 1295
KflI GGGWCCC 1 cut(s) 724
Kzo9I GATC 5 cut(s) 177, 701, 787, 849, 924
LguI GCTCTTC 2 cut(s) 336, 1242
LmnI GCTCC 7 cut(s) 94, 136, 193, 208, 449, 536, 1247
LweI GCATC 4 cut(s) 337, 396, 967, 1018
MaeI CTAG 2 cut(s) 503, 1244
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 3 cut(s) 102, 527, 808
MalI GATC 5 cut(s) 179, 703, 789, 851, 926
MboI GATC 5 cut(s) 177, 701, 787, 849, 924
MboII GAAGA 7 cut(s) 10, 323, 1030, 1060, 1120, 1150, 1229
MflI RGATCY 2 cut(s) 177, 787
MhlI GDGCHC 5 cut(s) 99, 141, 213, 243, 666
MluCI AATT 2 cut(s) 365, 729
MlyI GAGTC 4 cut(s) 103, 110, 239, 1174
MmeI TCCRAC 1 cut(s) 787
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 2 cut(s) 72, 414
MspA1I CMGCKG 2 cut(s) 47, 1099
MspI CCGG 4 cut(s) 81, 92, 191, 1010
MspR9I CCNGG 6 cut(s) 191, 206, 362, 516, 639, 721
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 5 cut(s) 206, 362, 516, 639, 721
MwoI GCNNNNNNNGC 5 cut(s) 247, 335, 650, 1259, 1268
NciI CCSGG 1 cut(s) 191
NdeI CATATG 1 cut(s) 546
NdeII GATC 5 cut(s) 177, 701, 787, 849, 924
NlaIII CATG 9 cut(s) 346, 413, 425, 599, 716, 988, 1046, 1262, 1295
NlaIV GGNNCC 7 cut(s) 138, 179, 493, 622, 725, 726, 1077
NmuCI GTSAC 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 3 cut(s) 413, 599, 1046
NspV TTCGAA 1 cut(s) 150
PaeI GCATGC 1 cut(s) 413
PaeR7I CTCGAG 2 cut(s) 98, 777
PagI TCATGA 2 cut(s) 421, 712
PceI AGGCCT 1 cut(s) 637
PciI ACATGT 2 cut(s) 595, 1042
PciSI GCTCTTC 2 cut(s) 336, 1242
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 3 cut(s) 201, 425, 797
PfoI TCCNGGA 2 cut(s) 204, 360
PleI GAGTC 4 cut(s) 103, 109, 239, 1174
PpsI GAGTC 4 cut(s) 103, 109, 239, 1174
PpuMI RGGWCCY 2 cut(s) 724, 1063
PscI ACATGT 2 cut(s) 595, 1042
Psp124BI GAGCTC 2 cut(s) 99, 243
Psp5II RGGWCCY 2 cut(s) 724, 1063
Psp6I CCWGG 5 cut(s) 204, 360, 514, 637, 719
PspFI CCCAGC 2 cut(s) 196, 250
PspGI CCWGG 5 cut(s) 204, 360, 514, 637, 719
PspN4I GGNNCC 7 cut(s) 138, 179, 493, 622, 725, 726, 1077
PspPI GGNCC 4 cut(s) 89, 234, 724, 1063
PspPPI RGGWCCY 2 cut(s) 724, 1063
PspXI VCTCGAGB 1 cut(s) 98
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 2 cut(s) 177, 787
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 7 cut(s) 188, 263, 612, 648, 821, 967, 1037
RsaNI GTAC 7 cut(s) 187, 262, 611, 647, 820, 966, 1036
RseI CAYNNNNRTG 2 cut(s) 72, 414
SacI GAGCTC 2 cut(s) 99, 243
SapI GCTCTTC 2 cut(s) 336, 1242
SaqAI TTAA 1 cut(s) 551
Sau3AI GATC 5 cut(s) 177, 701, 787, 849, 924
Sau96I GGNCC 4 cut(s) 89, 234, 724, 1063
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 4 cut(s) 103, 110, 239, 1174
ScrFI CCNGG 6 cut(s) 191, 206, 362, 516, 639, 721
SduI GDGCHC 5 cut(s) 99, 141, 213, 243, 666
SfaNI GCATC 4 cut(s) 337, 396, 967, 1018
SfcI CTRYAG 1 cut(s) 735
Sfr274I CTCGAG 2 cut(s) 98, 777
SfuI TTCGAA 1 cut(s) 150
SinI GGWCC 4 cut(s) 89, 234, 724, 1063
SlaI CTCGAG 2 cut(s) 98, 777
SmiMI CAYNNNNRTG 2 cut(s) 72, 414
SmlI CTYRAG 4 cut(s) 98, 111, 586, 777
SmoI CTYRAG 4 cut(s) 98, 111, 586, 777
SpeI ACTAGT 1 cut(s) 502
SphI GCATGC 1 cut(s) 413
Sse9I AATT 2 cut(s) 365, 729
SseBI AGGCCT 1 cut(s) 637
SsiI CCGC 2 cut(s) 51, 1097
SspMI CTAG 2 cut(s) 503, 1244
SstI GAGCTC 2 cut(s) 99, 243
StuI AGGCCT 1 cut(s) 637
StyD4I CCNGG 6 cut(s) 189, 204, 360, 514, 637, 719
TaaI ACNGT 6 cut(s) 39, 496, 814, 860, 955, 1035
TaiI ACGT 1 cut(s) 435
TaqII GACCGA 1 cut(s) 251
TasI AATT 2 cut(s) 365, 729
TatI WGTACW 1 cut(s) 646
TauI GCSGC 2 cut(s) 53, 1099
TfiI GAWTC 3 cut(s) 201, 425, 797
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 6 cut(s) 60, 111, 865, 1005, 1038, 1309
TseFI GTSAC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 5 cut(s) 50, 973, 1031, 1076, 1247
TspRI CASTG 6 cut(s) 60, 111, 865, 1005, 1038, 1309
VpaK11BI GGWCC 4 cut(s) 89, 234, 724, 1063
XceI RCATGY 3 cut(s) 413, 599, 1046
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XhoI CTCGAG 2 cut(s) 98, 777
XspI CTAG 2 cut(s) 503, 1244
ZrmI AGTACT 1 cut(s) 648
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.