Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8252631.1

Orthogroup ID

OG0004286

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 793

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8252631.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 529 bp

aggttcaaagtggtgttggaaaatatctgcaccttgacaggagagccggagatccttcagatgtggatggggcttccatactggcttctcttagcatgagaccagaactatcacgatggaagtctgcggctcagaccaccaataaagtccatccaggggctgaagtaccagctcagtctgttattcgagaaggtacagaagttgagcttgaagaactcgaaggcagcttgaccccaaacagaacaactgacaaaacagaagagatcggaggaatcaacaagagtcttactccggactgcaacccagattcgggtgtagaggcagacaatgtattggaagaaaaaaatgagtggacgagggattcgctgccagcatcaacgtcaggcatgtctgtgcggtgtgctgtttttaaagaaggcattcattcagcaattcttgaaggcaatagcatggatgtttcatttgatgatttcccgtactatttgaggtattcactatatgatctgtttaccatcatgttggtgcatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

176

Amino Acids

19.28

Weight (kDa)

4.63

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62130 AT1G62130 AT4G24860 AT4G24860 AT4G24860 AT4G24860
fragaria_vesca	FvH4_5g08070 FvH4_5g08070
malus_domestica	MD06G1143300.v1.1 MD14G1158300.v1.1
prunus_persica	Prupe.5G152500_v2.0.a1 Prupe.5G152500_v2.0.a1
pyrus_communis	pycom06g13290 pycom06g13300 pycom14g13190 pycom14g13200 pycom14g13210
rosa_chinensis	RchiOBHm_Chr7g0190401
rosa_laevigata	RLG00000004536
rosa_multiflora	Rmu_co8223142.1_g000001 Rmu_co8252631.1_g000001 Rmu_co8344673.1_g000001 Rmu_sc0028964.1_g000001 Rmu_sc0028964.1_g000003
rosa_roxburghii	Rroxscaffold_3G00264670
rosa_rugosa	Rorug06G0504400 Rorug06G0504400
rosa_samantha	Rh7AG110200 Rh7BG112700 Rh7CG115000 Rh7DG113200
rosa_wichuraiana	Rw7G009560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	2 cut(s)	127, 396
AclWI	GGATC	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	41, 182
AfaI	GTAC	3 cut(s)	167, 195, 478
AfiI	CCNNNNNNNGG	3 cut(s)	156, 309, 310
AgsI	TTSAA	3 cut(s)	7, 211, 439
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	172, 207, 227
AluI	AGCT	3 cut(s)	172, 207, 227
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	160
Aor13HI	TCCGGA	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	224, 366
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	185, 218
BbvI	GCAGC	2 cut(s)	236, 353
BccI	CCATC	4 cut(s)	61, 110, 158, 520
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	128, 225, 367
BlsI	GCNGC	3 cut(s)	129, 226, 368
Bme1390I	CCNGG	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 309, 310
Bse1I	ACTGG	1 cut(s)	86
BseAI	TCCGGA	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	72, 150, 459
BseLI	CCNNNNNNNGG	3 cut(s)	156, 309, 310
BseMII	CTCAG	2 cut(s)	145, 187
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	236, 353
BsgI	GTGCAG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	47, 292
BslI	CCNNNNNNNGG	3 cut(s)	156, 309, 310
BsmAI	GTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	51, 263, 501
BspACI	CCGC	2 cut(s)	127, 396
BspCNI	CTCAG	2 cut(s)	144, 186
BspEI	TCCGGA	1 cut(s)	291
BspPI	GGATC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	51, 263, 501
Bst2UI	CCWGG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	3 cut(s)	91, 131, 173
BstF5I	GGATG	3 cut(s)	72, 150, 459
BstKTI	GATC	3 cut(s)	54, 266, 504
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	3 cut(s)	51, 263, 501
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	2 cut(s)	390, 529
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	236, 353
BstX2I	RGATCY	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	72, 150, 459
Cac8I	GCNNGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	166, 194, 477
CviAII	CATG	5 cut(s)	96, 387, 450, 516, 526
CviJI	RGCY	8 cut(s)	46, 73, 85, 130, 160, 172, 207, 227
CviKI_1	RGCY	8 cut(s)	46, 73, 85, 130, 160, 172, 207, 227
CviQI	GTAC	3 cut(s)	166, 194, 477
DdeI	CTNAG	3 cut(s)	91, 131, 173
DpnI	GATC	3 cut(s)	53, 265, 503
DpnII	GATC	3 cut(s)	51, 263, 501
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	41, 182
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	5 cut(s)	99, 390, 453, 519, 529
FaiI	YATR	8 cut(s)	79, 97, 388, 451, 498, 500, 517, 527
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	5 cut(s)	95, 386, 449, 515, 525
Fnu4HI	GCNGC	3 cut(s)	128, 225, 367
FokI	GGATG	3 cut(s)	79, 137, 466
Fsp4HI	GCNGC	3 cut(s)	128, 225, 367
GluI	GCNGC	3 cut(s)	128, 225, 367
HapII	CCGG	2 cut(s)	47, 292
Hin1II	CATG	5 cut(s)	99, 390, 453, 519, 529
HinfI	GANTC	4 cut(s)	272, 282, 307, 361
HpaII	CCGG	2 cut(s)	47, 292
Hpy166II	GTNNAC	2 cut(s)	353, 509
Hpy188I	TCNGA	3 cut(s)	60, 134, 268
Hpy188III	TCNNGA	4 cut(s)	113, 187, 292, 436
Hpy8I	GTNNAC	2 cut(s)	353, 509
HpyAV	CCTTC	5 cut(s)	65, 184, 214, 409, 433
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	30, 299, 525
HpyF3I	CTNAG	3 cut(s)	91, 131, 173
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	5 cut(s)	99, 390, 453, 519, 529
Kpn2I	TCCGGA	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	51, 263, 501
Lsp1109I	GCAGC	2 cut(s)	236, 353
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	379
MalI	GATC	3 cut(s)	53, 265, 503
MboI	GATC	3 cut(s)	51, 263, 501
MboII	GAAGA	3 cut(s)	223, 271, 349
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	4 cut(s)	262, 312, 350, 479
MroI	TCCGGA	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	2 cut(s)	391, 520
MspI	CCGG	2 cut(s)	47, 292
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	51, 263, 501
NlaIII	CATG	5 cut(s)	99, 390, 453, 519, 529
NspI	RCATGY	2 cut(s)	390, 529
PctI	GAATGC	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	3 cut(s)	272, 307, 361
PkrI	GCNGC	3 cut(s)	129, 226, 368
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	3 cut(s)	167, 195, 478
RsaNI	GTAC	3 cut(s)	166, 194, 477
RseI	CAYNNNNRTG	2 cut(s)	391, 520
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	3 cut(s)	128, 225, 367
Sau3AI	GATC	3 cut(s)	51, 263, 501
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	7 cut(s)	35, 174, 195, 209, 229, 382, 490
SfaNI	GCATC	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	391, 520
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	2 cut(s)	127, 396
StyD4I	CCNGG	1 cut(s)	153
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	186, 218
TasI	AATT	1 cut(s)	431
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	272, 307, 361
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseI	GCWGC	2 cut(s)	224, 366
TspDTI	ATGAA	2 cut(s)	412, 449
XceI	RCATGY	2 cut(s)	390, 529
XmnI	GAANNNNTTC	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.