Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001955

Physical Location & Seq

Genomic Coordinates Reverse (-)

17602998 .. 17604009

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCAGACTTCACTAGTCTACCAACTTCCATCTGGACTAAAAGAGCTGAAAGAATACACTGTCCAATTGGCCTCTAGTGCTGGCTACATTGATGCCCCTGTTGATGAGACTGTTTTCGATGTGGATAAGGATATTGACAATCTTCTGCCCATTGAAGTAAAAGAGCAACGTCTCAGCAATCTGCTTCAATCATTGATGGCTTGTTGTTGTGTAGGTGCTATGCCTGTTTTGAAAAAAATCCCAACATTAGTTCTTTGGAGGATATTGTTTCTTTTCATTGCTCCAAGTCGAAGATACAAGGTGCTGGAGAAGAATCATGGAGTCTTTCTTAAGACTCTGCCTTTCAAAACAATTGTGACCTTCACATTGTTCCAGATGGCTTACTTGCTTATGTGTTTTGTCCTGGTGCGGCAGTATTTTCTCCCTAAGTTTTTCAAAAGAGCGCACCTTCAAGACCTGGATGCTGCAGAATGTGAGGAAGCCCTTTCCATCACTTTCAACCTGCCCCTTGAAGTGAGTTATCTAAATCCTTTCATTCAGTTCAATGTGAAAAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

187

Amino Acids

21.42

Weight (kDa)

8.23

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47160 AT2G47160 AT3G62270
fragaria_vesca	FvH4_1g26620 FvH4_1g26620 FvH4_1g26620 FvH4_1g26620 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400
malus_domestica	MD06G1173100.v1.1 MD09G1287700.v1.1 MD14G1179400.v1.1 MD17G1279900.v1.1
prunus_persica	Prupe.3G005600_v2.0.a1 Prupe.5G172600_v2.0.a1
pyrus_communis	pycom06g15420 pycom14g14930 pycom14g14940
rosa_chinensis	RchiOBHm_Chr3g0486761 RchiOBHm_Chr7g0193431
rosa_laevigata	RLG00000004268 RLG00000023062
rosa_multiflora	Rmu_sc0006629.1_g000001 Rmu_sc0012783.1_g000009 Rmu_sc0013001.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262090 Rroxscaffold_6G00395610
rosa_rugosa	Rorug03G0227000 Rorug03G0227100 Rorug07G0009500
rosa_samantha	Rh3AG276900 Rh3BG311800 Rh3CG311000 Rh3DG307500 Rh7AG136100 Rh7BG136500 Rh7CG140000 Rh7DG137800
rosa_wichuraiana	Rw3G024620 Rw7G011610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	9 cut(s)	155, 188, 232, 346, 436, 452, 499, 512, 544
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	402, 456
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	101, 176
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	4 cut(s)	37, 190, 370, 497
BciT130I	CCWGG	2 cut(s)	404, 458
BcoDI	GTCTC	2 cut(s)	101, 176
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	2 cut(s)	14, 75
BfmI	CTRYAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	2 cut(s)	410, 465
BlsI	GCNGC	2 cut(s)	411, 466
Bme1390I	CCNGG	2 cut(s)	404, 458
BmrFI	CCNGG	2 cut(s)	404, 458
BmsI	GCATC	2 cut(s)	82, 451
BpmI	CTGGAG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	404, 458
BseGI	GGATG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	101, 176
BsmBI	CGTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	404, 458
Bst4CI	ACNGT	2 cut(s)	61, 112
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	173, 426
BstF5I	GGATG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	445
BstMAI	GTCTC	2 cut(s)	101, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	2 cut(s)	404, 458
BstSCI	CCNGG	2 cut(s)	402, 456
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	445
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	6 cut(s)	46, 71, 84, 200, 380, 482
CviKI_1	RGCY	6 cut(s)	46, 71, 84, 200, 380, 482
DdeI	CTNAG	2 cut(s)	173, 426
EcoRII	CCWGG	2 cut(s)	402, 456
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	1 cut(s)	320
FaiI	YATR	3 cut(s)	221, 318, 392
FatI	CATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	410, 465
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	410, 465
FspBI	CTAG	2 cut(s)	14, 75
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	2 cut(s)	410, 465
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	3 cut(s)	313, 321, 334
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188III	TCNNGA	3 cut(s)	33, 373, 452
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	370, 458
HpyCH4III	ACNGT	2 cut(s)	61, 112
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	4, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	173, 426
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	443
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	82, 451
MaeI	CTAG	2 cut(s)	14, 75
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	355
MboII	GAAGA	3 cut(s)	134, 303, 322
MfeI	CAATTG	2 cut(s)	65, 351
MluCI	AATT	3 cut(s)	65, 351, 554
MlyI	GAGTC	2 cut(s)	328, 330
MnlI	CCTC	3 cut(s)	82, 252, 469
MseI	TTAA	1 cut(s)	330
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	404, 458
MunI	CAATTG	2 cut(s)	65, 351
MvaI	CCWGG	2 cut(s)	404, 458
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	411, 466
PleI	GAGTC	2 cut(s)	328, 329
PpsI	GAGTC	2 cut(s)	328, 329
Psp6I	CCWGG	2 cut(s)	402, 456
PspGI	CCWGG	2 cut(s)	402, 456
PstI	CTGCAG	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	410, 465
SchI	GAGTC	2 cut(s)	328, 330
ScrFI	CCNGG	2 cut(s)	404, 458
SetI	ASST	8 cut(s)	48, 172, 217, 303, 362, 450, 459, 504
SfaNI	GCATC	2 cut(s)	82, 451
SfcI	CTRYAG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	3 cut(s)	65, 351, 554
SsiI	CCGC	1 cut(s)	409
SspMI	CTAG	2 cut(s)	14, 75
StyD4I	CCNGG	2 cut(s)	402, 456
TaaI	ACNGT	2 cut(s)	61, 112
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	117, 289
TasI	AATT	3 cut(s)	65, 351, 554
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	265, 523
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	14, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.