pycom15g09430

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008825
Physical Location & Seq
Reverse (-)
6151632 .. 6153907
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGTATGGATGTCAGCAAAGGTGCGGGTTCACATTTACGGAAGTAAACTCTATTAGAGCAAGCGCAACCAAGGTTACAAGCTGTCACTTCTCATCAGATGGAAAGTTTCTTGCTAGTGGGGGCCATGATAAAAAGGCTGTATTGTGGTACACAGATACATTAAAGCCAAAAAGTGTGCTAGAAGAACATTCAGCTTTGATAACTGATGTTCGTTTTAGTCCGAGCATGCCACGTCTTGCAACGTCTTCATTTGACAAGACTGTCAGGGTTTGGGATGCCAACAATCCTGGTTATTCTCTCCGTACCCTTATGGGACATTCGGTCTCTGTTATGTCATTAGATTTCCACCCAAATAAAGATGACCTCATCTGTTCTTGCGACGCGGATGGTCAGATACGCTACTGGAGTATTCACAAGGGCAGCTGCTTGTGCGTGTCTAAGGGTGGTACGGCACAAATGAGATTTCAACCCCGTCTTGGAAGATTTCTTGCTGCAGCCGCAGAGAATGTTGTATCTATACTGGATGTTGAGACTCTGACTTGTCAGCATTCTTTACAGGGGCATACTAAGCCTATCCATTCTGTGTGTTGGGATCCTTCTGGCGAATTCCTTGCATCTGTCAGCGAGGACTCAGTAAGAGTTTGGGCACTTGGAGCGGGAGGCGAAGGGGAATGTGTTCATGAGTTAAGCTGCGACGGAAGTAAATTTCATTCATGCGTTTTCCATCCTACATATACTTCAATTCTGGTCATTGGCTGTTATCAGACACTGGAGTTATGGAACATGACAGAGAACAAGACAATGACTCTACCAGCACATGATGGACTCATTGCTTCTTTGGCGGCGTCAACTGTAACAGGTTTGATTGCTTCGGCTAGTCACGATAACTTTGTCAAGATCTATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

303

Amino Acids

33.0

Weight (kDa)

6.52

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Gbeta PF25391 10 - 146 5.8e-10 G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1 PF24105 12 - 95 2e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 14 - 216 1.6e-18 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 15 - 77 6e-08 CDC20/Fizzy WD40 domain
WD40 PF00400 15 - 49 1.8e-06 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 20 - 143 5.1e-27 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 20 - 137 8.9e-21 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 21 - 218 3.2e-31 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 21 - 141 6.6e-15 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 22 - 95 9.2e-11 WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd PF24782 23 - 139 4.8e-09 MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 23 - 120 2.5e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 23 - 95 2.4e-15 THOC3 beta-propeller domain
Beta-prop_EML PF23409 31 - 142 4.2e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd PF25047 52 - 144 7.4e-08 TEP-1 second beta-propeller
WD40 PF00400 55 - 92 9.1e-09 WD domain, G-beta repeat
EIF3I PF24805 60 - 151 7.6e-08 EIF3I
WD40_CDC20-Fz PF24807 60 - 215 1.1e-16 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 63 - 301 4.5e-37 THOC3 beta-propeller domain
WD40 PF00400 98 - 136 1.1e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 100 - 177 1.6e-07 WDHD1 first WD40 domain
Beta-prop_Aladin PF25460 108 - 217 2.8e-08 Aladin seven-bladed propeller
WDR55 PF24796 109 - 268 7e-06 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 123 - 220 5.3e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 124 - 261 4.3e-14 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 149 - 301 3.4e-24 WDR5 beta-propeller domain
WD40_Gbeta PF25391 151 - 301 2.4e-07 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 154 - 301 6.4e-15 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 161 - 302 1e-08 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 161 - 231 2e-10 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 163 - 300 3.7e-08 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 164 - 268 1.5e-06 CDC20/Fizzy WD40 domain
Beta-prop_EIPR1 PF23609 176 - 300 5.4e-07 EIPR1 beta-propeller
WD40 PF00400 180 - 215 1.4e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 656
AccII CGCG 1 cut(s) 383
AciI CCGC 5 cut(s) 24, 383, 498, 656, 842
AclWI GGATC 2 cut(s) 587, 600
AcsI RAATTY 2 cut(s) 605, 704
AcyI GRCGYC 1 cut(s) 845
AfaI GTAC 3 cut(s) 149, 304, 448
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 467, 741
AhdI GACNNNNNGTC 1 cut(s) 320
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 4 cut(s) 81, 194, 423, 690
AluI AGCT 4 cut(s) 81, 194, 423, 690
Alw26I GTCTC 2 cut(s) 328, 524
AlwI GGATC 2 cut(s) 587, 600
AlwNI CAGNNNCTG 1 cut(s) 769
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 5 cut(s) 420, 423, 491, 494, 690
ApoI RAATTY 2 cut(s) 605, 704
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 649
BamHI GGATCC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 237
BbvI GCAGC 5 cut(s) 410, 432, 478, 506, 677
BccI CCATC 4 cut(s) 92, 380, 732, 815
BceAI ACGGC 1 cut(s) 465
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 328, 524
BfaI CTAG 3 cut(s) 114, 179, 876
BfmI CTRYAG 1 cut(s) 492
BglII AGATCT 1 cut(s) 897
BisI GCNGC 7 cut(s) 421, 424, 492, 495, 498, 691, 843
BlsI GCNGC 7 cut(s) 422, 425, 493, 496, 499, 692, 844
Bme1390I CCNGG 1 cut(s) 288
BmeRI GACNNNNNGTC 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 122, 594
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 265, 623
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 424, 791
BsaHI GRCGYC 1 cut(s) 845
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 3 cut(s) 407, 525, 774
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 5 cut(s) 14, 280, 391, 529, 724
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 3 cut(s) 407, 525, 774
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 5 cut(s) 410, 432, 478, 506, 677
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 328, 524
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 2 cut(s) 592, 897
BspACI CCGC 5 cut(s) 24, 383, 498, 656, 842
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 644
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 122, 594
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 2 cut(s) 587, 600
BspTNI GGTCTC 1 cut(s) 328
BsrBI CCGCTC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 3 cut(s) 407, 525, 774
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 592, 897
BssNI GRCGYC 1 cut(s) 845
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 262, 853
BstACI GRCGYC 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 61, 227
BstDEI CTNAG 3 cut(s) 438, 567, 631
BstF5I GGATG 5 cut(s) 14, 280, 391, 529, 724
BstFNI CGCG 1 cut(s) 383
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 595, 900
BstMAI GTCTC 2 cut(s) 328, 524
BstMBI GATC 2 cut(s) 592, 897
BstMWI GCNNNNNNNGC 5 cut(s) 429, 497, 568, 653, 839
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 5 cut(s) 410, 432, 478, 506, 677
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 592, 897
BstYI RGATCY 2 cut(s) 592, 897
BsuRI GGCC 1 cut(s) 123
BtrI CACGTC 1 cut(s) 233
BtsCI GGATG 5 cut(s) 14, 280, 391, 529, 724
BtsIMutI CAGTG 1 cut(s) 767
Cac8I GCNNGC 2 cut(s) 61, 227
CaiI CAGNNNCTG 1 cut(s) 769
CciI TCATGA 1 cut(s) 679
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 2 cut(s) 389, 834
Csp6I GTAC 3 cut(s) 148, 303, 447
CviAII CATG 6 cut(s) 125, 226, 680, 714, 784, 818
CviQI GTAC 3 cut(s) 148, 303, 447
DdeI CTNAG 3 cut(s) 438, 567, 631
DpnI GATC 2 cut(s) 594, 899
DpnII GATC 2 cut(s) 592, 897
DrdI GACNNNNNNGTC 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 260
Eam1105I GACNNNNNGTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 6 cut(s) 128, 229, 683, 717, 787, 821
FaqI GGGAC 1 cut(s) 327
FatI CATG 6 cut(s) 124, 225, 679, 713, 783, 817
FauI CCCGC 2 cut(s) 17, 649
Fnu4HI GCNGC 7 cut(s) 421, 424, 492, 495, 498, 691, 843
FokI GGATG 5 cut(s) 21, 287, 398, 536, 711
Fsp4HI GCNGC 7 cut(s) 421, 424, 492, 495, 498, 691, 843
FspBI CTAG 3 cut(s) 114, 179, 876
GlaI GCGC 1 cut(s) 64
GluI GCNGC 7 cut(s) 421, 424, 492, 495, 498, 691, 843
GsuI CTGGAG 2 cut(s) 424, 791
HaeIII GGCC 1 cut(s) 123
HgaI GACGC 2 cut(s) 389, 834
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 845
Hin1II CATG 6 cut(s) 128, 229, 683, 717, 787, 821
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HinfI GANTC 4 cut(s) 532, 629, 805, 825
Hpy166II GTNNAC 4 cut(s) 30, 46, 150, 849
Hpy188I TCNGA 5 cut(s) 97, 222, 393, 537, 765
Hpy188III TCNNGA 3 cut(s) 680, 881, 895
Hpy8I GTNNAC 4 cut(s) 30, 46, 150, 849
Hpy99I CGWCG 2 cut(s) 383, 698
HpyAV CCTTC 2 cut(s) 606, 659
HpyCH4III ACNGT 2 cut(s) 262, 853
HpyCH4IV ACGT 2 cut(s) 232, 242
HpyCH4V TGCA 3 cut(s) 239, 494, 614
HpyF10VI GCNNNNNNNGC 5 cut(s) 429, 497, 568, 653, 839
HpyF3I CTNAG 3 cut(s) 438, 567, 631
HpySE526I ACGT 2 cut(s) 232, 242
Hsp92I GRCGYC 1 cut(s) 845
Hsp92II CATG 6 cut(s) 128, 229, 683, 717, 787, 821
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 592, 897
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 5 cut(s) 410, 432, 478, 506, 677
LweI GCATC 2 cut(s) 265, 623
MaeI CTAG 3 cut(s) 114, 179, 876
MaeII ACGT 2 cut(s) 232, 242
MaeIII GTNAC 4 cut(s) 73, 83, 853, 878
MalI GATC 2 cut(s) 594, 899
MbiI CCGCTC 1 cut(s) 656
MboI GATC 2 cut(s) 592, 897
MboII GAAGA 3 cut(s) 194, 237, 492
MflI RGATCY 2 cut(s) 592, 897
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 3 cut(s) 605, 704, 741
MlyI GAGTC 4 cut(s) 526, 623, 799, 819
MnlI CCTC 3 cut(s) 374, 619, 653
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 2 cut(s) 161, 686
MspA1I CMGCKG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 547
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 429, 497, 568, 653, 839
NdeII GATC 2 cut(s) 592, 897
NlaIII CATG 6 cut(s) 128, 229, 683, 717, 787, 821
NlaIV GGNNCC 2 cut(s) 122, 594
NmuCI GTSAC 2 cut(s) 83, 878
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PagI TCATGA 1 cut(s) 679
PctI GAATGC 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 675
PkrI GCNGC 7 cut(s) 422, 425, 493, 496, 499, 692, 844
PleI GAGTC 4 cut(s) 526, 623, 799, 819
PpsI GAGTC 4 cut(s) 526, 623, 799, 819
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 122, 594
PspPI GGNCC 1 cut(s) 121
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 2 cut(s) 592, 897
PvuII CAGCTG 1 cut(s) 423
RsaI GTAC 3 cut(s) 149, 304, 448
RsaNI GTAC 3 cut(s) 148, 303, 447
SaqAI TTAA 2 cut(s) 161, 686
SatI GCNGC 7 cut(s) 421, 424, 492, 495, 498, 691, 843
Sau3AI GATC 2 cut(s) 592, 897
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 4 cut(s) 526, 623, 799, 819
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 265, 623
SfcI CTRYAG 1 cut(s) 492
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 605, 704, 741
SsiI CCGC 5 cut(s) 24, 383, 498, 656, 842
SspMI CTAG 3 cut(s) 114, 179, 876
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 262, 853
TaiI ACGT 2 cut(s) 235, 245
TaqII GACCGA 1 cut(s) 310
TasI AATT 3 cut(s) 605, 704, 741
TauI GCSGC 2 cut(s) 500, 845
Tru1I TTAA 2 cut(s) 161, 686
Tru9I TTAA 2 cut(s) 161, 686
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 2 cut(s) 83, 878
TseI GCWGC 5 cut(s) 420, 423, 491, 494, 690
Tsp45I GTSAC 2 cut(s) 83, 878
TspDTI ATGAA 4 cut(s) 237, 668, 698, 702
TspGWI ACGGA 3 cut(s) 53, 290, 711
TspRI CASTG 1 cut(s) 774
XapI RAATTY 2 cut(s) 605, 704
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 3 cut(s) 114, 179, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.