Rh1BG178000

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008825
Physical Location & Seq
Reverse (-)
28380476 .. 28384908
4433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG178000.1

Sequence Viewer

Length: 996 bp
ATGGATCGATTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCTCATAATGATGCAGACCCTAGAGATGCTGTTGGTCGATGTATGGATGTCAGCAAAGGGTTCACATTTACGGAAGTAAACTCTGTTAAAGCAAGCCCAAGCAAAGTTAATAGTTGTCACTTCTCATCGGATGGAAAACTTCTTACTAGTGGCGGCGTTGATAAAAAGGCTGTATTGTGGTACACTGATACTCTGAAGCCAAAATCTACACTTGAAGAACATTCAGCTTGGATAACTGATGTTCGGTTCGGTCCGAGCATGCCACGTCTTGCAACATCTTCATTCGACAAAACTGTCAGAGTCTGGGATGCTGATAATCCTGGTTATTCACTTCGTACATTCATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATCTGTTCTTGTGATGGGGATGGTGAGATACGCTACTGGAGTATTCACCATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACGACTCACGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGCAGCTGAGAATGTTGTATCTATACTGGATGTGGAGTCACAGGCTTGTCGGCATTCATTACAGGGACATACAACGCCTATTGGTTATGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGGGGAATGTGTTATTGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATCCAAGAGAACAAGACAATGACTCTATCAGAACATGAAGGTCTTATTGCTTCGTTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCGGCTAGTCATGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

331

Amino Acids

36.5

Weight (kDa)

5.66

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 40 - 106 6.5e-06 CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd PF24782 40 - 244 6.2e-11 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 43 - 166 1.4e-11 TEP-1 second beta-propeller
WD40_Gbeta PF25391 48 - 330 2.4e-17 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 49 - 170 1.1e-14 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 49 - 183 3.3e-20 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 50 - 166 1.6e-19 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 50 - 180 3.1e-26 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 52 - 124 3.4e-08 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 52 - 124 1.5e-08 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 52 - 124 7.6e-15 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 54 - 124 2.2e-07 WDR3 second beta-propeller domain
WD40 PF00400 84 - 121 9.2e-09 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 87 - 244 2.7e-16 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 92 - 331 1.7e-35 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 105 - 196 8.7e-07 WDR90/POC16, second beta-propeller
WD40 PF00400 127 - 165 7.9e-07 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 129 - 177 2.7e-07 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 131 - 245 2.5e-08 WDR3 second beta-propeller domain
WDR55 PF24796 136 - 302 2.5e-06 WDR55
Beta-prop_WDR3_1st PF25173 153 - 291 1.9e-13 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 177 - 278 7.9e-10 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 178 - 330 4.2e-23 WDR5 beta-propeller domain
WD40_Prp19 PF24814 180 - 330 1.1e-16 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 189 - 330 1.5e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 190 - 324 4e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 191 - 330 9.4e-15 WDR3 first beta-propeller domain
WD40 PF00400 210 - 244 9.7e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 856
AciI CCGC 1 cut(s) 207
AclWI GGATC 5 cut(s) 12, 31, 674, 687, 748
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 1 cut(s) 269
AcvI CACGTG 1 cut(s) 544
AfaI GTAC 2 cut(s) 236, 391
AfiI CCNNNNNNNGG 4 cut(s) 442, 563, 712, 856
AgsI TTSAA 3 cut(s) 269, 526, 770
AhlI ACTAGT 1 cut(s) 200
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 2 cut(s) 808, 840
AluBI AGCT 6 cut(s) 281, 510, 587, 777, 862, 985
AluI AGCT 6 cut(s) 281, 510, 587, 777, 862, 985
AlwI GGATC 5 cut(s) 12, 31, 674, 687, 748
AlwNI CAGNNNCTG 2 cut(s) 357, 587
ApeKI GCWGC 4 cut(s) 507, 578, 581, 584
ApoI RAATTY 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 3 cut(s) 488, 491, 701
AvaII GGWCC 1 cut(s) 305
BamHI GGATCC 1 cut(s) 679
BbrPI CACGTG 1 cut(s) 544
BbvI GCAGC 4 cut(s) 519, 565, 593, 596
BccI CCATC 5 cut(s) 14, 179, 461, 467, 819
BciT130I CCWGG 1 cut(s) 375
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 75, 201, 963
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 5 cut(s) 208, 508, 579, 582, 585
BlsI GCNGC 5 cut(s) 209, 509, 580, 583, 586
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 681
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 5 cut(s) 55, 70, 352, 419, 710
BpmI CTGGAG 1 cut(s) 511
Bsa29I ATCGAT 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 4 cut(s) 442, 563, 712, 856
Bse1I ACTGG 3 cut(s) 494, 612, 850
BseBI CCWGG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 9 cut(s) 25, 106, 190, 367, 478, 616, 701, 811, 870
BseLI CCNNNNNNNGG 4 cut(s) 442, 563, 712, 856
BseMII CTCAG 2 cut(s) 579, 698
BseNI ACTGG 3 cut(s) 494, 612, 850
BseXI GCAGC 4 cut(s) 519, 565, 593, 596
BseYI CCCAGC 1 cut(s) 675
BshVI ATCGAT 1 cut(s) 7
BslFI GGGAC 3 cut(s) 414, 547, 660
BslI CCNNNNNNNGG 4 cut(s) 442, 563, 712, 856
BsmFI GGGAC 3 cut(s) 414, 547, 660
BsmI GAATGC 1 cut(s) 634
Bsp143I GATC 4 cut(s) 4, 23, 679, 740
Bsp19I CCATGG 1 cut(s) 502
BspACI CCGC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 580, 699
BspDI ATCGAT 1 cut(s) 7
BspHI TCATGA 1 cut(s) 967
BspLI GGNNCC 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 5 cut(s) 12, 31, 674, 687, 748
BsrI ACTGG 3 cut(s) 494, 612, 850
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 4 cut(s) 4, 23, 679, 740
BssT1I CCWWGG 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 349, 940
BstBAI YACGTR 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 148, 314
BstDEI CTNAG 2 cut(s) 588, 707
BstDSI CCRYGG 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 9 cut(s) 25, 106, 190, 367, 478, 616, 701, 811, 870
BstKTI GATC 4 cut(s) 7, 26, 682, 743
BstMBI GATC 4 cut(s) 4, 23, 679, 740
BstMWI GCNNNNNNNGC 3 cut(s) 584, 783, 926
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 4 cut(s) 519, 565, 593, 596
BstX2I RGATCY 2 cut(s) 23, 679
BstYI RGATCY 2 cut(s) 23, 679
Bsu15I ATCGAT 1 cut(s) 7
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 502
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 9 cut(s) 25, 106, 190, 367, 478, 616, 701, 811, 870
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 3 cut(s) 237, 420, 827
Cac8I GCNNGC 2 cut(s) 148, 314
CaiI CAGNNNCTG 2 cut(s) 357, 587
CciI TCATGA 1 cut(s) 967
Cfr13I GGNCC 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 7
CpoI CGGWCCG 1 cut(s) 305
Csp6I GTAC 2 cut(s) 235, 390
CspI CGGWCCG 1 cut(s) 305
CviAII CATG 5 cut(s) 313, 397, 503, 905, 968
CviQI GTAC 2 cut(s) 235, 390
DdeI CTNAG 2 cut(s) 588, 707
DpnI GATC 4 cut(s) 6, 25, 681, 742
DpnII GATC 4 cut(s) 4, 23, 679, 740
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 502
Eco32I GATATC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 544
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 5 cut(s) 316, 400, 506, 908, 971
FaqI GGGAC 3 cut(s) 414, 547, 660
FatI CATG 5 cut(s) 312, 396, 502, 904, 967
Fnu4HI GCNGC 5 cut(s) 208, 508, 579, 582, 585
FokI GGATG 9 cut(s) 32, 113, 197, 374, 485, 623, 688, 798, 857
Fsp4HI GCNGC 5 cut(s) 208, 508, 579, 582, 585
FspBI CTAG 3 cut(s) 75, 201, 963
GluI GCNGC 5 cut(s) 208, 508, 579, 582, 585
GsaI CCCAGC 1 cut(s) 679
GsuI CTGGAG 1 cut(s) 511
Hin1II CATG 5 cut(s) 316, 400, 506, 908, 971
HincII GTYRAC 1 cut(s) 936
HindII GTYRAC 1 cut(s) 936
HinfI GANTC 7 cut(s) 44, 354, 538, 549, 617, 716, 892
HphI GGTGA 3 cut(s) 488, 491, 701
Hpy166II GTNNAC 4 cut(s) 117, 133, 237, 936
Hpy188I TCNGA 7 cut(s) 184, 249, 309, 353, 725, 740, 901
Hpy188III TCNNGA 4 cut(s) 29, 744, 968, 988
Hpy8I GTNNAC 4 cut(s) 117, 133, 237, 936
HpyAV CCTTC 3 cut(s) 693, 746, 902
HpyCH4III ACNGT 2 cut(s) 349, 940
HpyCH4IV ACGT 2 cut(s) 319, 543
HpyCH4V TGCA 6 cut(s) 68, 326, 410, 515, 581, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 783, 926
HpyF3I CTNAG 2 cut(s) 588, 707
HpySE526I ACGT 2 cut(s) 319, 543
Hsp92II CATG 5 cut(s) 316, 400, 506, 908, 971
Kzo9I GATC 4 cut(s) 4, 23, 679, 740
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 4 cut(s) 519, 565, 593, 596
LweI GCATC 5 cut(s) 55, 70, 352, 419, 710
MaeI CTAG 3 cut(s) 75, 201, 963
MaeII ACGT 2 cut(s) 319, 543
MaeIII GTNAC 4 cut(s) 170, 618, 845, 940
MalI GATC 4 cut(s) 6, 25, 681, 742
MboI GATC 4 cut(s) 4, 23, 679, 740
MboII GAAGA 3 cut(s) 281, 324, 579
MflI RGATCY 2 cut(s) 23, 679
MluCI AATT 2 cut(s) 770, 791
MlyI GAGTC 6 cut(s) 53, 363, 532, 626, 710, 886
MmeI TCCRAC 2 cut(s) 577, 839
MnlI CCTC 3 cut(s) 10, 567, 706
MseI TTAA 3 cut(s) 141, 162, 981
MslI CAYNNNNRTG 2 cut(s) 63, 801
MspA1I CMGCKG 2 cut(s) 510, 587
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 584, 783, 926
NcoI CCATGG 1 cut(s) 502
NdeII GATC 4 cut(s) 4, 23, 679, 740
NlaIII CATG 5 cut(s) 316, 400, 506, 908, 971
NlaIV GGNNCC 1 cut(s) 681
NmuCI GTSAC 2 cut(s) 170, 618
NspI RCATGY 1 cut(s) 316
PaeI GCATGC 1 cut(s) 316
PagI TCATGA 1 cut(s) 967
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 1 cut(s) 549
PflFI GACNNNGTC 1 cut(s) 719
PflMI CCANNNNNTGG 1 cut(s) 856
PkrI GCNGC 5 cut(s) 209, 509, 580, 583, 586
PleI GAGTC 6 cut(s) 52, 362, 532, 625, 710, 886
PmaCI CACGTG 1 cut(s) 544
PmlI CACGTG 1 cut(s) 544
PpsI GAGTC 6 cut(s) 52, 362, 532, 625, 710, 886
Ppu21I YACGTR 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 373
PspCI CACGTG 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 675
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 2 cut(s) 357, 587
PsuI RGATCY 2 cut(s) 23, 679
PsyI GACNNNGTC 1 cut(s) 719
PvuII CAGCTG 2 cut(s) 510, 587
RsaI GTAC 2 cut(s) 236, 391
RsaNI GTAC 2 cut(s) 235, 390
RseI CAYNNNNRTG 2 cut(s) 63, 801
Rsr2I CGGWCCG 1 cut(s) 305
RsrII CGGWCCG 1 cut(s) 305
SaqAI TTAA 3 cut(s) 141, 162, 981
SatI GCNGC 5 cut(s) 208, 508, 579, 582, 585
Sau3AI GATC 4 cut(s) 4, 23, 679, 740
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 6 cut(s) 53, 363, 532, 626, 710, 886
ScrFI CCNGG 1 cut(s) 375
SfaNI GCATC 5 cut(s) 55, 70, 352, 419, 710
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 2 cut(s) 63, 801
SpeI ACTAGT 1 cut(s) 200
SphI GCATGC 1 cut(s) 316
Sse9I AATT 2 cut(s) 770, 791
SsiI CCGC 1 cut(s) 207
SspMI CTAG 3 cut(s) 75, 201, 963
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 2 cut(s) 349, 940
TaiI ACGT 2 cut(s) 322, 546
TaqI TCGA 3 cut(s) 7, 91, 339
TaqII GACCGA 2 cut(s) 293, 709
TasI AATT 2 cut(s) 770, 791
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 3 cut(s) 141, 162, 981
Tru9I TTAA 3 cut(s) 141, 162, 981
TscAI CASTG 3 cut(s) 244, 420, 834
TseFI GTSAC 2 cut(s) 170, 618
TseI GCWGC 4 cut(s) 507, 578, 581, 584
Tsp45I GTSAC 2 cut(s) 170, 618
TspDTI ATGAA 6 cut(s) 324, 385, 627, 765, 785, 921
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 3 cut(s) 244, 420, 834
Tth111I GACNNNGTC 1 cut(s) 719
Van91I CCANNNNNTGG 1 cut(s) 856
VpaK11BI GGWCC 1 cut(s) 305
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 1 cut(s) 791
XceI RCATGY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XspI CTAG 3 cut(s) 75, 201, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.