Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003639

Physical Location & Seq

Genomic Coordinates Forward (+)

2921023 .. 2921826

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTTCCAGTTAGCAGTCGAAGTTCTAAGAAAGAAGTAAACAGAGGCTCCTGGACGGCAGAGGAGGACCAAAAACTTGCTCAAGTTATAGAAATCCACGGTCCGAGGCGTTGGAAGTCCATTGCAACTAAAGCAGGTCTTAAGCGATGTGGGAAGAGCTGCAGGTTAAGATGGATGAACTATCTTAGACCTAATATTAAGAGAGGCAATATTTCAGACCAAGAAGAAGACTTAATTCTTAGGCTTCATAAGCTTCTGGGAAACAGTTTTACTTGGCTTGCTTATGAATATAGGTGGTCGTTGATTGCCGGAAGACTACCTGGTCGAACAGATAACGAGATCAAGAACTACTGGAACTCTCATTTGAGCAAAAAGATGAAGCAAAACAGAGCAGTTTCAAAGACAGTGCAAGGGTCCACAGAGCAAAAGAATATCAAAGCAATGGACGTGAATGCTTTAACAATTGAAAGAGAAGACGCCTTCAAACGTGAGGAGAACTTCAACTTCGGTTTCAATGGCGACGAATTCTTCAACTGCTCGAGCAGCGAACAAGGGCCTCTGAATTTGGAGTGGATGAATAGATTCCTTGAAATGGATGAGAGTTGGTTTACTTTGCATGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

209

Amino Acids

24.39

Weight (kDa)

9.36

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	5.3e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 122	2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 129	3.4e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66380
fragaria_vesca	FvH4_2g31020 FvH4_2g31020 FvH4_5g19400 FvH4_5g19400 FvH4_5g19400
malus_domestica	MD04G1060200.v1.1 MD06G1053100.v1.1 MD15G1050300.v1.1
prunus_persica	Prupe.1G404700_v2.0.a1 Prupe.1G404800_v2.0.a1 Prupe.5G065500_v2.0.a1
pyrus_communis	pycom04g05380 pycom06g04480 pycom15g04870
rosa_chinensis	RchiOBHm_Chr6g0311771 RchiOBHm_Chr7g0203911
rosa_laevigata	RLG00000003500 RLG00000010375
rosa_multiflora	Rmu_sc0002888.1_g000040 Rmu_sc0014006.1_g000003 Rmu_sc0015961.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253470 Rroxscaffold_7G00157320
rosa_rugosa	Rorug07G0079200.1 Rorug07G0079300
rosa_samantha	Rh6AG506900 Rh6BG517700 Rh6CG523300 Rh6DG509200 Rh7AG209200 Rh7CG221600 Rh7DG216200
rosa_wichuraiana	Rw6G044100 Rw7G018230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	321
Acc36I	ACCTGC	2 cut(s)	125, 153
AcsI	RAATTY	2 cut(s)	524, 562
AcyI	GRCGYC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	592
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	7 cut(s)	399, 467, 484, 502, 514, 532, 590
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	50, 319
AluBI	AGCT	2 cut(s)	159, 253
AluI	AGCT	2 cut(s)	159, 253
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	159, 543
ApoI	RAATTY	2 cut(s)	524, 562
Asp700I	GAANNNNTTC	1 cut(s)	581
AspS9I	GGNCC	4 cut(s)	67, 101, 414, 554
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	3 cut(s)	67, 101, 414
BbsI	GAAGAC	3 cut(s)	234, 319, 480
BbvI	GCAGC	2 cut(s)	146, 555
BccI	CCATC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	52, 321
BfmI	CTRYAG	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	2 cut(s)	125, 153
BisI	GCNGC	2 cut(s)	160, 544
BlsI	GCNGC	2 cut(s)	161, 545
Bme1390I	CCNGG	2 cut(s)	52, 321
Bme18I	GGWCC	3 cut(s)	67, 101, 414
BmeT110I	CYCGRG	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	4 cut(s)	67, 101, 414, 554
BmiI	GGNNCC	3 cut(s)	6, 49, 415
BmrFI	CCNGG	2 cut(s)	52, 321
BpiI	GAAGAC	3 cut(s)	234, 319, 480
BpuEI	CTTGAG	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	97, 104
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse1I	ACTGG	2 cut(s)	8, 356
Bse3DI	GCAATG	2 cut(s)	120, 447
BseBI	CCWGG	2 cut(s)	52, 321
BseDI	CCNNGG	2 cut(s)	97, 104
BseGI	GGATG	3 cut(s)	180, 579, 601
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMI	GCAATG	2 cut(s)	120, 447
BseNI	ACTGG	2 cut(s)	8, 356
BseRI	GAGGAG	2 cut(s)	77, 506
BseXI	GCAGC	2 cut(s)	146, 555
BshFI	GGCC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	556
BsoBI	CYCGRG	1 cut(s)	538
Bsp143I	GATC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	6, 49, 415
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	2 cut(s)	125, 153
BspQI	GCTCTTC	1 cut(s)	149
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	120, 447
BsrI	ACTGG	2 cut(s)	8, 356
BssECI	CCNNGG	2 cut(s)	97, 104
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	52, 321
Bst4CI	ACNGT	3 cut(s)	101, 266, 406
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	477
BstAFI	CTTAAG	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	27, 185, 239
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	180, 579, 601
BstKTI	GATC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 250, 543
BstNI	CCWGG	2 cut(s)	52, 321
BstSCI	CCNGG	2 cut(s)	50, 319
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	146, 555
BstV2I	GAAGAC	3 cut(s)	234, 319, 480
BsuRI	GGCC	1 cut(s)	556
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	180, 579, 601
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	2 cut(s)	125, 153
Cac8I	GCNNGC	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	67, 101, 414, 554
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	485
CsiI	ACCWGGT	1 cut(s)	319
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	1 cut(s)	617
CviJI	RGCY	6 cut(s)	48, 159, 244, 253, 277, 556
CviKI_1	RGCY	6 cut(s)	48, 159, 244, 253, 277, 556
DdeI	CTNAG	3 cut(s)	27, 185, 239
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco47I	GGWCC	3 cut(s)	67, 101, 414
Eco88I	CYCGRG	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	50, 319
FaeI	CATG	1 cut(s)	620
FaiI	YATR	5 cut(s)	89, 249, 285, 291, 618
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	616
Fnu4HI	GCNGC	2 cut(s)	160, 544
FokI	GGATG	3 cut(s)	187, 586, 608
Fsp4HI	GCNGC	2 cut(s)	160, 544
GluI	GCNGC	2 cut(s)	160, 544
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	1 cut(s)	620
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	1 cut(s)	582
HpaII	CCGG	1 cut(s)	309
Hpy166II	GTNNAC	3 cut(s)	40, 417, 609
Hpy188I	TCNGA	3 cut(s)	105, 217, 561
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	3 cut(s)	40, 417, 609
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	3 cut(s)	101, 266, 406
HpyCH4IV	ACGT	2 cut(s)	447, 487
HpyCH4V	TGCA	4 cut(s)	125, 162, 409, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 250, 543
HpyF3I	CTNAG	3 cut(s)	27, 185, 239
HpySE526I	ACGT	2 cut(s)	447, 487
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	1 cut(s)	620
Kzo9I	GATC	1 cut(s)	339
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	146, 555
MabI	ACCWGGT	1 cut(s)	319
MaeII	ACGT	2 cut(s)	447, 487
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	6 cut(s)	166, 236, 239, 324, 485, 520
MfeI	CAATTG	1 cut(s)	462
MluCI	AATT	4 cut(s)	234, 462, 524, 562
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	38, 55, 58, 99, 197, 484, 567
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	5 cut(s)	141, 167, 198, 233, 458
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	52, 321
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	52, 321
MwoI	GCNNNNNNNGC	3 cut(s)	131, 250, 543
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	1 cut(s)	620
NlaIV	GGNNCC	3 cut(s)	6, 49, 415
PaeR7I	CTCGAG	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	1 cut(s)	582
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	161, 545
Psp6I	CCWGG	2 cut(s)	50, 319
PspGI	CCWGG	2 cut(s)	50, 319
PspN4I	GGNNCC	3 cut(s)	6, 49, 415
PspPI	GGNCC	4 cut(s)	67, 101, 414, 554
PspXI	VCTCGAGB	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	164
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	141, 167, 198, 233, 458
SatI	GCNGC	2 cut(s)	160, 544
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	4 cut(s)	67, 101, 414, 554
ScrFI	CCNGG	2 cut(s)	52, 321
SetI	ASST	9 cut(s)	139, 161, 167, 193, 255, 296, 322, 450, 490
SexAI	ACCWGGT	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	160
Sfr274I	CTCGAG	1 cut(s)	538
SinI	GGWCC	3 cut(s)	67, 101, 414
SlaI	CTCGAG	1 cut(s)	538
SmlI	CTYRAG	3 cut(s)	81, 140, 538
SmoI	CTYRAG	3 cut(s)	81, 140, 538
Sse9I	AATT	4 cut(s)	234, 462, 524, 562
SspI	AATATT	2 cut(s)	196, 211
StyD4I	CCNGG	2 cut(s)	50, 319
TaaI	ACNGT	3 cut(s)	101, 266, 406
TaiI	ACGT	2 cut(s)	450, 490
TaqI	TCGA	3 cut(s)	19, 325, 539
TasI	AATT	4 cut(s)	234, 462, 524, 562
TfiI	GAWTC	1 cut(s)	582
Tru1I	TTAA	5 cut(s)	141, 167, 198, 233, 458
Tru9I	TTAA	5 cut(s)	141, 167, 198, 233, 458
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	2 cut(s)	159, 543
TspDTI	ATGAA	5 cut(s)	191, 236, 300, 392, 590
TspRI	CASTG	1 cut(s)	411
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	3 cut(s)	67, 101, 414
XapI	RAATTY	2 cut(s)	524, 562
XhoI	CTCGAG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.