Rmu_co8344673.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8344673.1
OG0004286
Physical Location & Seq
Forward (+)
1 .. 1020
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8344673.1_g000001.1.cds

Sequence Viewer

Length: 455 bp
ccttgcaaagggatccttttatttggtcccccggggacaggcaagacaatgctggcaaaggctgtggctacagaagctggtgcaaacttcatcaacatatccatgtcgagcatcacatctaagtggtttggtgagggtgagaagtatgtgaaagctgttttctctctagctagtaaaattgcccctagtgtcgtatttgttgatgaagttgacagcatgttgggccggcgggaaaatccaggggagcatgaggcaatgcgcaagatgaaaaatgaatttatggtaaattgggatgggctacgaacaaaagaagcagaacgagttctggtacttgcagccacaaataggccttttgaccttgatgaagctgtcattcgaaggctgccccgaaggttgatggtaaatttgccagatgctcccaatagggcaaagatattaagagtcatattggcaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA FHA

Protein Analysis

151

Amino Acids

16.71

Weight (kDa)

9.72

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 260
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 7, 20
AcsI RAATTY 2 cut(s) 275, 403
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 8, 38, 345
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 4 cut(s) 77, 155, 170, 368
AluI AGCT 4 cut(s) 77, 155, 170, 368
AlwI GGATC 2 cut(s) 7, 20
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 2 cut(s) 223, 347
ApeKI GCWGC 2 cut(s) 335, 382
ApoI RAATTY 2 cut(s) 275, 403
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 26, 223
AsuC2I CCSGG 2 cut(s) 32, 33
AsuHPI GGTGA 2 cut(s) 143, 149
AsuII TTCGAA 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 1 cut(s) 26
BamHI GGATCC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 347, 369
BccI CCATC 2 cut(s) 287, 391
BciT130I CCWGG 1 cut(s) 240
BcnI CCSGG 2 cut(s) 32, 33
BfaI CTAG 3 cut(s) 167, 171, 186
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 336, 383
BlsI GCNGC 2 cut(s) 337, 384
Bme1390I CCNGG 3 cut(s) 32, 33, 240
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 26, 223
BmiI GGNNCC 2 cut(s) 14, 28
BmrFI CCNGG 3 cut(s) 32, 33, 240
BmsI GCATC 2 cut(s) 120, 403
Bpu14I TTCGAA 1 cut(s) 376
BpuMI CCSGG 2 cut(s) 32, 33
BsaJI CCNNGG 4 cut(s) 30, 31, 32, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 8, 38, 345
Bse118I RCCGGY 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 30, 31, 32, 239
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 3 cut(s) 8, 38, 345
BseMI GCAATG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 347, 369
BshFI GGCC 2 cut(s) 225, 349
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 2 cut(s) 32, 226
BslFI GGGAC 2 cut(s) 12, 49
BslI CCNNNNNNNGG 3 cut(s) 8, 38, 345
BsmFI GGGAC 2 cut(s) 12, 49
BsnI GGCC 2 cut(s) 225, 349
BsoBI CYCGRG 1 cut(s) 31
Bsp119I TTCGAA 1 cut(s) 376
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 225, 349
BspLI GGNNCC 2 cut(s) 14, 28
BspPI GGATC 2 cut(s) 7, 20
BspT104I TTCGAA 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 4 cut(s) 30, 31, 32, 239
BssMI GATC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 54, 227
BstDEI CTNAG 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 298
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 74, 222
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 30, 31, 238
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 347, 369
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 2 cut(s) 225, 349
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 54, 227
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 26, 223
Cfr9I CCCGGG 1 cut(s) 31
Csp6I GTAC 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 3 cut(s) 103, 217, 248
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 31
EcoNI CCTNNNNNAGG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 238
FaeI CATG 3 cut(s) 106, 220, 251
FaiI YATR 7 cut(s) 98, 104, 147, 218, 249, 281, 446
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 2 cut(s) 12, 49
FatI CATG 3 cut(s) 102, 216, 247
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 336, 383
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 336, 383
FspBI CTAG 3 cut(s) 167, 171, 186
FspI TGCGCA 1 cut(s) 260
GlaI GCGC 1 cut(s) 260
GluI GCNGC 2 cut(s) 336, 383
HaeIII GGCC 2 cut(s) 225, 349
HapII CCGG 2 cut(s) 32, 226
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 106, 220, 251
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 441
HpaII CCGG 2 cut(s) 32, 226
HphI GGTGA 2 cut(s) 143, 149
Hpy166II GTNNAC 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 372, 384
HpyCH4V TGCA 3 cut(s) 6, 83, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 222
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 3 cut(s) 106, 220, 251
HspAI GCGC 1 cut(s) 259
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 244, 421
LpnPI CCDG 9 cut(s) 24, 38, 45, 63, 225, 239, 252, 311, 423
Lsp1109I GCAGC 2 cut(s) 347, 369
LweI GCATC 2 cut(s) 120, 403
MaeI CTAG 3 cut(s) 167, 171, 186
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MflI RGATCY 1 cut(s) 12
MluCI AATT 4 cut(s) 177, 275, 286, 403
MlyI GAGTC 1 cut(s) 450
MnlI CCTC 2 cut(s) 127, 244
MroNI GCCGGC 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 2 cut(s) 101, 121
MspI CCGG 2 cut(s) 32, 226
MspR9I CCNGG 3 cut(s) 32, 33, 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 74, 222
NaeI GCCGGC 1 cut(s) 227
NciI CCSGG 2 cut(s) 32, 33
NdeII GATC 1 cut(s) 12
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 3 cut(s) 106, 220, 251
NlaIV GGNNCC 2 cut(s) 14, 28
NsbI TGCGCA 1 cut(s) 260
NspI RCATGY 1 cut(s) 220
NspV TTCGAA 1 cut(s) 376
PceI AGGCCT 1 cut(s) 349
PdiI GCCGGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 321
PkrI GCNGC 2 cut(s) 337, 384
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 14, 28
PspPI GGNCC 2 cut(s) 26, 223
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 101, 121
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 2 cut(s) 336, 383
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 26, 223
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 3 cut(s) 32, 33, 240
SetI ASST 6 cut(s) 79, 157, 172, 360, 370, 395
SfaNI GCATC 2 cut(s) 120, 403
SfcI CTRYAG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 1 cut(s) 26
SmaI CCCGGG 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 101, 121
Sse9I AATT 4 cut(s) 177, 275, 286, 403
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 1 cut(s) 229
SspMI CTAG 3 cut(s) 167, 171, 186
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 3 cut(s) 30, 31, 238
TaqI TCGA 2 cut(s) 107, 376
TasI AATT 4 cut(s) 177, 275, 286, 403
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseI GCWGC 2 cut(s) 335, 382
TspDTI ATGAA 5 cut(s) 79, 219, 281, 288, 378
TspMI CCCGGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 26
XagI CCTNNNNNAGG 1 cut(s) 6
XapI RAATTY 2 cut(s) 275, 403
XceI RCATGY 1 cut(s) 220
XmaI CCCGGG 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 3 cut(s) 167, 171, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.