Rmu_sc0000008.1_g000005

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000008.1
OG0008825
Physical Location & Seq
Reverse (-)
13134 .. 17609
4476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000008.1_g000005.1.cds

Sequence Viewer

Length: 1176 bp
ctgatccctcatcgttgcaggcagaaagagagagatagaggttctgggcggttggttgggctgattggggaaaacggtggagctgcagacgccaaaaatctacagttgaaggtgttcagaattgtcgtctacttcgtgtatgtaatttcgctgacacagtcttcaatatcagtggctgatatggatcgatttgtggaggatggatctcttgatgataatgtggagtcttttttatctcataatgatgcagaccctagagatgctgttggtcgatctatggatgtcagcaaagggttcacatttacggaagtaaactctgttaaagcaagcccaagcaaagttactagttgtcacttctcatcggatggaaaacttcttactagtggcggctttgataaaaaggctgtattgtggtacactgatactctgaagccaaaatctacacttgaagaacattcagctttaataactgatgttcggttcagtccgagcatgccacgtcttgcaacatcttcattcgacaaaactgtcagggtctgggatgctgataatcctggttattcacttcgtacgttcatgggacatactgcaccagtgatttcagtagatttccacccgaacaaggacgaccttatctgttcttgtgatgtggatggtgagatacgctactggagtattcaccatggcagctgtgcaagagtgttcaagggtgggaccactcaggtgagattccaacctcgtcttggaagatatcttgctgcagcagctgagaatgttgtatctatactggatgtggattcacaggcttgtcggcatacattacagggacatacaaagtctattaattctgtgtgctgggatccttctggtgagttccttgcatccctgagtgaggactcggtcagagtttggactttcggatcaggaaatgaagtggaatgtgttcatgaattgagctgtaatggcaataaatttcattcctgtgttttccatccaacatatacttcactgctggtcattggttgttaccagtctttggagctatggaacatccaagagggcaagacaatgactctatcagcacatgaaggtcttattgcttcgttggctgtgtcaaccgtaacgggtttggttgcttcggctagtcatgataagtgggttaagctctggaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

391

Amino Acids

43.05

Weight (kDa)

6.32

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AccB7I CCANNNNNTGG 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 49, 387
AclWI GGATC 5 cut(s) 192, 211, 854, 867, 928
AcsI RAATTY 1 cut(s) 971
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 416, 571
AfiI CCNNNNNNNGG 4 cut(s) 622, 743, 892, 1036
AgsI TTSAA 4 cut(s) 109, 165, 449, 706
AhlI ACTAGT 2 cut(s) 344, 380
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 1 cut(s) 553
AjuI GAANNNNNNNTTGG 2 cut(s) 988, 1020
AleI CACNNNNGTG 1 cut(s) 722
AluBI AGCT 7 cut(s) 83, 461, 690, 767, 957, 1042, 1165
AluI AGCT 7 cut(s) 83, 461, 690, 767, 957, 1042, 1165
AlwI GGATC 5 cut(s) 192, 211, 854, 867, 928
AlwNI CAGNNNCTG 3 cut(s) 176, 537, 767
ApeKI GCWGC 5 cut(s) 83, 687, 758, 761, 764
ApoI RAATTY 1 cut(s) 971
AseI ATTAAT 1 cut(s) 843
Asp700I GAANNNNTTC 2 cut(s) 113, 942
AspS9I GGNCC 1 cut(s) 714
AsuHPI GGTGA 4 cut(s) 668, 671, 736, 881
AvaII GGWCC 1 cut(s) 714
BamHI GGATCC 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 5 cut(s) 70, 699, 745, 773, 776
BccI CCATC 4 cut(s) 194, 359, 647, 999
BciT130I CCWGG 1 cut(s) 555
BcuI ACTAGT 2 cut(s) 344, 380
BfaI CTAG 4 cut(s) 255, 345, 381, 1143
BfmI CTRYAG 3 cut(s) 84, 101, 759
BisI GCNGC 6 cut(s) 84, 388, 688, 759, 762, 765
BlsI GCNGC 6 cut(s) 85, 389, 689, 760, 763, 766
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 714
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 714
BmiI GGNNCC 2 cut(s) 715, 861
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 4 cut(s) 235, 250, 532, 890
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 691
Bsa29I ATCGAT 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 682
Bsc4I CCNNNNNNNGG 4 cut(s) 622, 743, 892, 1036
Bse1I ACTGG 4 cut(s) 593, 674, 792, 1030
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 555
BseCI ATCGAT 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 682
BseGI GGATG 9 cut(s) 205, 286, 370, 547, 658, 796, 881, 991, 1050
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 4 cut(s) 622, 743, 892, 1036
BseMII CTCAG 3 cut(s) 734, 759, 878
BseNI ACTGG 4 cut(s) 593, 674, 792, 1030
BseXI GCAGC 5 cut(s) 70, 699, 745, 773, 776
BseYI CCCAGC 1 cut(s) 855
BsgI GTGCAG 1 cut(s) 573
BshVI ATCGAT 1 cut(s) 187
BsiWI CGTACG 1 cut(s) 569
BslFI GGGAC 3 cut(s) 594, 727, 840
BslI CCNNNNNNNGG 4 cut(s) 622, 743, 892, 1036
BsmFI GGGAC 3 cut(s) 594, 727, 840
Bsp143I GATC 6 cut(s) 3, 184, 203, 272, 859, 920
Bsp19I CCATGG 1 cut(s) 682
BspACI CCGC 2 cut(s) 49, 387
BspCNI CTCAG 3 cut(s) 733, 760, 879
BspDI ATCGAT 1 cut(s) 187
BspHI TCATGA 2 cut(s) 946, 1147
BspLI GGNNCC 2 cut(s) 715, 861
BspMAI CTGCAG 2 cut(s) 88, 763
BspPI GGATC 5 cut(s) 192, 211, 854, 867, 928
BsrI ACTGG 4 cut(s) 593, 674, 792, 1030
BssECI CCNNGG 1 cut(s) 682
BssMI GATC 6 cut(s) 3, 184, 203, 272, 859, 920
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 682
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 5 cut(s) 77, 105, 159, 529, 1120
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 3 cut(s) 20, 328, 494
BstDEI CTNAG 3 cut(s) 720, 768, 887
BstDSI CCRYGG 1 cut(s) 682
BstENI CCTNNNNNAGG 1 cut(s) 890
BstF5I GGATG 9 cut(s) 205, 286, 370, 547, 658, 796, 881, 991, 1050
BstKTI GATC 6 cut(s) 6, 187, 206, 275, 862, 923
BstMBI GATC 6 cut(s) 3, 184, 203, 272, 859, 920
BstMWI GCNNNNNNNGC 4 cut(s) 89, 764, 963, 1106
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 3 cut(s) 84, 101, 759
BstV1I GCAGC 5 cut(s) 70, 699, 745, 773, 776
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 203, 859
BstYI RGATCY 2 cut(s) 203, 859
Bsu15I ATCGAT 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 682
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 9 cut(s) 205, 286, 370, 547, 658, 796, 881, 991, 1050
BtsI GCAGTG 1 cut(s) 1007
BtsIMutI CAGTG 4 cut(s) 177, 417, 600, 1007
Cac8I GCNNGC 3 cut(s) 20, 328, 494
CaiI CAGNNNCTG 3 cut(s) 176, 537, 767
CciI TCATGA 2 cut(s) 946, 1147
Cfr13I GGNCC 1 cut(s) 714
ClaI ATCGAT 1 cut(s) 187
CseI GACGC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 415, 570
CspCI CAANNNNNGTGG 2 cut(s) 153, 188
CviAII CATG 6 cut(s) 493, 577, 683, 947, 1085, 1148
CviQI GTAC 2 cut(s) 415, 570
DdeI CTNAG 3 cut(s) 720, 768, 887
DpnI GATC 6 cut(s) 5, 186, 205, 274, 861, 922
DpnII GATC 6 cut(s) 3, 184, 203, 272, 859, 920
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 682
Eco32I GATATC 1 cut(s) 752
Eco47I GGWCC 1 cut(s) 714
Eco57I CTGAAG 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 553
EcoRV GATATC 1 cut(s) 752
EcoT14I CCWWGG 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 682
FaeI CATG 6 cut(s) 496, 580, 686, 950, 1088, 1151
FaqI GGGAC 3 cut(s) 594, 727, 840
FatI CATG 6 cut(s) 492, 576, 682, 946, 1084, 1147
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 6 cut(s) 84, 388, 688, 759, 762, 765
FokI GGATG 9 cut(s) 212, 293, 377, 554, 665, 803, 868, 978, 1037
Fsp4HI GCNGC 6 cut(s) 84, 388, 688, 759, 762, 765
FspBI CTAG 4 cut(s) 255, 345, 381, 1143
GluI GCNGC 6 cut(s) 84, 388, 688, 759, 762, 765
GsaI CCCAGC 1 cut(s) 859
GsuI CTGGAG 1 cut(s) 691
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 6 cut(s) 496, 580, 686, 950, 1088, 1151
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HinfI GANTC 5 cut(s) 224, 729, 797, 896, 1072
HphI GGTGA 4 cut(s) 668, 671, 736, 881
Hpy166II GTNNAC 5 cut(s) 130, 297, 313, 417, 1116
Hpy188I TCNGA 6 cut(s) 119, 364, 429, 489, 905, 920
Hpy188III TCNNGA 5 cut(s) 209, 924, 947, 1148, 1168
Hpy8I GTNNAC 5 cut(s) 130, 297, 313, 417, 1116
HpyAV CCTTC 3 cut(s) 103, 873, 1082
HpyCH4III ACNGT 5 cut(s) 77, 105, 159, 529, 1120
HpyCH4IV ACGT 2 cut(s) 499, 572
HpyCH4V TGCA 8 cut(s) 18, 86, 248, 506, 590, 695, 761, 881
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 764, 963, 1106
HpyF3I CTNAG 3 cut(s) 720, 768, 887
HpySE526I ACGT 2 cut(s) 499, 572
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 6 cut(s) 496, 580, 686, 950, 1088, 1151
Kzo9I GATC 6 cut(s) 3, 184, 203, 272, 859, 920
LmnI GCTCC 2 cut(s) 80, 1039
Lsp1109I GCAGC 5 cut(s) 70, 699, 745, 773, 776
LweI GCATC 4 cut(s) 235, 250, 532, 890
MaeI CTAG 4 cut(s) 255, 345, 381, 1143
MaeII ACGT 2 cut(s) 499, 572
MaeIII GTNAC 4 cut(s) 340, 350, 1025, 1120
MalI GATC 6 cut(s) 5, 186, 205, 274, 861, 922
MboI GATC 6 cut(s) 3, 184, 203, 272, 859, 920
MboII GAAGA 4 cut(s) 153, 461, 504, 759
MflI RGATCY 2 cut(s) 203, 859
MluCI AATT 5 cut(s) 120, 144, 844, 950, 971
MlyI GAGTC 3 cut(s) 233, 890, 1066
MmeI TCCRAC 2 cut(s) 757, 1019
MnlI CCTC 6 cut(s) 18, 32, 190, 747, 886, 1051
MroXI GAANNNNTTC 2 cut(s) 113, 942
MseI TTAA 4 cut(s) 321, 464, 843, 1161
MslI CAYNNNNRTG 3 cut(s) 243, 722, 981
MspA1I CMGCKG 2 cut(s) 690, 767
MspR9I CCNGG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 4 cut(s) 89, 764, 963, 1106
NcoI CCATGG 1 cut(s) 682
NdeII GATC 6 cut(s) 3, 184, 203, 272, 859, 920
NlaIII CATG 6 cut(s) 496, 580, 686, 950, 1088, 1151
NlaIV GGNNCC 2 cut(s) 715, 861
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 1 cut(s) 496
OliI CACNNNNGTG 1 cut(s) 722
PaeI GCATGC 1 cut(s) 496
PagI TCATGA 2 cut(s) 946, 1147
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 113, 942
PfeI GAWTC 2 cut(s) 729, 797
Pfl23II CGTACG 1 cut(s) 569
PflFI GACNNNGTC 2 cut(s) 157, 899
PflMI CCANNNNNTGG 1 cut(s) 1036
PkrI GCNGC 6 cut(s) 85, 389, 689, 760, 763, 766
PleI GAGTC 3 cut(s) 232, 890, 1066
PpsI GAGTC 3 cut(s) 232, 890, 1066
PshBI ATTAAT 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 553
PspFI CCCAGC 1 cut(s) 855
PspGI CCWGG 1 cut(s) 553
PspLI CGTACG 1 cut(s) 569
PspN4I GGNNCC 2 cut(s) 715, 861
PspPI GGNCC 1 cut(s) 714
PstI CTGCAG 2 cut(s) 88, 763
PstNI CAGNNNCTG 3 cut(s) 176, 537, 767
PsuI RGATCY 2 cut(s) 203, 859
PsyI GACNNNGTC 2 cut(s) 157, 899
PvuII CAGCTG 2 cut(s) 690, 767
RsaI GTAC 2 cut(s) 416, 571
RsaNI GTAC 2 cut(s) 415, 570
RseI CAYNNNNRTG 3 cut(s) 243, 722, 981
SaqAI TTAA 4 cut(s) 321, 464, 843, 1161
SatI GCNGC 6 cut(s) 84, 388, 688, 759, 762, 765
Sau3AI GATC 6 cut(s) 3, 184, 203, 272, 859, 920
Sau96I GGNCC 1 cut(s) 714
SchI GAGTC 3 cut(s) 233, 890, 1066
ScrFI CCNGG 1 cut(s) 555
SfaNI GCATC 4 cut(s) 235, 250, 532, 890
SfcI CTRYAG 3 cut(s) 84, 101, 759
SinI GGWCC 1 cut(s) 714
SmiMI CAYNNNNRTG 3 cut(s) 243, 722, 981
SpeI ACTAGT 2 cut(s) 344, 380
SphI GCATGC 1 cut(s) 496
Sse9I AATT 5 cut(s) 120, 144, 844, 950, 971
SsiI CCGC 2 cut(s) 49, 387
SspMI CTAG 4 cut(s) 255, 345, 381, 1143
StyD4I CCNGG 1 cut(s) 553
StyI CCWWGG 1 cut(s) 682
TaaI ACNGT 5 cut(s) 77, 105, 159, 529, 1120
TaiI ACGT 2 cut(s) 502, 575
TaqI TCGA 3 cut(s) 187, 271, 519
TaqII GACCGA 1 cut(s) 889
TasI AATT 5 cut(s) 120, 144, 844, 950, 971
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 2 cut(s) 729, 797
Tru1I TTAA 4 cut(s) 321, 464, 843, 1161
Tru9I TTAA 4 cut(s) 321, 464, 843, 1161
TscAI CASTG 4 cut(s) 177, 424, 600, 1014
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 5 cut(s) 83, 687, 758, 761, 764
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 7 cut(s) 504, 565, 935, 945, 963, 965, 1101
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 4 cut(s) 177, 424, 600, 1014
Tth111I GACNNNGTC 2 cut(s) 157, 899
Van91I CCANNNNNTGG 1 cut(s) 1036
VpaK11BI GGWCC 1 cut(s) 714
VspI ATTAAT 1 cut(s) 843
XagI CCTNNNNNAGG 1 cut(s) 890
XapI RAATTY 1 cut(s) 971
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 740
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 113, 942
XspI CTAG 4 cut(s) 255, 345, 381, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.