Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8223142.1

Orthogroup ID

OG0004286

Physical Location & Seq

Genomic Coordinates Reverse (-)

4 .. 711

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8223142.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ctggataaggcgacttcctttttggcatggagttcctttcagaagcagagcctgaattcggggagtttcgagttgacaacaccttggtgcaagcttctgtcacagtctggacagaatctaaacatttctatcaccacatcgatttttacaattggttcgagtagaagcagcaatttccctctgaaggataataccattagtgcgtgtctgtgcaagatcaaacgcgaacagcgggagagcggtgctgtaacgattatagaaagtatgggaaacaagggatcactgcaagtaaatggggcgcatgtgaagaaaggcaacagctgcgtgctcaactcaggtgatgaagtggtatttggttctctggggaaccatgcttatgtatcctttatgggttatttccttctctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

136

Amino Acids

14.74

Weight (kDa)

8.99

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62130 AT1G62130 AT4G24860 AT4G24860 AT4G24860 AT4G24860
fragaria_vesca	FvH4_5g08070 FvH4_5g08070
malus_domestica	MD06G1143300.v1.1 MD14G1158300.v1.1
prunus_persica	Prupe.5G152500_v2.0.a1 Prupe.5G152500_v2.0.a1
pyrus_communis	pycom06g13290 pycom06g13300 pycom14g13190 pycom14g13200 pycom14g13210
rosa_chinensis	RchiOBHm_Chr7g0190401
rosa_laevigata	RLG00000004536
rosa_multiflora	Rmu_co8223142.1_g000001 Rmu_co8252631.1_g000001 Rmu_co8344673.1_g000001 Rmu_sc0028964.1_g000001 Rmu_sc0028964.1_g000003
rosa_roxburghii	Rroxscaffold_3G00264670
rosa_rugosa	Rorug06G0504400 Rorug06G0504400
rosa_samantha	Rh7AG110200 Rh7BG112700 Rh7CG115000 Rh7DG113200
rosa_wichuraiana	Rw7G009560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	240
AccII	CGCG	1 cut(s)	225
AciI	CCGC	2 cut(s)	232, 240
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	58, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	94, 321
AluI	AGCT	2 cut(s)	94, 321
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	168, 321
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	124, 350
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	180, 308
BciVI	GTATCC	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	391
BisI	GCNGC	2 cut(s)	169, 322
BlsI	GCNGC	2 cut(s)	170, 323
BmiI	GGNNCC	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 184
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	58, 184
BseMII	CTCAG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	180, 308
Bsh1236I	CGCG	1 cut(s)	225
BshVI	ATCGAT	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	58, 184
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	216, 278
BspACI	CCGC	2 cut(s)	232, 240
BspCNI	CTCAG	1 cut(s)	347
BspDI	ATCGAT	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	216, 278
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	92, 326
BstDEI	CTNAG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	219, 281
BstMBI	GATC	2 cut(s)	216, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	305
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	180, 308
Bsu15I	ATCGAT	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	391
BsuTUI	ATCGAT	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	92, 326
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	301
ClaI	ATCGAT	1 cut(s)	140
CviAII	CATG	3 cut(s)	27, 302, 371
CviJI	RGCY	3 cut(s)	51, 94, 321
CviKI_1	RGCY	3 cut(s)	51, 94, 321
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	2 cut(s)	218, 280
DpnII	GATC	2 cut(s)	216, 278
Eco130I	CCWWGG	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	3 cut(s)	30, 305, 374
FaiI	YATR	7 cut(s)	28, 257, 266, 303, 372, 378, 389
FatI	CATG	3 cut(s)	26, 301, 370
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	169, 322
Fsp4HI	GCNGC	2 cut(s)	169, 322
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	169, 322
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	30, 305, 374
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	2 cut(s)	124, 350
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	42, 183
Hpy188III	TCNNGA	1 cut(s)	108
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	178, 410
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	90, 213, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	30, 305, 374
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	216, 278
LpnPI	CCDG	4 cut(s)	65, 93, 321, 347
Lsp1109I	GCAGC	2 cut(s)	180, 308
MaeIII	GTNAC	2 cut(s)	99, 247
MalI	GATC	2 cut(s)	218, 280
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	2 cut(s)	216, 278
MboII	GAAGA	1 cut(s)	319
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	3 cut(s)	55, 150, 172
MnlI	CCTC	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	85, 375
MspA1I	CMGCKG	2 cut(s)	232, 321
MunI	CAATTG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	321
NdeII	GATC	2 cut(s)	216, 278
NlaIII	CATG	3 cut(s)	30, 305, 374
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	170, 323
PspN4I	GGNNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	321
RseI	CAYNNNNRTG	2 cut(s)	85, 375
SatI	GCNGC	2 cut(s)	169, 322
Sau3AI	GATC	2 cut(s)	216, 278
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	4 cut(s)	85, 96, 323, 340
SmiMI	CAYNNNNRTG	2 cut(s)	85, 375
Sse9I	AATT	3 cut(s)	55, 150, 172
SsiI	CCGC	2 cut(s)	232, 240
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	69, 140, 158
TasI	AATT	3 cut(s)	55, 150, 172
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	168, 321
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	288
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.