Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008825

Physical Location & Seq

Genomic Coordinates Forward (+)

7055740 .. 7068375

Gene Structure 12636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGAGCTACCATAGCCATGCCCTCTTACCAAACCAGTGTGGCTCAAGCTTGGTCCAGAACATAGATGCACCACTTCCTCTGGTTTGGTCAATCCTTCGCCAGTTTGATAACCCTCAAGCCTACAAGCAGTTCGTAAGGAGCTGCACAATGCGCGCTGGGGATGGAGGCATAGGAAGCATATGTGAAGTGATGGTCAGCACTGGCTTACCTGCCAAAACCAGCATGGAGAGGCTCGACAAGCTTGACAATGACAAGCATGTCCTTGATTTCAGCATTGTTGGCGAAGAACACAAGCTGTTGATTCAAGGGTTCACATTTACAGAAGTAAACTCTGTCAAAGTTACTAGTTGTCACTTCTTATTGGATGGAAAACTTCTTACTAGTGGCGACCACGATAAAGAGGCCATATTATGGTACACTGATACTCTGAAGTCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATGCCACGTCTTGCAACATCTTCATTCAACAAAACTGCATGGCAGAGAAAATCGTGCAAAAGTACGTTCATAGGAGGTGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

193

Amino Acids

21.47

Weight (kDa)

6.15

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	20 - 97	6.4e-06	Polyketide cyclase / dehydrase and lipid transport
WD40_Prp19	PF24814	110 - 177	5.7e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	113 - 180	9.8e-07	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	113 - 174	1.3e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	114 - 176	8.9e-08	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008825)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04170
malus_domestica	MD15G1103400.v1.1 MD15G1117000.v1.1
prunus_persica	Prupe.1G470800_v2.0.a1
pyrus_communis	pycom08g11740 pycom15g09430 pycom15g10540
rosa_chinensis	RchiOBHm_Chr2g0089711 RchiOBHm_Chr5g0080001
rosa_multiflora	Rmu_sc0000008.1_g000005 Rmu_sc0000665.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029520
rosa_rugosa	Rorug05G0201800
rosa_samantha	Rh1AG211600 Rh1BG178000 Rh1CG195900 Rh2CG048700 Rh2DG048100 Rh3CG164100 Rh3CG352800 Rh5DG080700
rosa_wichuraiana	Rw1G017870 Rw2G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccII	CGCG	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	419, 559
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	308, 452, 523
AhlI	ACTAGT	2 cut(s)	347, 383
AjiI	CACGTC	1 cut(s)	503
AluBI	AGCT	6 cut(s)	9, 51, 144, 244, 298, 464
AluI	AGCT	6 cut(s)	9, 51, 144, 244, 298, 464
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	156, 158
AspS9I	GGNCC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	158, 187, 362
BcuI	ACTAGT	2 cut(s)	347, 383
BfaI	CTAG	2 cut(s)	348, 384
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	31, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	3 cut(s)	37, 103, 208
BseGI	GGATG	2 cut(s)	169, 373
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseNI	ACTGG	3 cut(s)	37, 103, 208
BsePI	GCGCGC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	414
BsnI	GGCC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	220
BsrI	ACTGG	3 cut(s)	37, 103, 208
BssHII	GCGCGC	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	156, 497
BstF5I	GGATG	2 cut(s)	169, 373
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	156, 158
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 153, 177, 241, 282
BstNSI	RCATGY	2 cut(s)	263, 499
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	407
BtrI	CACGTC	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	169, 373
BtsIMutI	CAGTG	3 cut(s)	44, 201, 420
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	156, 497
CfoI	GCGC	2 cut(s)	156, 158
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	418, 558
CviAII	CATG	5 cut(s)	20, 226, 260, 496, 534
CviQI	GTAC	2 cut(s)	418, 558
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	452
FaeI	CATG	5 cut(s)	23, 229, 263, 499, 537
FatI	CATG	5 cut(s)	19, 225, 259, 495, 533
FauNDI	CATATG	1 cut(s)	182
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	176, 380
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	348, 384
GlaI	GCGC	2 cut(s)	155, 157
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	407
HhaI	GCGC	2 cut(s)	156, 158
Hin1II	CATG	5 cut(s)	23, 229, 263, 499, 537
Hin6I	GCGC	2 cut(s)	154, 156
HinP1I	GCGC	2 cut(s)	154, 156
HindIII	AAGCTT	2 cut(s)	49, 242
HinfI	GANTC	1 cut(s)	304
Hpy166II	GTNNAC	3 cut(s)	315, 331, 420
Hpy188I	TCNGA	2 cut(s)	432, 492
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	3 cut(s)	315, 331, 420
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	502, 560
HpyCH4V	TGCA	5 cut(s)	71, 147, 509, 533, 552
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 153, 177, 241, 282
HpySE526I	ACGT	2 cut(s)	502, 560
Hsp92II	CATG	5 cut(s)	23, 229, 263, 499, 537
HspAI	GCGC	2 cut(s)	154, 156
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	8 cut(s)	50, 68, 71, 116, 144, 189, 225, 235
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	348, 384
MaeII	ACGT	2 cut(s)	502, 560
MaeIII	GTNAC	2 cut(s)	343, 353
MboII	GAAGA	3 cut(s)	299, 464, 507
MnlI	CCTC	8 cut(s)	35, 90, 126, 161, 225, 397, 563, 568
MslI	CAYNNNNRTG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	5 cut(s)	15, 153, 177, 241, 282
NdeI	CATATG	1 cut(s)	182
NlaIII	CATG	5 cut(s)	23, 229, 263, 499, 537
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	2 cut(s)	263, 499
PaeI	GCATGC	1 cut(s)	499
PauI	GCGCGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	304
PflMI	CCANNNNNTGG	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	55
PteI	GCGCGC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	419, 559
RsaNI	GTAC	2 cut(s)	418, 558
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	55
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	46, 117
SmoI	CTYRAG	2 cut(s)	46, 117
SpeI	ACTAGT	2 cut(s)	347, 383
SphI	GCATGC	1 cut(s)	499
SspMI	CTAG	2 cut(s)	348, 384
TaiI	ACGT	2 cut(s)	505, 563
TaqI	TCGA	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	304
TscAI	CASTG	3 cut(s)	44, 208, 427
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	507, 553
TspRI	CASTG	3 cut(s)	44, 208, 427
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	2 cut(s)	263, 499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XspI	CTAG	2 cut(s)	348, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.