pycom15g02210

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008478
Physical Location & Seq
Reverse (-)
1313983 .. 1315044
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
ATGGATTTTAGAGCTCAAGATAACGAAATGAGGACGTCAGGCTCGCTAAGCTATGCTCATTTAAGTACCAAAGAGTCGTCGCCGTCGTCAGCGGCAGCAGCACCAGCAGCAGATCACCAGCAAAAGAGAAGACTTGGGATTCACAATGGCACTGGAAGTTACGGTTCTGCCACTGCTCCTCATCACCAGCACCAAACCCTAGACAACCACAACCCAGCTGTTCTCCCGTTGCAGCCGTTGATCCGGGACCCAGATCCGGATCGTGCCCTATCCGGGACCCCGGTGGCCCCACATGGAGCCGGACTCAGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGACCCAAGTCTTTGGGAAAAGTTGTTATGTATAGAGAGTGCCTCAAGAACCACGCGGCGAACATTGGTGGTAATGTGTTCGACGGCTGCGGAGAGTTCATGCCGAGCGGCGAAGAGGGGACGCTGGAGGCTTTGAAATGCGCGGCGTGCGACTGCCACCGCAACTTCCACCGCAAGGAGGTGGACGGGGAGACGGCTGCTTTCAGTCCCGCGTCGAGAAGGTCGAGCATAATGCTGACTCCACTTCAACTTCCGCCCCCACTGCCTTCTTCCTCGGCTCTGCACCATCATCATCACCACCACCAGAAGTACTCGATGCCCCAGATTGTCCAGCCGGTGAACGTGGCGTTCGGGAGCGGCGGAGGAGGGACGGAGAGTTCGAGCGAGGATCTGAATGCTTTTGAGGGTGGAGCGGTGCCGCCGTTTGCTTTGTCGAAGAAGCGGTTTCGAACAAAGTTTACGGTGGAGCAGAAGGAGAGGATGATGGAGTTTGCGGAGAGGGTTGAGTGGAGAATTCAGAAGCAGGATGAGGAGGAGGTGGAGAGGTTTTGTGCGGAGGTGGGAGTGAAGAGGCAGGTGCTTAGGGTTTGGATGCACAACAACAAAAACACCATTAAGAAGCAGGGTGACGTCACTGCTACTACTAATGCCATTGCTACAGGTCTGTCTTTTGACAATGTGGAGGGAGAAGGTGGGGAGGGAGCGGCAGCAGCTGAAGATTAA

Protein Analysis

354

Amino Acids

37.72

Weight (kDa)

6.44

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 122 - 174 1.2e-30 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 904
AatII GACGTC 2 cut(s) 38, 972
Acc36I ACCTGC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 754
AccBSI CCGCTC 4 cut(s) 447, 696, 752, 1043
AccII CGCG 3 cut(s) 395, 482, 551
AccIII TCCGGA 1 cut(s) 256
AclWI GGATC 4 cut(s) 235, 248, 267, 735
AcsI RAATTY 1 cut(s) 852
AcyI GRCGYC 2 cut(s) 35, 969
AfaI GTAC 2 cut(s) 67, 650
AfiI CCNNNNNNNGG 4 cut(s) 256, 273, 514, 517
AgsI TTSAA 2 cut(s) 475, 587
AloI GAACNNNNNNTCC 2 cut(s) 700, 732
AluBI AGCT 4 cut(s) 14, 51, 218, 1052
AluI AGCT 4 cut(s) 14, 51, 218, 1052
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 4 cut(s) 235, 248, 267, 735
AlwNI CAGNNNCTG 1 cut(s) 1052
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 8 cut(s) 95, 98, 107, 232, 426, 536, 1046, 1049
ApoI RAATTY 1 cut(s) 852
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
AspLEI GCGC 1 cut(s) 482
AspS9I GGNCC 4 cut(s) 247, 276, 286, 341
AsuC2I CCSGG 3 cut(s) 245, 274, 281
AsuHPI GGTGA 5 cut(s) 107, 176, 626, 688, 977
AsuII TTCGAA 1 cut(s) 787
AvaII GGWCC 3 cut(s) 247, 276, 341
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 7 cut(s) 107, 110, 119, 244, 413, 523, 1058
BccI CCATC 2 cut(s) 633, 817
BceAI ACGGC 5 cut(s) 67, 220, 439, 549, 745
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BcnI CCSGG 3 cut(s) 245, 274, 281
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 996
BfuAI ACCTGC 1 cut(s) 904
BlpI GCTNAGC 1 cut(s) 47
BmcAI AGTACT 1 cut(s) 650
Bme1390I CCNGG 3 cut(s) 245, 274, 281
Bme18I GGWCC 3 cut(s) 247, 276, 341
BmgT120I GGNCC 4 cut(s) 247, 276, 286, 341
BmiI GGNNCC 8 cut(s) 248, 249, 277, 278, 288, 298, 343, 756
BmrFI CCNGG 3 cut(s) 245, 274, 281
BmsI GCATC 2 cut(s) 645, 921
BoxI GACNNNNGTC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 136
BplI GAGNNNNNCTC 4 cut(s) 288, 320, 366, 398
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 920
Bpu1102I GCTNAGC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 787
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 3 cut(s) 245, 274, 281
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 2 cut(s) 35, 969
BsaJI CCNNGG 2 cut(s) 279, 612
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 273, 514, 517
Bse118I RCCGGY 1 cut(s) 673
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 279, 612
BseGI GGATG 3 cut(s) 825, 871, 936
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 4 cut(s) 256, 273, 514, 517
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 4 cut(s) 168, 717, 884, 887
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 7 cut(s) 107, 110, 119, 244, 413, 523, 1058
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 605
Bsh1236I CGCG 3 cut(s) 395, 482, 551
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 754
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 6 cut(s) 244, 257, 273, 281, 300, 674
BslFI GGGAC 5 cut(s) 260, 289, 472, 531, 721
BslI CCNNNNNNNGG 4 cut(s) 256, 273, 514, 517
BsmAI GTCTC 1 cut(s) 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 5 cut(s) 260, 289, 472, 531, 721
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 787
Bsp1286I GDGCHC 2 cut(s) 16, 268
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 5 cut(s) 112, 240, 253, 259, 727
Bsp1720I GCTNAGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 3 cut(s) 395, 482, 551
BspLI GGNNCC 8 cut(s) 248, 249, 277, 278, 288, 298, 343, 756
BspMI ACCTGC 1 cut(s) 904
BspPI GGATC 4 cut(s) 235, 248, 267, 735
BspT104I TTCGAA 1 cut(s) 787
BspT107I GGYRCC 1 cut(s) 754
BsrBI CCGCTC 4 cut(s) 447, 696, 752, 1043
BsrDI GCAATG 1 cut(s) 990
BsrFI RCCGGY 1 cut(s) 673
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 673
BssECI CCNNGG 2 cut(s) 279, 612
BssMI GATC 5 cut(s) 112, 240, 253, 259, 727
BssNI GRCGYC 2 cut(s) 35, 969
Bst4CI ACNGT 2 cut(s) 164, 802
Bst6I CTCTTC 2 cut(s) 447, 902
BstACI GRCGYC 2 cut(s) 35, 969
BstBI TTCGAA 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 44, 487
BstDEI CTNAG 3 cut(s) 47, 305, 920
BstF5I GGATG 3 cut(s) 825, 871, 936
BstFNI CGCG 3 cut(s) 395, 482, 551
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 5 cut(s) 115, 243, 256, 262, 730
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 5 cut(s) 112, 240, 253, 259, 727
BstMWI GCNNNNNNNGC 7 cut(s) 48, 98, 104, 107, 486, 601, 1049
BstPAI GACNNNNGTC 1 cut(s) 346
BstSCI CCNGG 3 cut(s) 243, 272, 279
BstSFI CTRYAG 1 cut(s) 996
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 3 cut(s) 395, 482, 551
BstV1I GCAGC 7 cut(s) 107, 110, 119, 244, 413, 523, 1058
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 253, 727
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 2 cut(s) 253, 727
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 3 cut(s) 825, 871, 936
BtsI GCAGTG 4 cut(s) 171, 319, 599, 972
BtsIMutI CAGTG 6 cut(s) 150, 171, 313, 319, 599, 972
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 2 cut(s) 44, 487
CaiI CAGNNNCTG 1 cut(s) 1052
CfoI GCGC 1 cut(s) 482
Cfr10I RCCGGY 1 cut(s) 673
Cfr13I GGNCC 4 cut(s) 247, 276, 286, 341
CseI GACGC 2 cut(s) 469, 540
Csp6I GTAC 2 cut(s) 66, 649
CviAII CATG 2 cut(s) 293, 439
CviQI GTAC 2 cut(s) 66, 649
DdeI CTNAG 3 cut(s) 47, 305, 920
DpnI GATC 5 cut(s) 114, 242, 255, 261, 729
DpnII GATC 5 cut(s) 112, 240, 253, 259, 727
Eam1104I CTCTTC 2 cut(s) 447, 902
EarI CTCTTC 2 cut(s) 447, 902
EciI GGCGGA 2 cut(s) 582, 714
Ecl136II GAGCTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 3 cut(s) 247, 276, 341
Eco53kI GAGCTC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 14
EcoO109I RGGNCCY 2 cut(s) 247, 276
EcoRI GAATTC 1 cut(s) 852
EcoT38I GRGCYC 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 2 cut(s) 296, 442
FaiI YATR 6 cut(s) 54, 294, 368, 372, 440, 569
FaqI GGGAC 5 cut(s) 260, 289, 472, 531, 721
FatI CATG 2 cut(s) 292, 438
FauI CCCGC 1 cut(s) 556
FokI GGATG 3 cut(s) 832, 878, 943
FriOI GRGCYC 1 cut(s) 16
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 481
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 1 cut(s) 287
HapII CCGG 6 cut(s) 244, 257, 273, 281, 300, 674
HgaI GACGC 2 cut(s) 469, 540
HhaI GCGC 1 cut(s) 482
Hin1I GRCGYC 2 cut(s) 35, 969
Hin1II CATG 2 cut(s) 296, 442
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HinfI GANTC 4 cut(s) 74, 139, 303, 577
HpaII CCGG 6 cut(s) 244, 257, 273, 281, 300, 674
HphI GGTGA 5 cut(s) 107, 176, 626, 688, 977
Hpy166II GTNNAC 4 cut(s) 341, 523, 679, 798
Hpy188I TCNGA 2 cut(s) 732, 858
Hpy188III TCNNGA 5 cut(s) 17, 257, 385, 555, 691
Hpy8I GTNNAC 4 cut(s) 341, 523, 679, 798
Hpy99I CGWCG 4 cut(s) 82, 88, 425, 556
HpyAV CCTTC 4 cut(s) 552, 615, 805, 1022
HpyCH4III ACNGT 2 cut(s) 164, 802
HpyCH4IV ACGT 3 cut(s) 35, 681, 969
HpyCH4V TGCA 3 cut(s) 232, 622, 934
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 98, 104, 107, 486, 601, 1049
HpyF3I CTNAG 3 cut(s) 47, 305, 920
HpySE526I ACGT 3 cut(s) 35, 681, 969
Hsp92I GRCGYC 2 cut(s) 35, 969
Hsp92II CATG 2 cut(s) 296, 442
HspAI GCGC 1 cut(s) 480
KflI GGGWCCC 2 cut(s) 247, 276
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 5 cut(s) 112, 240, 253, 259, 727
LmnI GCTCC 6 cut(s) 181, 296, 693, 749, 805, 1040
Lsp1109I GCAGC 7 cut(s) 107, 110, 119, 244, 413, 523, 1058
LweI GCATC 2 cut(s) 645, 921
MaeI CTAG 1 cut(s) 200
MaeII ACGT 3 cut(s) 35, 681, 969
MaeIII GTNAC 3 cut(s) 158, 965, 970
MalI GATC 5 cut(s) 114, 242, 255, 261, 729
MbiI CCGCTC 4 cut(s) 447, 696, 752, 1043
MboI GATC 5 cut(s) 112, 240, 253, 259, 727
MboII GAAGA 5 cut(s) 141, 464, 600, 787, 919
MflI RGATCY 2 cut(s) 253, 727
MhlI GDGCHC 2 cut(s) 16, 268
MluCI AATT 1 cut(s) 852
MlyI GAGTC 3 cut(s) 83, 297, 571
MroI TCCGGA 1 cut(s) 256
MseI TTAA 3 cut(s) 62, 954, 1060
MspA1I CMGCKG 3 cut(s) 92, 218, 1052
MspI CCGG 6 cut(s) 244, 257, 273, 281, 300, 674
MspR9I CCNGG 3 cut(s) 245, 274, 281
Mva1269I GAATGC 1 cut(s) 739
MvnI CGCG 3 cut(s) 395, 482, 551
MwoI GCNNNNNNNGC 7 cut(s) 48, 98, 104, 107, 486, 601, 1049
NciI CCSGG 3 cut(s) 245, 274, 281
NdeII GATC 5 cut(s) 112, 240, 253, 259, 727
NlaIII CATG 2 cut(s) 296, 442
NlaIV GGNNCC 8 cut(s) 248, 249, 277, 278, 288, 298, 343, 756
NmeAIII GCCGAG 2 cut(s) 468, 593
NmuCI GTSAC 2 cut(s) 965, 970
NspV TTCGAA 1 cut(s) 787
PaqCI CACCTGC 1 cut(s) 904
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 560, 716
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 1 cut(s) 139
PfoI TCCNGGA 2 cut(s) 243, 272
PleI GAGTC 3 cut(s) 82, 297, 571
PpsI GAGTC 3 cut(s) 82, 297, 571
PpuMI RGGWCCY 2 cut(s) 247, 276
PshAI GACNNNNGTC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 16
Psp5II RGGWCCY 2 cut(s) 247, 276
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 8 cut(s) 248, 249, 277, 278, 288, 298, 343, 756
PspPI GGNCC 4 cut(s) 247, 276, 286, 341
PspPPI RGGWCCY 2 cut(s) 247, 276
PsrI GAACNNNNNNTAC 2 cut(s) 781, 813
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 2 cut(s) 253, 727
PvuII CAGCTG 2 cut(s) 218, 1052
RsaI GTAC 2 cut(s) 67, 650
RsaNI GTAC 2 cut(s) 66, 649
SacI GAGCTC 1 cut(s) 16
SaqAI TTAA 3 cut(s) 62, 954, 1060
Sau3AI GATC 5 cut(s) 112, 240, 253, 259, 727
Sau96I GGNCC 4 cut(s) 247, 276, 286, 341
ScaI AGTACT 1 cut(s) 650
SchI GAGTC 3 cut(s) 83, 297, 571
ScrFI CCNGG 3 cut(s) 245, 274, 281
SduI GDGCHC 2 cut(s) 16, 268
SfaNI GCATC 2 cut(s) 645, 921
SfcI CTRYAG 1 cut(s) 996
SfuI TTCGAA 1 cut(s) 787
SinI GGWCC 3 cut(s) 247, 276, 341
SmlI CTYRAG 2 cut(s) 15, 383
SmoI CTYRAG 2 cut(s) 15, 383
Sse9I AATT 1 cut(s) 852
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 243, 272, 279
TaaI ACNGT 2 cut(s) 164, 802
TaiI ACGT 3 cut(s) 38, 684, 972
TaqI TCGA 7 cut(s) 420, 554, 563, 653, 719, 773, 787
TasI AATT 1 cut(s) 852
TatI WGTACW 1 cut(s) 648
TauI GCSGC 7 cut(s) 95, 398, 450, 485, 699, 760, 1046
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 3 cut(s) 62, 954, 1060
Tru9I TTAA 3 cut(s) 62, 954, 1060
TscAI CASTG 6 cut(s) 157, 178, 313, 319, 606, 979
TseFI GTSAC 2 cut(s) 965, 970
TseI GCWGC 8 cut(s) 95, 98, 107, 232, 426, 536, 1046, 1049
Tsp45I GTSAC 2 cut(s) 965, 970
TspDTI ATGAA 1 cut(s) 427
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 6 cut(s) 157, 178, 313, 319, 606, 979
VpaK11BI GGWCC 3 cut(s) 247, 276, 341
XapI RAATTY 1 cut(s) 852
XspI CTAG 1 cut(s) 200
ZraI GACGTC 2 cut(s) 36, 970
ZrmI AGTACT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.