Rh2DG048100

Transcriptional corepressor LEUNIG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008825
Physical Location & Seq
Forward (+)
3443233 .. 3446475
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG048100.1

Sequence Viewer

Length: 534 bp
ATGGACCGGTTTGTGGATGACCGATCTTTAGAGGATAATTTTGAATCATTCTTATCAGATGATGATGCTGACCCTAGGGGTAGAGTTGCTCGTCGTTCAGATGTCAGCAGTGGCTTCACTTTTTCGGAAGTCGGGGTTATTCCTGCAAGTTCAAGTGGAGTCGAGTGCTGTCACTTCTCAGCAGATGGGAAAACACTTGCCACTGGTGGGCATGATCGAAAGGCTGTATTGTGGTGCACAGAGTCCTTCGCTGTAAAGTCTACGCTTGAAGAGCATTCTCAGTGGATAACGGATGTTCGATTCAGTCCTAGTATGTCAAGGCTAGCTACATCTTCCGCTGACAAAAGTGTCAGGGTTTGGGATGTTGATAATCCTGGCTATTCACTTCGTACTTTTATGGGACATTCTACAACTGTTATGTCACTTGACTTCCACCCTACTAAAGAGGATCTTCTGTGCTCTTGTGATAACAACAGTGAGATAAGATACTGGAGTATCAAGAATGGTAGTTGTATTGGATTTTCCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

177

Amino Acids

19.63

Weight (kDa)

5.04

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Gbeta PF25391 38 - 171 3.9e-12 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 41 - 103 1.5e-08 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 41 - 170 3.4e-10 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 42 - 141 2.2e-14 TEP-1 second beta-propeller
WD40 PF00400 43 - 78 4.4e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 45 - 124 7.2e-11 WDHD1 first WD40 domain
EIF3I PF24805 45 - 124 3.1e-06 EIF3I
Beta-prop_WDR5 PF25175 50 - 172 1e-26 WDR5 beta-propeller domain
WD40_Prp19 PF24814 50 - 172 6.3e-22 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 51 - 166 5e-23 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 51 - 170 2.1e-19 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML PF23409 54 - 170 7.3e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd PF25172 54 - 165 4.3e-12 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 57 - 165 2.2e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 58 - 124 1.1e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 81 - 170 1.1e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 83 - 172 2.2e-13 CDC20/Fizzy WD40 domain
WD40 PF00400 86 - 121 1.4e-09 WD domain, G-beta repeat
WDR55 PF24796 86 - 172 1.6e-06 WDR55
Beta-prop_THOC3 PF25174 92 - 172 4.2e-19 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 104 - 170 1.3e-06 WDR90/POC16, second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 260
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 456
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 2 cut(s) 13, 207
AgeI ACCGGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 44, 153, 269
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw21I GWGCWC 2 cut(s) 239, 461
Alw44I GTGCAC 1 cut(s) 235
AlwI GGATC 1 cut(s) 456
ApaLI GTGCAC 1 cut(s) 235
AsiGI ACCGGT 1 cut(s) 6
AspA2I CCTAGG 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 4
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 239
BaeI ACNNNNGTAYC 4 cut(s) 478, 478, 511, 511
Bbv12I GWGCWC 2 cut(s) 239, 461
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 375
BfaI CTAG 3 cut(s) 75, 309, 323
BlnI CCTAGG 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 55
BmtI GCTAGC 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 511
BsaJI CCNNGG 2 cut(s) 74, 525
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 207
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 2 cut(s) 208, 494
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 74, 525
BseGI GGATG 3 cut(s) 22, 298, 367
BseLI CCNNNNNNNGG 2 cut(s) 13, 207
BseMII CTCAG 2 cut(s) 192, 293
BseNI ACTGG 2 cut(s) 208, 494
BseSI GKGCMC 1 cut(s) 239
BshTI ACCGGT 1 cut(s) 6
BsiHKAI GWGCWC 2 cut(s) 239, 461
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 13, 207
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 239, 461
Bsp143I GATC 3 cut(s) 23, 214, 448
BspACI CCGC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 191, 292
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 2 cut(s) 208, 494
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 74, 525
BssMI GATC 3 cut(s) 23, 214, 448
BssT1I CCWWGG 2 cut(s) 74, 525
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 415, 476
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 178, 279
BstF5I GGATG 3 cut(s) 22, 298, 367
BstKTI GATC 3 cut(s) 26, 217, 451
BstMBI GATC 3 cut(s) 23, 214, 448
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstSLI GKGCMC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BtsCI GGATG 3 cut(s) 22, 298, 367
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 4 cut(s) 115, 201, 287, 481
Cac8I GCNNGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 390
CspAI ACCGGT 1 cut(s) 6
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 114, 224, 322, 326, 378
CviKI_1 RGCY 5 cut(s) 114, 224, 322, 326, 378
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 2 cut(s) 178, 279
DpnI GATC 3 cut(s) 25, 216, 450
DpnII GATC 3 cut(s) 23, 214, 448
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 74, 525
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 74, 525
ErhI CCWWGG 2 cut(s) 74, 525
FaeI CATG 1 cut(s) 215
FaiI YATR 5 cut(s) 213, 314, 398, 419, 532
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 414
FatI CATG 1 cut(s) 211
FblI GTMKAC 1 cut(s) 260
FokI GGATG 3 cut(s) 29, 305, 374
FspBI CTAG 3 cut(s) 75, 309, 323
GsuI CTGGAG 1 cut(s) 511
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 215
HinfI GANTC 4 cut(s) 44, 159, 242, 300
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 237, 261
Hpy188I TCNGA 3 cut(s) 58, 100, 127
Hpy188III TCNNGA 1 cut(s) 499
Hpy8I GTNNAC 2 cut(s) 237, 261
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 415, 476
HpyCH4V TGCA 2 cut(s) 146, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 2 cut(s) 178, 279
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 3 cut(s) 23, 214, 448
LguI GCTCTTC 1 cut(s) 264
LpnPI CCDG 7 cut(s) 20, 156, 189, 337, 360, 387, 475
LweI GCATC 1 cut(s) 55
MaeI CTAG 3 cut(s) 75, 309, 323
MaeIII GTNAC 2 cut(s) 170, 420
MalI GATC 3 cut(s) 25, 216, 450
MboI GATC 3 cut(s) 23, 214, 448
MboII GAAGA 3 cut(s) 281, 324, 443
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 239, 461
MluCI AATT 1 cut(s) 37
MlyI GAGTC 2 cut(s) 168, 251
MnlI CCTC 2 cut(s) 25, 439
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 3 cut(s) 23, 214, 448
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 215
NmuCI GTSAC 2 cut(s) 170, 420
PciSI GCTCTTC 1 cut(s) 264
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 44, 300
PinAI ACCGGT 1 cut(s) 6
PleI GAGTC 2 cut(s) 167, 250
PpsI GAGTC 2 cut(s) 167, 250
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 23, 214, 448
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 168, 251
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 2 cut(s) 239, 461
SetI ASST 2 cut(s) 328, 531
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 37
SsiI CCGC 1 cut(s) 336
SspMI CTAG 3 cut(s) 75, 309, 323
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 2 cut(s) 74, 525
TaaI ACNGT 2 cut(s) 415, 476
TaqI TCGA 3 cut(s) 162, 217, 298
TaqII GACCGA 1 cut(s) 36
TasI AATT 1 cut(s) 37
TfiI GAWTC 2 cut(s) 44, 300
TscAI CASTG 4 cut(s) 115, 208, 287, 481
TseFI GTSAC 2 cut(s) 170, 420
Tsp45I GTSAC 2 cut(s) 170, 420
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 4 cut(s) 115, 208, 287, 481
VneI GTGCAC 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 4
XmaJI CCTAGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 3 cut(s) 75, 309, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.