Rh3CG164100

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008825
Physical Location & Seq
Forward (+)
13873736 .. 13882520
8785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG164100.1

Sequence Viewer

Length: 510 bp
ATGGCTTCGAGAGTTGTTGATCAACAACAAGCCAGAGAAGTAAACTCTGTCAAAGTTACTAGTTGTCACTTCTCATTGGATGGAAAACTTCTTACTAGTGGCGGCCATGATAAAGAGGCTATATTATGGTACACTGATACTCTGAAGGCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATGCCACGTCTTGCAACATCTTCATTCAACAAAACTGTACGCAGCCATGTGAACCTTTTGGCCAAATCTGCATCCTGGCTACGTCATAACTATAGCAAAAAAGATCCATTATCAAGTCCCCGAATGAAGTCCTCTCCTATATATGAGACCTTGGAGCCAGAAGATCCATTATCAAGTCCCAAGCCCCATAACCATGAAACTATCAAACTTAATTCTTCTCCTTGCTGTGCTTCCAGCAGCACTGGCTGCTGGAAAGAACTCTTTCCCCATCAAACGTTCCAACAAAACCCATTAGTGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

169

Amino Acids

18.88

Weight (kDa)

8.91

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 13 - 74 4.4e-06 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 17 - 84 2.1e-10 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 17 - 83 5.8e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 18 - 83 1.7e-10 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 18 - 83 1.4e-08 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 18 - 85 8.5e-08 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AclI AACGTT 1 cut(s) 482
AclWI GGATC 2 cut(s) 305, 365
AcoI YGGCCR 2 cut(s) 103, 267
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 2 cut(s) 131, 246
AgsI TTSAA 2 cut(s) 164, 235
AhlI ACTAGT 2 cut(s) 59, 95
AjiI CACGTC 1 cut(s) 215
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 2 cut(s) 305, 365
AoxI GGCC 2 cut(s) 103, 267
ApeKI GCWGC 3 cut(s) 249, 444, 453
Asp700I GAANNNNTTC 1 cut(s) 468
BalI TGGCCA 1 cut(s) 269
BbvI GCAGC 3 cut(s) 261, 440, 456
BccI CCATC 2 cut(s) 74, 483
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 347
BcuI ACTAGT 2 cut(s) 59, 95
BfaI CTAG 3 cut(s) 60, 96, 508
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 4 cut(s) 103, 250, 445, 454
BlsI GCNGC 4 cut(s) 104, 251, 446, 455
Bme1390I CCNGG 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 454
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 85, 278
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 3 cut(s) 261, 440, 456
BshFI GGCC 2 cut(s) 105, 269
BslFI GGGAC 2 cut(s) 309, 369
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 309, 369
BsnI GGCC 2 cut(s) 105, 269
Bso31I GGTCTC 1 cut(s) 347
Bsp143I GATC 3 cut(s) 19, 310, 370
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 105, 269
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 2 cut(s) 305, 365
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 3 cut(s) 19, 310, 370
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 244
BstAPI GCANNNNNTGC 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 209
BstF5I GGATG 2 cut(s) 85, 278
BstKTI GATC 3 cut(s) 22, 313, 373
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 3 cut(s) 19, 310, 370
BstMWI GCNNNNNNNGC 3 cut(s) 275, 450, 453
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 3 cut(s) 261, 440, 456
BstX2I RGATCY 2 cut(s) 310, 370
BstYI RGATCY 2 cut(s) 310, 370
BsuRI GGCC 2 cut(s) 105, 269
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 2 cut(s) 85, 278
BtsIMutI CAGTG 2 cut(s) 132, 447
Cac8I GCNNGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 130, 245
CviAII CATG 4 cut(s) 107, 208, 254, 401
CviQI GTAC 2 cut(s) 130, 245
DpnI GATC 3 cut(s) 21, 312, 372
DpnII GATC 3 cut(s) 19, 310, 370
EaeI YGGCCR 2 cut(s) 103, 267
Eco130I CCWWGG 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 4 cut(s) 110, 211, 257, 404
FaqI GGGAC 2 cut(s) 309, 369
FatI CATG 4 cut(s) 106, 207, 253, 400
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 4 cut(s) 103, 250, 445, 454
FokI GGATG 2 cut(s) 92, 265
Fsp4HI GCNGC 4 cut(s) 103, 250, 445, 454
FspBI CTAG 3 cut(s) 60, 96, 508
GluI GCNGC 4 cut(s) 103, 250, 445, 454
HaeIII GGCC 2 cut(s) 105, 269
Hin1II CATG 4 cut(s) 110, 211, 257, 404
Hpy166II GTNNAC 3 cut(s) 43, 132, 259
Hpy188I TCNGA 2 cut(s) 144, 204
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 3 cut(s) 43, 132, 259
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 3 cut(s) 214, 289, 482
HpyCH4V TGCA 2 cut(s) 221, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 450, 453
HpySE526I ACGT 3 cut(s) 214, 289, 482
Hsp92II CATG 4 cut(s) 110, 211, 257, 404
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 19, 310, 370
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 7 cut(s) 46, 268, 295, 378, 435, 442, 454
Lsp1109I GCAGC 3 cut(s) 261, 440, 456
LweI GCATC 1 cut(s) 287
MaeI CTAG 3 cut(s) 60, 96, 508
MaeII ACGT 3 cut(s) 214, 289, 482
MaeIII GTNAC 3 cut(s) 55, 65, 502
MalI GATC 3 cut(s) 21, 312, 372
MboI GATC 3 cut(s) 19, 310, 370
MboII GAAGA 4 cut(s) 176, 219, 380, 414
MflI RGATCY 2 cut(s) 310, 370
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 1 cut(s) 418
MluNI TGGCCA 1 cut(s) 269
MnlI CCTC 2 cut(s) 109, 349
Mox20I TGGCCA 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 269
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 3 cut(s) 275, 450, 453
NdeII GATC 3 cut(s) 19, 310, 370
NlaIII CATG 4 cut(s) 110, 211, 257, 404
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 2 cut(s) 65, 502
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 468
PkrI GCNGC 4 cut(s) 104, 251, 446, 455
Psp1406I AACGTT 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 363
PsuI RGATCY 2 cut(s) 310, 370
RsaI GTAC 2 cut(s) 131, 246
RsaNI GTAC 2 cut(s) 130, 245
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 4 cut(s) 103, 250, 445, 454
Sau3AI GATC 3 cut(s) 19, 310, 370
ScrFI CCNGG 1 cut(s) 283
SetI ASST 7 cut(s) 178, 217, 264, 292, 359, 485, 509
SfaNI GCATC 1 cut(s) 287
SfcI CTRYAG 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 399
SpeI ACTAGT 2 cut(s) 59, 95
SphI GCATGC 1 cut(s) 211
Sse9I AATT 1 cut(s) 418
SsiI CCGC 1 cut(s) 102
SspMI CTAG 3 cut(s) 60, 96, 508
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 3 cut(s) 217, 292, 485
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 418
TauI GCSGC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 139, 454
TseFI GTSAC 2 cut(s) 65, 502
TseI GCWGC 3 cut(s) 249, 444, 453
Tsp45I GTSAC 2 cut(s) 65, 502
TspDTI ATGAA 3 cut(s) 219, 347, 417
TspRI CASTG 2 cut(s) 139, 454
XceI RCATGY 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 3 cut(s) 60, 96, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.