Rh3CG352800

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008825
Physical Location & Seq
Forward (+)
42711823 .. 42712317
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG352800.1

Sequence Viewer

Length: 309 bp
ATGTATGGATGTCAGCAAAGGTACATATCCAATTGTTCTCTCTCACCTTTTAATTTGAAGTTGATTCAAGGGTTCACATTTACAGAAGTGAACTCTATCAAAGTTACTAGTTGTCACTGCTTATTGGATGGAAAACTTCTTACTAGTGGCGGCCATGATAAAGAGGCTATATTATGGTACACTGATACTCTGAAGCCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACTGATGTTCGGTTCAGTCCGAGCATGCCACGTCTTGCAACATCTTCATTCAACAAAACTGTCAGTCTGGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

102

Amino Acids

11.39

Weight (kDa)

7.64

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 3 - 90 1.3e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 34 - 99 4.3e-08 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 34 - 98 9.9e-07 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 35 - 99 1.3e-07 THOC3 beta-propeller domain
WD40_Prp19 PF24814 42 - 99 7.7e-07 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 2 cut(s) 23, 179
AgsI TTSAA 4 cut(s) 58, 68, 212, 283
AhlI ACTAGT 2 cut(s) 107, 143
AjiI CACGTC 1 cut(s) 263
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AoxI GGCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 36
BccI CCATC 1 cut(s) 122
BcuI ACTAGT 2 cut(s) 107, 143
BfaI CTAG 2 cut(s) 108, 144
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 263
BseGI GGATG 2 cut(s) 14, 133
BshFI GGCC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 153
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 257
BstF5I GGATG 2 cut(s) 14, 133
BstNSI RCATGY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 153
BtrI CACGTC 1 cut(s) 263
BtsCI GGATG 2 cut(s) 14, 133
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 115, 180
Cac8I GCNNGC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 22, 178
CviAII CATG 2 cut(s) 155, 256
CviJI RGCY 4 cut(s) 153, 167, 196, 224
CviKI_1 RGCY 4 cut(s) 153, 167, 196, 224
CviQI GTAC 2 cut(s) 22, 178
EaeI YGGCCR 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 212
FaeI CATG 2 cut(s) 158, 259
FaiI YATR 6 cut(s) 6, 26, 156, 170, 175, 257
FatI CATG 2 cut(s) 154, 255
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 2 cut(s) 21, 140
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 2 cut(s) 108, 144
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 2 cut(s) 158, 259
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 3 cut(s) 75, 91, 180
Hpy188I TCNGA 2 cut(s) 192, 252
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 3 cut(s) 75, 91, 180
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 2 cut(s) 158, 259
LpnPI CCDG 1 cut(s) 284
MaeI CTAG 2 cut(s) 108, 144
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 103, 113
MboII GAAGA 2 cut(s) 224, 267
MfeI CAATTG 1 cut(s) 31
MluCI AATT 2 cut(s) 31, 52
MnlI CCTC 1 cut(s) 157
MseI TTAA 1 cut(s) 51
MunI CAATTG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 308
NlaIII CATG 2 cut(s) 158, 259
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 259
PaeI GCATGC 1 cut(s) 259
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 152
RsaI GTAC 2 cut(s) 23, 179
RsaNI GTAC 2 cut(s) 22, 178
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 151
SetI ASST 4 cut(s) 23, 49, 226, 265
SgeI CNNG 9 cut(s) 80, 120, 156, 167, 221, 264, 268, 273, 278
SpeI ACTAGT 2 cut(s) 107, 143
SphI GCATGC 1 cut(s) 259
Sse9I AATT 2 cut(s) 31, 52
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 108, 144
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 265
TasI AATT 2 cut(s) 31, 52
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 2 cut(s) 122, 187
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 2 cut(s) 122, 187
XceI RCATGY 1 cut(s) 259
XspI CTAG 2 cut(s) 108, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.