Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001955

Physical Location & Seq

Genomic Coordinates Reverse (-)

10858259 .. 10863703

Gene Structure 5445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG136100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGTTTATATTTACAGATGGAACTTTGACTGCAGTACAGACTCTTGCATCAACTGCAATTTGTGGTGTTATCCATTCAGTTGTTGGAGGGCAGCCCCTGCTCATACTAGGGGTGGCTGAACCAACAGTATTGATGTATACATTTATGTTCAACTTTGCTAAGGACCGAAAGGATTTGGGACAGGAACTCTTTTTAGCTTGGACTGGATGGGTATGTGTGTGGACATCCATTTTGCTCTTCTTGCTGGCCATTCTGGGTGCTTGCTCTATAATCAATAGGTTTACACGTATTGCTGGTGAATTATTTGGTCTTCTTATCGCAATGCTTTTTATGCAGCAGGCCATAAGAGGAGTTGTAGAGGAATTTGGCGTACCTGAAAGAGAAAAGCCAAATCAGACTGCACTCCTACCTTCTTGGAGGTTTGGCAATGGAATGTTTGCATTAGTTCTGTCATTTGGCCTTCTATTTACTGCATTGAGAAGTCGTAAAGCTAGATCGTGGCGTTATGGCACAGGTTGGCTACGTGGATTTATAGCGGATTATGGAGTCCCACTTATGGTTCTTGTATGGACTGCTGTGTCTTACATACCGGTTAATGATGTCCCAAAAGGAATCCCAAGACGACTTTTCAGTCCAAATCCATGGTCTCCTGGTGCATACTCAAATTGGACAGTTATCAAGGAGATGATGACTGTTCCTCCTTTATATATAGTTGGAGCATTTATACCAGCAACTATGATTGCTGTGCTCTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAGGAGTTTAATCTAAAGAAACCAGCTTCATATCACTATGACCTTCTGCTTCTCGGATTTCTGGTCATATTGTGTGGGCTTATTGGCATTCCCCCTGCCAATGGTGTAATTCCACAATCTCCTATGCATACAAAAAGTTTAGCTACTCTAAAACATCAGCTTTTGCGGAATAAGCTTGTAGTAACAGCAAGGAATAGTATACGCAAAAACTCAACTTTGAGTCAATTATACCACAACATGCAAGAAGCATACAATGAAATGCAGACTCCACTAGTCTACCAACGTCCATCTGCTCTGGGACTAAAAGAGCTGAAAGAATCCACAGTCCAATTAGCCTCAAGTACTGGCTACATTGATGCCCCTGTTGATGAAACCGTTTTTGATGTGGATAAGGATATTGATGATCTTTTACCTATTGAAGTAAAAGAGCAACGCCTCAGCAATGTGCTTCAGGCATTGCTGGCTGGTGGTTGTGTAGCTGCTATGCCTCTTTTGAAGAAAATCCCAACCTCAGTTCTTTGGGGTTATTTTGCTTTTATGGCAATTGAAAGCTTGCCTGGAAACCAATTCTGGGAGAGAATATTGTTTCTTTTCACTGCTCCAAGTCGAAGATACAAGGTGCTGGAGAAGTATCATGGAACCTTTCTTGAGACTGTGCCTTTTAAAACAATTGCGACCTTCACCTTGTTCCAGACAGCTTACTTGCTTCTGTGTTTTGGCATAACATGGATCCCAATTGCCGGGGTGCTCTTCCCGTTGTTGATCATGCTTCTAGTCCCAGTGCGGCAGTATTTGCTCCCTAAGTTTTTTAAAAGGGCTCACCTTCAAGACCTGGATGCTGCAGAATACGAGGAAGCCCCTGCCATTGCTTTCAACATGTCCTTTGAAGATCAGGATGTTCATGCAAGAATAAATAACATTGATGGTGGGGAGATACTTGATGAAATTATTACAAGAAGCCGCGGGGAGATCCGCCGCACTCAGAGTCCAAAAGTATCAAGTTTGACCTCTACTTCTTCACTAGAAGGTATAAAATCAGCTTATAGCCCAAGGTTAACGCAGAGAGTATACAGCCCCCGTTTAAATGAACTGAGAGGAGAAAGAAGCCCCCGACTAAATGTACAAGGTCACGAAACAGAAAACACTCCCAGCCCCCATTTGAATGAACTAAGAGGAGAACAAAGCCTCGGGCATGGTCAGGGAATCGAAACAGTGCAGACTCCCAGCCCTGGACCATCTGTCCTCGGACAAAGCACTTCTGGTTGTTCAAGCCACAAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0009987 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

691

Amino Acids

77.07

Weight (kDa)

8.84

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCO3_cotransp	PF00955	5 - 123	9.4e-20	HCO3- transporter integral membrane domain
HCO3_cotransp	PF00955	145 - 315	2.7e-24	HCO3- transporter integral membrane domain
HCO3_cotransp	PF00955	403 - 545	1.1e-28	HCO3- transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47160 AT2G47160 AT3G62270
fragaria_vesca	FvH4_1g26620 FvH4_1g26620 FvH4_1g26620 FvH4_1g26620 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400 FvH4_5g05400
malus_domestica	MD06G1173100.v1.1 MD09G1287700.v1.1 MD14G1179400.v1.1 MD17G1279900.v1.1
prunus_persica	Prupe.3G005600_v2.0.a1 Prupe.5G172600_v2.0.a1
pyrus_communis	pycom06g15420 pycom14g14930 pycom14g14940
rosa_chinensis	RchiOBHm_Chr3g0486761 RchiOBHm_Chr7g0193431
rosa_laevigata	RLG00000004268 RLG00000023062
rosa_multiflora	Rmu_sc0006629.1_g000001 Rmu_sc0012783.1_g000009 Rmu_sc0013001.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262090 Rroxscaffold_6G00395610
rosa_rugosa	Rorug03G0227000 Rorug03G0227100 Rorug07G0009500
rosa_samantha	Rh3AG276900 Rh3BG311800 Rh3CG311000 Rh3DG307500 Rh7AG136100 Rh7BG136500 Rh7CG140000 Rh7DG137800
rosa_wichuraiana	Rw3G024620 Rw7G011610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	577, 630
AccI	GTMKAC	4 cut(s)	137, 991, 1068, 1860
AccII	CGCG	1 cut(s)	1755
AciI	CCGC	7 cut(s)	536, 958, 1576, 1753, 1755, 1765, 1768
AclWI	GGATC	3 cut(s)	1516, 1529, 1756
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	1226
AfaI	GTAC	4 cut(s)	36, 372, 1135, 1914
AfiI	CCNNNNNNNGG	6 cut(s)	556, 793, 893, 1363, 1532, 2021
AflIII	ACRYGT	2 cut(s)	284, 1668
AgeI	ACCGGT	1 cut(s)	589
AgsI	TTSAA	9 cut(s)	151, 1211, 1288, 1340, 1619, 1666, 1679, 1954, 2061
AhdI	GACNNNNNGTC	1 cut(s)	2030
AhlI	ACTAGT	1 cut(s)	1063
AjnI	CCWGG	4 cut(s)	649, 1348, 1623, 2020
Alw21I	GWGCWC	2 cut(s)	750, 1542
Alw26I	GTCTC	2 cut(s)	651, 1436
AlwI	GGATC	3 cut(s)	1516, 1529, 1756
AlwNI	CAGNNNCTG	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	1979
AoxI	GGCC	3 cut(s)	246, 339, 457
ApeKI	GCWGC	4 cut(s)	91, 334, 1271, 1631
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	4 cut(s)	214, 246, 629, 661
AsiGI	ACCGGT	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	163, 2024
AsuC2I	CCSGG	1 cut(s)	1534
AsuHPI	GGTGA	3 cut(s)	308, 1465, 1604
AvaI	CYCGRG	1 cut(s)	1979
AvaII	GGWCC	2 cut(s)	163, 2024
BalI	TGGCCA	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	1521
BanII	GRGCYC	1 cut(s)	1612
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	750, 1542
BbvCI	CCTCAGC	1 cut(s)	1229
BbvI	GCAGC	4 cut(s)	103, 346, 1258, 1618
BccI	CCATC	5 cut(s)	11, 201, 1087, 1709, 2035
BciT130I	CCWGG	4 cut(s)	651, 1350, 1625, 2022
BclI	TGATCA	2 cut(s)	760, 1554
BcnI	CCSGG	1 cut(s)	1534
BcoDI	GTCTC	2 cut(s)	651, 1436
BcuI	ACTAGT	1 cut(s)	1063
BfaI	CTAG	6 cut(s)	107, 492, 1064, 1565, 1814, 2074
BfmI	CTRYAG	2 cut(s)	30, 1632
BisI	GCNGC	7 cut(s)	92, 335, 1272, 1577, 1632, 1753, 1768
BlsI	GCNGC	7 cut(s)	93, 336, 1273, 1578, 1633, 1754, 1769
BmcAI	AGTACT	1 cut(s)	1135
Bme1390I	CCNGG	5 cut(s)	651, 1350, 1534, 1625, 2022
Bme18I	GGWCC	2 cut(s)	163, 2024
BmeRI	GACNNNNNGTC	1 cut(s)	2030
BmeT110I	CYCGRG	1 cut(s)	1979
BmgT120I	GGNCC	2 cut(s)	163, 2024
BmiI	GGNNCC	2 cut(s)	1432, 1523
BmrFI	CCNGG	5 cut(s)	651, 1350, 1534, 1625, 2022
BmrI	ACTGGG	1 cut(s)	1565
BmsI	GCATC	4 cut(s)	56, 782, 1138, 1618
BmuI	ACTGGG	1 cut(s)	1565
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	1436
Bpu10I	CCTNAGC	2 cut(s)	159, 1229
BpuEI	CTTGAG	2 cut(s)	1114, 1460
BpuMI	CCSGG	1 cut(s)	1534
BsaAI	YACGTR	2 cut(s)	287, 524
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	7 cut(s)	641, 1533, 1753, 1841, 1978, 2020, 2035
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	6 cut(s)	556, 793, 893, 1363, 1532, 2021
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	3 cut(s)	208, 1141, 1571
Bse3DI	GCAATG	5 cut(s)	327, 433, 1240, 1247, 1656
BseBI	CCWGG	4 cut(s)	651, 1350, 1625, 2022
BseDI	CCNNGG	7 cut(s)	641, 1533, 1753, 1841, 1978, 2020, 2035
BseGI	GGATG	4 cut(s)	212, 224, 1633, 1693
BseLI	CCNNNNNNNGG	6 cut(s)	556, 793, 893, 1363, 1532, 2021
BseMI	GCAATG	5 cut(s)	327, 433, 1240, 1247, 1656
BseMII	CTCAG	4 cut(s)	1243, 1317, 1787, 1874
BseNI	ACTGG	3 cut(s)	208, 1141, 1571
BseRI	GAGGAG	3 cut(s)	363, 1902, 1980
BseXI	GCAGC	4 cut(s)	103, 346, 1258, 1618
BseYI	CCCAGC	2 cut(s)	1940, 2015
BsgI	GTGCAG	2 cut(s)	384, 2027
Bsh1236I	CGCG	1 cut(s)	1755
BshFI	GGCC	3 cut(s)	248, 341, 459
BshTI	ACCGGT	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	750, 1542
BsiHKCI	CYCGRG	1 cut(s)	1979
BsiSI	CCGG	2 cut(s)	590, 1533
BslFI	GGGAC	5 cut(s)	192, 533, 587, 1104, 1553
BslI	CCNNNNNNNGG	6 cut(s)	556, 793, 893, 1363, 1532, 2021
BsmAI	GTCTC	2 cut(s)	651, 1436
BsmFI	GGGAC	5 cut(s)	192, 533, 587, 1104, 1553
BsmI	GAATGC	1 cut(s)	879
BsnI	GGCC	3 cut(s)	248, 341, 459
Bso31I	GGTCTC	1 cut(s)	651
BsoBI	CYCGRG	1 cut(s)	1979
Bsp1286I	GDGCHC	3 cut(s)	750, 1542, 1612
Bsp1407I	TGTACA	1 cut(s)	1912
Bsp143I	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	7 cut(s)	536, 958, 1576, 1753, 1755, 1765, 1768
BspANI	GGCC	3 cut(s)	248, 341, 459
BspCNI	CTCAG	4 cut(s)	1242, 1316, 1786, 1875
BspFNI	CGCG	1 cut(s)	1755
BspLI	GGNNCC	2 cut(s)	1432, 1523
BspMAI	CTGCAG	2 cut(s)	34, 1636
BspPI	GGATC	3 cut(s)	1516, 1529, 1756
BspQI	GCTCTTC	2 cut(s)	242, 1547
BspTNI	GGTCTC	1 cut(s)	651
BsrDI	GCAATG	5 cut(s)	327, 433, 1240, 1247, 1656
BsrFI	RCCGGY	1 cut(s)	589
BsrGI	TGTACA	1 cut(s)	1912
BsrI	ACTGG	3 cut(s)	208, 1141, 1571
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	7 cut(s)	641, 1533, 1753, 1841, 1978, 2020, 2035
BssMI	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
BssNAI	GTATAC	3 cut(s)	138, 992, 1861
BssT1I	CCWWGG	2 cut(s)	641, 1841
Bst1107I	GTATAC	3 cut(s)	138, 992, 1861
Bst2UI	CCWGG	4 cut(s)	651, 1350, 1625, 2022
Bst4CI	ACNGT	8 cut(s)	127, 673, 694, 767, 1117, 1168, 1447, 2005
Bst6I	CTCTTC	2 cut(s)	242, 1547
BstAPI	GCANNNNNTGC	3 cut(s)	53, 97, 1585
BstAUI	TGTACA	1 cut(s)	1912
BstBAI	YACGTR	2 cut(s)	287, 524
BstC8I	GCNNGC	5 cut(s)	246, 262, 339, 1254, 1346
BstDEI	CTNAG	7 cut(s)	159, 1229, 1303, 1593, 1773, 1883, 1961
BstDSI	CCRYGG	2 cut(s)	641, 1753
BstF5I	GGATG	4 cut(s)	212, 224, 1633, 1693
BstFNI	CGCG	1 cut(s)	1755
BstKTI	GATC	7 cut(s)	497, 763, 1198, 1524, 1557, 1684, 1764
BstMAI	GTCTC	2 cut(s)	651, 1436
BstMBI	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 97, 241, 331, 964, 1253, 1331, 1585
BstNI	CCWGG	4 cut(s)	651, 1350, 1625, 2022
BstNSI	RCATGY	2 cut(s)	1033, 1672
BstSCI	CCNGG	5 cut(s)	649, 1348, 1532, 1623, 2020
BstSFI	CTRYAG	2 cut(s)	30, 1632
BstUI	CGCG	1 cut(s)	1755
BstV1I	GCAGC	4 cut(s)	103, 346, 1258, 1618
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	1521, 1761
BstXI	CCANNNNNNTGG	1 cut(s)	642
BstYI	RGATCY	2 cut(s)	1521, 1761
BstZ17I	GTATAC	3 cut(s)	138, 992, 1861
BsuRI	GGCC	3 cut(s)	248, 341, 459
BtgI	CCRYGG	2 cut(s)	641, 1753
BtsCI	GGATG	4 cut(s)	212, 224, 1633, 1693
BtsI	GCAGTG	1 cut(s)	1386
BtsIMutI	CAGTG	4 cut(s)	772, 1386, 1578, 2010
Cac8I	GCNNGC	5 cut(s)	246, 262, 339, 1254, 1346
CaiI	CAGNNNCTG	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	2 cut(s)	163, 2024
Cfr42I	CCGCGG	1 cut(s)	1756
Csp6I	GTAC	4 cut(s)	35, 371, 1134, 1913
CspAI	ACCGGT	1 cut(s)	589
CviAII	CATG	8 cut(s)	642, 1030, 1427, 1518, 1558, 1669, 1694, 1985
CviQI	GTAC	4 cut(s)	35, 371, 1134, 1913
DdeI	CTNAG	7 cut(s)	159, 1229, 1303, 1593, 1773, 1883, 1961
DpnI	GATC	7 cut(s)	496, 762, 1197, 1523, 1556, 1683, 1763
DpnII	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
DraI	TTTAAA	3 cut(s)	1456, 1603, 1875
DrdI	GACNNNNNNGTC	2 cut(s)	577, 630
DriI	GACNNNNNGTC	1 cut(s)	2030
DseDI	GACNNNNNNGTC	2 cut(s)	577, 630
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	242, 1547
Eam1105I	GACNNNNNGTC	1 cut(s)	2030
EarI	CTCTTC	2 cut(s)	242, 1547
EciI	GGCGGA	1 cut(s)	1754
Eco130I	CCWWGG	2 cut(s)	641, 1841
Eco24I	GRGCYC	1 cut(s)	1612
Eco31I	GGTCTC	1 cut(s)	651
Eco47I	GGWCC	2 cut(s)	163, 2024
Eco57I	CTGAAG	1 cut(s)	1226
Eco88I	CYCGRG	1 cut(s)	1979
EcoRII	CCWGG	4 cut(s)	649, 1348, 1623, 2020
EcoT14I	CCWWGG	2 cut(s)	641, 1841
EcoT22I	ATGCAT	1 cut(s)	921
EcoT38I	GRGCYC	1 cut(s)	1612
ErhI	CCWWGG	2 cut(s)	641, 1841
FaeI	CATG	8 cut(s)	645, 1033, 1430, 1521, 1561, 1672, 1697, 1988
FaqI	GGGAC	5 cut(s)	192, 533, 587, 1104, 1553
FatI	CATG	8 cut(s)	641, 1029, 1426, 1517, 1557, 1668, 1693, 1984
FauI	CCCGC	1 cut(s)	1748
FbaI	TGATCA	2 cut(s)	760, 1554
FblI	GTMKAC	4 cut(s)	137, 991, 1068, 1860
Fnu4HI	GCNGC	7 cut(s)	92, 335, 1272, 1577, 1632, 1753, 1768
FokI	GGATG	4 cut(s)	211, 219, 1640, 1700
FriOI	GRGCYC	1 cut(s)	1612
Fsp4HI	GCNGC	7 cut(s)	92, 335, 1272, 1577, 1632, 1753, 1768
FspBI	CTAG	6 cut(s)	107, 492, 1064, 1565, 1814, 2074
GluI	GCNGC	7 cut(s)	92, 335, 1272, 1577, 1632, 1753, 1768
GsaI	CCCAGC	2 cut(s)	1944, 2019
GsuI	CTGGAG	1 cut(s)	1436
HaeIII	GGCC	3 cut(s)	248, 341, 459
HapII	CCGG	2 cut(s)	590, 1533
Hin1II	CATG	8 cut(s)	645, 1033, 1430, 1521, 1561, 1672, 1697, 1988
HincII	GTYRAC	1 cut(s)	1848
HindII	GTYRAC	1 cut(s)	1848
HindIII	AAGCTT	2 cut(s)	965, 1342
HinfI	GANTC	9 cut(s)	40, 546, 612, 1012, 1057, 1109, 1777, 1995, 2011
HpaI	GTTAAC	1 cut(s)	1848
HpaII	CCGG	2 cut(s)	590, 1533
HphI	GGTGA	3 cut(s)	308, 1465, 1604
Hpy166II	GTNNAC	7 cut(s)	138, 222, 282, 992, 1069, 1848, 1861
Hpy188I	TCNGA	4 cut(s)	396, 848, 1776, 2039
Hpy188III	TCNNGA	5 cut(s)	1439, 1483, 1619, 1685, 1922
Hpy8I	GTNNAC	7 cut(s)	138, 222, 282, 992, 1069, 1848, 1861
HpyAV	CCTTC	7 cut(s)	420, 470, 787, 845, 1480, 1625, 1811
HpyCH4III	ACNGT	8 cut(s)	127, 673, 694, 767, 1117, 1168, 1447, 2005
HpyCH4IV	ACGT	3 cut(s)	286, 523, 1075
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 97, 241, 331, 964, 1253, 1331, 1585
HpyF3I	CTNAG	7 cut(s)	159, 1229, 1303, 1593, 1773, 1883, 1961
HpySE526I	ACGT	3 cut(s)	286, 523, 1075
Hsp92II	CATG	8 cut(s)	645, 1033, 1430, 1521, 1561, 1672, 1697, 1988
Ksp22I	TGATCA	2 cut(s)	760, 1554
KspAI	GTTAAC	1 cut(s)	1848
KspI	CCGCGG	1 cut(s)	1756
Kzo9I	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
LguI	GCTCTTC	2 cut(s)	242, 1547
LmnI	GCTCC	3 cut(s)	716, 1396, 1593
Lsp1109I	GCAGC	4 cut(s)	103, 346, 1258, 1618
LweI	GCATC	4 cut(s)	56, 782, 1138, 1618
MaeI	CTAG	6 cut(s)	107, 492, 1064, 1565, 1814, 2074
MaeII	ACGT	3 cut(s)	286, 523, 1075
MaeIII	GTNAC	2 cut(s)	973, 1919
MalI	GATC	7 cut(s)	496, 762, 1197, 1523, 1556, 1683, 1763
MboI	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
MboII	GAAGA	7 cut(s)	229, 302, 1300, 1413, 1534, 1691, 1800
MfeI	CAATTG	3 cut(s)	1335, 1461, 1527
MflI	RGATCY	2 cut(s)	1521, 1761
MhlI	GDGCHC	3 cut(s)	750, 1542, 1612
MlsI	TGGCCA	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	6 cut(s)	34, 555, 1021, 1051, 1786, 2005
MmeI	TCCRAC	2 cut(s)	64, 694
Mox20I	TGGCCA	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	6 cut(s)	594, 801, 1455, 1602, 1847, 1874
MslI	CAYNNNNRTG	1 cut(s)	1953
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	1755
MspI	CCGG	2 cut(s)	590, 1533
MspR9I	CCNGG	5 cut(s)	651, 1350, 1534, 1625, 2022
MunI	CAATTG	3 cut(s)	1335, 1461, 1527
Mva1269I	GAATGC	1 cut(s)	879
MvaI	CCWGG	4 cut(s)	651, 1350, 1625, 2022
MvnI	CGCG	1 cut(s)	1755
MwoI	GCNNNNNNNGC	8 cut(s)	53, 97, 241, 331, 964, 1253, 1331, 1585
NciI	CCSGG	1 cut(s)	1534
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
NlaIII	CATG	8 cut(s)	645, 1033, 1430, 1521, 1561, 1672, 1697, 1988
NlaIV	GGNNCC	2 cut(s)	1432, 1523
NmuCI	GTSAC	1 cut(s)	1919
NsiI	ATGCAT	1 cut(s)	921
NspI	RCATGY	2 cut(s)	1033, 1672
PciI	ACATGT	1 cut(s)	1668
PciSI	GCTCTTC	2 cut(s)	242, 1547
PctI	GAATGC	1 cut(s)	879
PfeI	GAWTC	3 cut(s)	612, 1109, 1995
PinAI	ACCGGT	1 cut(s)	589
PkrI	GCNGC	7 cut(s)	93, 336, 1273, 1578, 1633, 1754, 1769
PleI	GAGTC	6 cut(s)	34, 554, 1020, 1051, 1785, 2005
PpsI	GAGTC	6 cut(s)	34, 554, 1020, 1051, 1785, 2005
Ppu21I	YACGTR	2 cut(s)	287, 524
PscI	ACATGT	1 cut(s)	1668
Psp6I	CCWGG	4 cut(s)	649, 1348, 1623, 2020
PspFI	CCCAGC	2 cut(s)	1940, 2015
PspGI	CCWGG	4 cut(s)	649, 1348, 1623, 2020
PspN4I	GGNNCC	2 cut(s)	1432, 1523
PspPI	GGNCC	2 cut(s)	163, 2024
PstI	CTGCAG	2 cut(s)	34, 1636
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	1521, 1761
RsaI	GTAC	4 cut(s)	36, 372, 1135, 1914
RsaNI	GTAC	4 cut(s)	35, 371, 1134, 1913
RseI	CAYNNNNRTG	1 cut(s)	1953
SacII	CCGCGG	1 cut(s)	1756
SapI	GCTCTTC	2 cut(s)	242, 1547
SaqAI	TTAA	6 cut(s)	594, 801, 1455, 1602, 1847, 1874
SatI	GCNGC	7 cut(s)	92, 335, 1272, 1577, 1632, 1753, 1768
Sau3AI	GATC	7 cut(s)	494, 760, 1195, 1521, 1554, 1681, 1761
Sau96I	GGNCC	2 cut(s)	163, 2024
ScaI	AGTACT	1 cut(s)	1135
SchI	GAGTC	6 cut(s)	34, 555, 1021, 1051, 1786, 2005
ScrFI	CCNGG	5 cut(s)	651, 1350, 1534, 1625, 2022
SduI	GDGCHC	3 cut(s)	750, 1542, 1612
SfaNI	GCATC	4 cut(s)	56, 782, 1138, 1618
SfcI	CTRYAG	2 cut(s)	30, 1632
Sfr303I	CCGCGG	1 cut(s)	1756
SgrBI	CCGCGG	1 cut(s)	1756
SinI	GGWCC	2 cut(s)	163, 2024
SmiMI	CAYNNNNRTG	1 cut(s)	1953
SmlI	CTYRAG	2 cut(s)	1129, 1439
SmoI	CTYRAG	2 cut(s)	1129, 1439
SpeI	ACTAGT	1 cut(s)	1063
SsiI	CCGC	7 cut(s)	536, 958, 1576, 1753, 1755, 1765, 1768
SspI	AATATT	1 cut(s)	1374
SspMI	CTAG	6 cut(s)	107, 492, 1064, 1565, 1814, 2074
StyD4I	CCNGG	5 cut(s)	649, 1348, 1532, 1623, 2020
StyI	CCWWGG	2 cut(s)	641, 1841
TaaI	ACNGT	8 cut(s)	127, 673, 694, 767, 1117, 1168, 1447, 2005
TaiI	ACGT	3 cut(s)	289, 526, 1078
TaqI	TCGA	2 cut(s)	1399, 1998
TaqII	GACCGA	1 cut(s)	180
TatI	WGTACW	3 cut(s)	34, 1133, 1912
TauI	GCSGC	3 cut(s)	1579, 1755, 1770
TfiI	GAWTC	3 cut(s)	612, 1109, 1995
Tru1I	TTAA	6 cut(s)	594, 801, 1455, 1602, 1847, 1874
Tru9I	TTAA	6 cut(s)	594, 801, 1455, 1602, 1847, 1874
TscAI	CASTG	4 cut(s)	772, 1393, 1578, 2010
TseFI	GTSAC	1 cut(s)	1919
TseI	GCWGC	4 cut(s)	91, 334, 1271, 1631
Tsp45I	GTSAC	1 cut(s)	1919
TspDTI	ATGAA	7 cut(s)	810, 1062, 1176, 1682, 1749, 1893, 1971
TspRI	CASTG	4 cut(s)	772, 1393, 1578, 2010
VpaK11BI	GGWCC	2 cut(s)	163, 2024
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	2 cut(s)	1033, 1672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmiI	GTMKAC	4 cut(s)	137, 991, 1068, 1860
XspI	CTAG	6 cut(s)	107, 492, 1064, 1565, 1814, 2074
ZrmI	AGTACT	1 cut(s)	1135
Zsp2I	ATGCAT	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.