Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001955

Physical Location & Seq

Genomic Coordinates Reverse (-)

20877145 .. 20878752

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0227100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGAGGAATTCGTGCTAGGAGAAGATGACTACACCATTACAGACGGTAAGCTTGGCCCTAATATTCGTTTTTCGCAGCGAGTAGAAGATAAACTTGATTTAGATTGGAATTGTGCTGTGATTATCTATCTGAACTATGCTCTTTGCAATGGTCCCTGGATCATTGCTAGGCAGACTCTTGTGGGGCAAAAATGGAGACCGGATTTTGATCCATATGCATATAAGATTACTCATATGGCTGTCTGGGTGCAAATTAATGGGTTACCTGTGAAGTATTTTAAGCAATTCACCATGGAAAGGATTGGAAGCATGATAGGCAAGGTAGTTAAGGTTGATCAACACACTTTAGCTCAAGCCAGGGGTAAATTTTGCAGGGTTTGTGTTGAAATCAATCTAGCTGAGCCTTTGAAACCTTTTGTTGAAGTGGATTCCAGACCTTTCAGTGTTGTTTATGAAGGTATCTCAACCATCTGTTTCAATTGTGGAGTTTATGGTCATGTTAAGGAGCATTGTCCTTATGTGAGAGAGGTAGCAAATGCTGAGGAAGGTTCGGAAGCAGTGAACAATAAGGGATGCAGTCCCCTTTGTGGTGATAATTCTGTAACGAAGACCGACAGTAGTATACCGATTCCTGAGAACGTTACACAGGCTAGTCCTCATATTGCTCCATCTACTACAAAGTGCGCAGTCAAGAGTAACATGGGACCATGGATGATCATGAACTATCAGAAGAAAAAGACGATGAGTAATGCTCAAAGTGAAGATGTTAAGGAGAAGAACCTGGGTCCAGATTTGCTCCTTTGCAGGCAGAGAATGATATGGAAGCAATTGCAAGAGAAAACTGAGAAATCCTTACCTAAGGAGAGTACAATGAAGGAGAAGGCTGTTGTCAAAAACCCGGAGCATTCTGATGCAATGCCTAATCCTATGAGAGGGAGAACTCCTTTACAGGAGATTTCCAATGCCAAGCCTGCTCCTAGTAAAACTAGACTTGCTTCAAAAACTAGAAGTGCAATTGGAAAGGGTACAAAGGATAATTTTCCCAGTAGTTCCAAGAGTTTAGCCTCTTCATCCATAATGCAGGAGGTATTTAAGACTGGGTTCACTGAATTTAGTAATATGTTGAAAGCTGGTCAATATAGAAACCAAATTATTTCCTCTACTGATGCTGAGTTTGGACACACACCACCTGAGAAGGGTTTAAACCAAGAAGATGTTGATGGTGACTGTGTGTTGGTTAATATCGGTGACGAGGATCATCAAAGTCCTAGTGACTCATCTACTTCTTTGCCGGCTTCTGCTACTGACAATGCTGGTATGCAGTCCAATCTATCCTCTCAGAAGGGAGAGTATATGATTGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

455

Amino Acids

50.49

Weight (kDa)

6.72

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47160 AT2G47160 AT3G62270
fragaria_vesca	FvH4_1g26620 FvH4_1g26620 FvH4_1g26620 FvH4_1g26620 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400
malus_domestica	MD06G1173100.v1.1 MD09G1287700.v1.1 MD14G1179400.v1.1 MD17G1279900.v1.1
prunus_persica	Prupe.3G005600_v2.0.a1 Prupe.5G172600_v2.0.a1
pyrus_communis	pycom06g15420 pycom14g14930 pycom14g14940
rosa_chinensis	RchiOBHm_Chr3g0486761 RchiOBHm_Chr7g0193431
rosa_laevigata	RLG00000004268 RLG00000023062
rosa_multiflora	Rmu_sc0006629.1_g000001 Rmu_sc0012783.1_g000009 Rmu_sc0013001.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262090 Rroxscaffold_6G00395610
rosa_rugosa	Rorug03G0227000 Rorug03G0227100 Rorug07G0009500
rosa_samantha	Rh3AG276900 Rh3BG311800 Rh3CG311000 Rh3DG307500 Rh7AG136100 Rh7BG136500 Rh7CG140000 Rh7DG137800
rosa_wichuraiana	Rw3G024620 Rw7G011610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	622
AclI	AACGTT	1 cut(s)	639
AclWI	GGATC	3 cut(s)	167, 203, 1263
AcsI	RAATTY	3 cut(s)	8, 365, 1109
AfaI	GTAC	2 cut(s)	868, 1027
AfiI	CCNNNNNNNGG	4 cut(s)	297, 587, 932, 1196
AgsI	TTSAA	6 cut(s)	386, 409, 422, 478, 999, 1126
AjnI	CCWGG	3 cut(s)	155, 356, 780
AluBI	AGCT	4 cut(s)	52, 350, 398, 1130
AluI	AGCT	4 cut(s)	52, 350, 398, 1130
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	167, 203, 1263
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	3 cut(s)	8, 365, 1109
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	4 cut(s)	56, 152, 704, 785
AsuC2I	CCSGG	1 cut(s)	899
AsuHPI	GGTGA	4 cut(s)	280, 602, 1235, 1259
AvaII	GGWCC	3 cut(s)	152, 704, 785
AxyI	CCTNAGG	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	614
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	3 cut(s)	476, 676, 1214
BciT130I	CCWGG	3 cut(s)	157, 358, 782
BclI	TGATCA	2 cut(s)	334, 714
BcnI	CCSGG	1 cut(s)	899
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	8 cut(s)	17, 168, 395, 651, 978, 987, 1005, 1269
BisI	GCNGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	4 cut(s)	157, 358, 782, 899
Bme18I	GGWCC	3 cut(s)	152, 704, 785
BmgT120I	GGNCC	4 cut(s)	56, 152, 704, 785
BmiI	GGNNCC	3 cut(s)	154, 705, 786
BmrFI	CCNGG	4 cut(s)	157, 358, 782, 899
BmrI	ACTGGG	2 cut(s)	1038, 1107
BmsI	GCATC	3 cut(s)	563, 901, 1156
BmuI	ACTGGG	2 cut(s)	1038, 1107
BpiI	GAAGAC	1 cut(s)	614
BplI	GAGNNNNNCTC	2 cut(s)	736, 768
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	5 cut(s)	155, 291, 357, 707, 781
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 587, 932, 1196
Bse118I	RCCGGY	1 cut(s)	1291
Bse1I	ACTGG	2 cut(s)	1044, 1102
Bse21I	CCTNAGG	1 cut(s)	858
Bse3DI	GCAATG	3 cut(s)	154, 162, 921
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	157, 358, 782
BseDI	CCNNGG	5 cut(s)	155, 291, 357, 707, 781
BseGI	GGATG	3 cut(s)	578, 717, 1070
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	4 cut(s)	297, 587, 932, 1196
BseMI	GCAATG	3 cut(s)	154, 162, 921
BseMII	CTCAG	7 cut(s)	390, 531, 624, 834, 1161, 1182, 1352
BseNI	ACTGG	2 cut(s)	1044, 1102
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	200, 899, 1292
BslFI	GGGAC	3 cut(s)	138, 564, 717
BslI	CCNNNNNNNGG	4 cut(s)	297, 587, 932, 1196
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	3 cut(s)	138, 564, 717
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	190
Bsp143I	GATC	5 cut(s)	159, 208, 334, 714, 1255
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	2 cut(s)	291, 707
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	7 cut(s)	391, 532, 625, 835, 1162, 1183, 1351
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	3 cut(s)	154, 705, 786
BspPI	GGATC	3 cut(s)	167, 203, 1263
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	3 cut(s)	154, 162, 921
BsrFI	RCCGGY	1 cut(s)	1291
BsrI	ACTGG	2 cut(s)	1044, 1102
BssAI	RCCGGY	1 cut(s)	1291
BssECI	CCNNGG	5 cut(s)	155, 291, 357, 707, 781
BssMI	GATC	5 cut(s)	159, 208, 334, 714, 1255
BssNAI	GTATAC	1 cut(s)	623
BssT1I	CCWWGG	2 cut(s)	291, 707
Bst1107I	GTATAC	1 cut(s)	623
Bst2UI	CCWGG	3 cut(s)	157, 358, 782
Bst4CI	ACNGT	3 cut(s)	47, 617, 1229
Bst6I	CTCTTC	1 cut(s)	1072
BstC8I	GCNNGC	3 cut(s)	806, 972, 1293
BstDEI	CTNAG	8 cut(s)	399, 540, 633, 843, 858, 1170, 1191, 1338
BstDSI	CCRYGG	2 cut(s)	291, 707
BstEII	GGTNACC	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	930
BstF5I	GGATG	3 cut(s)	578, 717, 1070
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	5 cut(s)	162, 211, 337, 717, 1258
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	5 cut(s)	159, 208, 334, 714, 1255
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 971
BstNI	CCWGG	3 cut(s)	157, 358, 782
BstPI	GGTNACC	1 cut(s)	261
BstSCI	CCNGG	4 cut(s)	155, 356, 780, 897
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	614
BstZ17I	GTATAC	1 cut(s)	623
Bsu36I	CCTNAGG	1 cut(s)	858
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	2 cut(s)	291, 707
BtsCI	GGATG	3 cut(s)	578, 717, 1070
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	448, 564, 1104
Cac8I	GCNNGC	3 cut(s)	806, 972, 1293
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	1291
Cfr13I	GGNCC	4 cut(s)	56, 152, 704, 785
Csp6I	GTAC	2 cut(s)	867, 1026
CviAII	CATG	6 cut(s)	292, 310, 497, 700, 708, 718
CviQI	GTAC	2 cut(s)	867, 1026
DdeI	CTNAG	8 cut(s)	399, 540, 633, 843, 858, 1170, 1191, 1338
DpnI	GATC	5 cut(s)	161, 210, 336, 716, 1257
DpnII	GATC	5 cut(s)	159, 208, 334, 714, 1255
DraI	TTTAAA	1 cut(s)	1203
Eam1104I	CTCTTC	1 cut(s)	1072
EarI	CTCTTC	1 cut(s)	1072
Eco130I	CCWWGG	2 cut(s)	291, 707
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	152, 704, 785
Eco81I	CCTNAGG	1 cut(s)	858
Eco91I	GGTNACC	1 cut(s)	261
EcoNI	CCTNNNNNAGG	1 cut(s)	930
EcoO65I	GGTNACC	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	3 cut(s)	155, 356, 780
EcoT14I	CCWWGG	2 cut(s)	291, 707
EcoT22I	ATGCAT	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	291, 707
FaeI	CATG	6 cut(s)	295, 313, 500, 703, 711, 721
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	3 cut(s)	138, 564, 717
FatI	CATG	6 cut(s)	291, 309, 496, 699, 707, 717
FauNDI	CATATG	2 cut(s)	214, 234
FbaI	TGATCA	2 cut(s)	334, 714
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	3 cut(s)	585, 724, 1057
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	8 cut(s)	17, 168, 395, 651, 978, 987, 1005, 1269
FspI	TGCGCA	1 cut(s)	685
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	3 cut(s)	200, 899, 1292
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	6 cut(s)	295, 313, 500, 703, 711, 721
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	4 cut(s)	175, 428, 628, 1274
HpaII	CCGG	3 cut(s)	200, 899, 1292
HphI	GGTGA	4 cut(s)	280, 602, 1235, 1259
Hpy166II	GTNNAC	3 cut(s)	562, 623, 1104
Hpy188I	TCNGA	5 cut(s)	132, 553, 729, 910, 1341
Hpy188III	TCNNGA	6 cut(s)	432, 632, 691, 718, 788, 1365
Hpy8I	GTNNAC	3 cut(s)	562, 623, 1104
HpyAV	CCTTC	6 cut(s)	449, 539, 868, 874, 1189, 1336
HpyCH4III	ACNGT	3 cut(s)	47, 617, 1229
HpyCH4IV	ACGT	1 cut(s)	639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 971
HpyF3I	CTNAG	8 cut(s)	399, 540, 633, 843, 858, 1170, 1191, 1338
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	6 cut(s)	295, 313, 500, 703, 711, 721
HspAI	GCGC	1 cut(s)	684
KroI	GCCGGC	1 cut(s)	1291
KroNI	GCCGGC	1 cut(s)	1293
Ksp22I	TGATCA	2 cut(s)	334, 714
Kzo9I	GATC	5 cut(s)	159, 208, 334, 714, 1255
LmnI	GCTCC	5 cut(s)	505, 670, 801, 901, 979
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	3 cut(s)	563, 901, 1156
MaeI	CTAG	8 cut(s)	17, 168, 395, 651, 978, 987, 1005, 1269
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	7 cut(s)	261, 601, 640, 695, 1223, 1247, 1271
MalI	GATC	5 cut(s)	161, 210, 336, 716, 1257
MboI	GATC	5 cut(s)	159, 208, 334, 714, 1255
MboII	GAAGA	8 cut(s)	35, 98, 619, 742, 773, 787, 1059, 1223
MfeI	CAATTG	3 cut(s)	478, 827, 1014
MlyI	GAGTC	2 cut(s)	169, 1268
MnlI	CCTC	9 cut(s)	520, 535, 666, 926, 1075, 1078, 1168, 1246, 1345
Mph1103I	ATGCAT	1 cut(s)	220
MroNI	GCCGGC	1 cut(s)	1291
MseI	TTAA	8 cut(s)	255, 279, 327, 501, 768, 1092, 1202, 1239
MslI	CAYNNNNRTG	1 cut(s)	909
MspI	CCGG	3 cut(s)	200, 899, 1292
MspR9I	CCNGG	4 cut(s)	157, 358, 782, 899
MssI	GTTTAAAC	1 cut(s)	1203
MunI	CAATTG	3 cut(s)	478, 827, 1014
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	3 cut(s)	157, 358, 782
MwoI	GCNNNNNNNGC	2 cut(s)	315, 971
NaeI	GCCGGC	1 cut(s)	1293
NciI	CCSGG	1 cut(s)	899
NcoI	CCATGG	2 cut(s)	291, 707
NdeI	CATATG	2 cut(s)	214, 234
NdeII	GATC	5 cut(s)	159, 208, 334, 714, 1255
NgoMIV	GCCGGC	1 cut(s)	1291
NlaIII	CATG	6 cut(s)	295, 313, 500, 703, 711, 721
NlaIV	GGNNCC	3 cut(s)	154, 705, 786
NmuCI	GTSAC	3 cut(s)	1223, 1247, 1271
NsbI	TGCGCA	1 cut(s)	685
NsiI	ATGCAT	1 cut(s)	220
PagI	TCATGA	1 cut(s)	717
PctI	GAATGC	1 cut(s)	904
PdiI	GCCGGC	1 cut(s)	1293
PfeI	GAWTC	2 cut(s)	428, 628
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	2 cut(s)	169, 1268
PmeI	GTTTAAAC	1 cut(s)	1203
PpsI	GAGTC	2 cut(s)	169, 1268
PshBI	ATTAAT	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	639
Psp6I	CCWGG	3 cut(s)	155, 356, 780
PspEI	GGTNACC	1 cut(s)	261
PspGI	CCWGG	3 cut(s)	155, 356, 780
PspN4I	GGNNCC	3 cut(s)	154, 705, 786
PspPI	GGNCC	4 cut(s)	56, 152, 704, 785
RsaI	GTAC	2 cut(s)	868, 1027
RsaNI	GTAC	2 cut(s)	867, 1026
RseI	CAYNNNNRTG	1 cut(s)	909
SaqAI	TTAA	8 cut(s)	255, 279, 327, 501, 768, 1092, 1202, 1239
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	5 cut(s)	159, 208, 334, 714, 1255
Sau96I	GGNCC	4 cut(s)	56, 152, 704, 785
SchI	GAGTC	2 cut(s)	169, 1268
ScrFI	CCNGG	4 cut(s)	157, 358, 782, 899
SfaNI	GCATC	3 cut(s)	563, 901, 1156
SinI	GGWCC	3 cut(s)	152, 704, 785
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	8 cut(s)	17, 168, 395, 651, 978, 987, 1005, 1269
StyD4I	CCNGG	4 cut(s)	155, 356, 780, 897
StyI	CCWWGG	2 cut(s)	291, 707
TaaI	ACNGT	3 cut(s)	47, 617, 1229
TaiI	ACGT	1 cut(s)	642
TaqII	GACCGA	1 cut(s)	626
TatI	WGTACW	1 cut(s)	866
TfiI	GAWTC	2 cut(s)	428, 628
Tru1I	TTAA	8 cut(s)	255, 279, 327, 501, 768, 1092, 1202, 1239
Tru9I	TTAA	8 cut(s)	255, 279, 327, 501, 768, 1092, 1202, 1239
TscAI	CASTG	3 cut(s)	448, 564, 1111
TseFI	GTSAC	3 cut(s)	1223, 1247, 1271
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	3 cut(s)	1223, 1247, 1271
TspDTI	ATGAA	4 cut(s)	468, 734, 887, 1059
TspRI	CASTG	3 cut(s)	448, 564, 1111
VpaK11BI	GGWCC	3 cut(s)	152, 704, 785
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	930
XapI	RAATTY	3 cut(s)	8, 365, 1109
XmiI	GTMKAC	1 cut(s)	622
XspI	CTAG	8 cut(s)	17, 168, 395, 651, 978, 987, 1005, 1269
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.