Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004286

Physical Location & Seq

Genomic Coordinates Forward (+)

16175170 .. 16175636

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGTTGTCTTTGGTTCGGTGGGCAACCATGCTTATTTTTCAGCTACTGCTGACTGAGGCTGCAGTTAAGGGTGCAGAGGTTCAAGGCAGTATTGGAAAATTTTTGCATCTTGAAAGGAGGGCAGGATCGATCCTTCAGCTGTGGCTGGGGCTTCCATACTGGCTTCTCTTAGCGCAAGGGCAGAACAATCGCGATGGAAGTCCGCAGCTCAAACCACCAGTAAAGTTCACCCGGGTGCTGAGGTACCAGCTCAGTCTATCATTGAAGATGGTACAGAAGTTGAGCTTGATGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

100

Amino Acids

11.22

Weight (kDa)

10.76

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62130 AT1G62130 AT4G24860 AT4G24860 AT4G24860 AT4G24860
fragaria_vesca	FvH4_5g08070 FvH4_5g08070
malus_domestica	MD06G1143300.v1.1 MD14G1158300.v1.1
prunus_persica	Prupe.5G152500_v2.0.a1 Prupe.5G152500_v2.0.a1
pyrus_communis	pycom06g13290 pycom06g13300 pycom14g13190 pycom14g13200 pycom14g13210
rosa_chinensis	RchiOBHm_Chr7g0190401
rosa_laevigata	RLG00000004536
rosa_multiflora	Rmu_co8223142.1_g000001 Rmu_co8252631.1_g000001 Rmu_co8344673.1_g000001 Rmu_sc0028964.1_g000001 Rmu_sc0028964.1_g000003
rosa_roxburghii	Rroxscaffold_3G00264670
rosa_rugosa	Rorug06G0504400 Rorug06G0504400
rosa_samantha	Rh7AG110200 Rh7BG112700 Rh7CG115000 Rh7DG113200
rosa_wichuraiana	Rw7G009560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	195
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	2 cut(s)	127, 136
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	2 cut(s)	248, 276
AgsI	TTSAA	3 cut(s)	86, 116, 268
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	5 cut(s)	46, 142, 211, 253, 288
AluI	AGCT	5 cut(s)	46, 142, 211, 253, 288
AlwI	GGATC	2 cut(s)	127, 136
AlwNI	CAGNNNCTG	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	62, 208
ApoI	RAATTY	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	235, 236
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	234
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BanI	GGYRCC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	49, 220
BccI	CCATC	3 cut(s)	191, 265, 286
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcnI	CCSGG	2 cut(s)	235, 236
BfaI	CTAG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	63, 209
BlsI	GCNGC	2 cut(s)	64, 210
Bme1390I	CCNGG	2 cut(s)	235, 236
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	235, 236
BmsI	GCATC	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	235, 236
Bsa29I	ATCGAT	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	167, 221
BseCI	ATCGAT	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	48, 233, 268
BseNI	ACTGG	2 cut(s)	167, 221
BseXI	GCAGC	2 cut(s)	49, 220
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	235
BsnI	GGCC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	128, 132
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	3 cut(s)	49, 234, 267
BspDI	ATCGAT	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	2 cut(s)	127, 136
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	167, 221
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	128, 132
BstDEI	CTNAG	4 cut(s)	57, 172, 242, 254
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	131, 135
BstMBI	GATC	2 cut(s)	128, 132
BstSCI	CCNGG	2 cut(s)	233, 234
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	49, 220
Bsu15I	ATCGAT	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	210
BtuMI	TCGCGA	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	247, 275
CviAII	CATG	1 cut(s)	31
CviQI	GTAC	2 cut(s)	247, 275
DdeI	CTNAG	4 cut(s)	57, 172, 242, 254
DpnI	GATC	2 cut(s)	130, 134
DpnII	GATC	2 cut(s)	128, 132
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	234
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 160
FalI	AAGNNNNNCTT	1 cut(s)	272
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	63, 209
Fsp4HI	GCNGC	2 cut(s)	63, 209
FspBI	CTAG	1 cut(s)	298
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	63, 209
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	235
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188III	TCNNGA	2 cut(s)	113, 194
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	65, 77, 109
HpyF3I	CTNAG	4 cut(s)	57, 172, 242, 254
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	176
KpnI	GGTACC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	128, 132
LpnPI	CCDG	6 cut(s)	111, 134, 148, 234, 248, 263
Lsp1109I	GCAGC	2 cut(s)	49, 220
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	298
MalI	GATC	2 cut(s)	130, 134
MboI	GATC	2 cut(s)	128, 132
MboII	GAAGA	1 cut(s)	280
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	4 cut(s)	52, 73, 114, 237
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	235, 236
MvnI	CGCG	1 cut(s)	195
NciI	CCSGG	2 cut(s)	235, 236
NdeII	GATC	2 cut(s)	128, 132
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	248
NruI	TCGCGA	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	64, 210
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	2 cut(s)	248, 276
RsaNI	GTAC	2 cut(s)	247, 275
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	63, 209
Sau3AI	GATC	2 cut(s)	128, 132
ScrFI	CCNGG	2 cut(s)	235, 236
SetI	ASST	7 cut(s)	48, 84, 144, 213, 248, 255, 290
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	63
SmaI	CCCGGG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	233, 234
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	2 cut(s)	62, 208
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	101
XmaI	CCCGGG	1 cut(s)	234
XspI	CTAG	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.