Rroxscaffold_1G00029520

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008825
Physical Location & Seq
Forward (+)
38093142 .. 38094072
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029520.1

Sequence Viewer

Length: 393 bp
ATGGATCGATCGGCGAGCTCATTCCGAACTCATCCAAGGAAACCCGAAGTCGTGCCGACGTCGGAGCTGCAATTTCGGCCGGGTCGAGAAAACGTAAACTGCGCCGCCTTGCTGCACCACCGTGGGCTCGAATCGTCGGCGGCGACCACCACGAGAGACGATCGGAAGGAGGAGGCGACCCCGCCGGTGAAGTTTCACGGCGGAGGTGGCGGAATTGGCCGGAAAAGTCGGGCTATATTATGGTACATTGATACTCTGAAGCCAAAATCTACACTTGAAGAACATTCAGCTTTGATAACGATGTTCGGTTCAGTCCGAGCATGCCACGTCTTGCAACATCTTCATTCAACAAAGCTGTCGATGGGATGCGATAATGTGAGTGTAATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

130

Amino Acids

14.36

Weight (kDa)

9.45

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 62
AciI CCGC 5 cut(s) 105, 140, 182, 201, 210
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 77, 217
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 2 cut(s) 278, 348
AjiI CACGTC 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 4 cut(s) 18, 67, 290, 355
AluI AGCT 4 cut(s) 18, 67, 290, 355
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 77, 217
ApeKI GCWGC 2 cut(s) 67, 112
AspLEI GCGC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 199
BanII GRGCYC 2 cut(s) 20, 129
BauI CACGAG 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 54, 99
BccI CCATC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 214
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 150
BisI GCNGC 4 cut(s) 68, 105, 113, 141
BlsI GCNGC 4 cut(s) 69, 106, 114, 142
Bme1390I CCNGG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 35, 121
Bse118I RCCGGY 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 35, 121
BseGI GGATG 2 cut(s) 31, 371
BseRI GAGGAG 1 cut(s) 185
BseX3I CGGCCG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 54, 99
BsgI GTGCAG 1 cut(s) 98
Bsh1285I CGRYCG 3 cut(s) 11, 80, 163
BshFI GGCC 2 cut(s) 79, 219
BshVI ATCGAT 1 cut(s) 7
BsiEI CGRYCG 3 cut(s) 11, 80, 163
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 3 cut(s) 80, 185, 220
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 79, 219
Bsp1286I GDGCHC 2 cut(s) 20, 129
Bsp143I GATC 3 cut(s) 4, 8, 160
BspACI CCGC 5 cut(s) 105, 140, 182, 201, 210
BspANI GGCC 2 cut(s) 79, 219
BspDI ATCGAT 1 cut(s) 7
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 35, 121
BssMI GATC 3 cut(s) 4, 8, 160
BssNI GRCGYC 1 cut(s) 59
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 16, 322
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 31, 371
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 7, 11, 163
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 4, 8, 160
BstMCI CGRYCG 3 cut(s) 11, 80, 163
BstMWI GCNNNNNNNGC 3 cut(s) 76, 207, 216
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 54, 99
BstZI CGGCCG 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 2 cut(s) 79, 219
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 121
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 2 cut(s) 31, 371
Cac8I GCNNGC 2 cut(s) 16, 322
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 321
CviJI RGCY 9 cut(s) 18, 67, 79, 127, 219, 233, 262, 290, 355
CviKI_1 RGCY 9 cut(s) 18, 67, 79, 127, 219, 233, 262, 290, 355
CviQI GTAC 1 cut(s) 244
DpnI GATC 3 cut(s) 6, 10, 162
DpnII GATC 3 cut(s) 4, 8, 160
EaeI YGGCCR 2 cut(s) 77, 217
EagI CGGCCG 1 cut(s) 77
EciI GGCGGA 2 cut(s) 216, 225
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 20, 129
Eco52I CGGCCG 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 2 cut(s) 20, 129
ErhI CCWWGG 1 cut(s) 35
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 1 cut(s) 324
FaiI YATR 3 cut(s) 236, 241, 322
FatI CATG 1 cut(s) 320
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 68, 105, 113, 141
FokI GGATG 2 cut(s) 18, 378
FriOI GRGCYC 2 cut(s) 20, 129
Fsp4HI GCNGC 4 cut(s) 68, 105, 113, 141
GlaI GCGC 1 cut(s) 103
GluI GCNGC 4 cut(s) 68, 105, 113, 141
HaeIII GGCC 2 cut(s) 79, 219
HapII CCGG 3 cut(s) 80, 185, 220
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 324
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 131
HpaII CCGG 3 cut(s) 80, 185, 220
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 6 cut(s) 26, 64, 165, 258, 317, 392
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 3 cut(s) 61, 64, 139
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 3 cut(s) 59, 93, 327
HpyCH4V TGCA 3 cut(s) 70, 115, 334
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 207, 216
HpySE526I ACGT 3 cut(s) 59, 93, 327
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 324
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 4, 8, 160
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 3 cut(s) 93, 198, 233
Lsp1109I GCAGC 2 cut(s) 54, 99
LweI GCATC 1 cut(s) 356
MaeII ACGT 3 cut(s) 59, 93, 327
MalI GATC 3 cut(s) 6, 10, 162
MboI GATC 3 cut(s) 4, 8, 160
MboII GAAGA 2 cut(s) 290, 332
MhlI GDGCHC 2 cut(s) 20, 129
MluCI AATT 2 cut(s) 71, 213
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 163, 166, 197
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 3 cut(s) 80, 185, 220
MspR9I CCNGG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 76, 207, 216
NciI CCSGG 1 cut(s) 81
NdeII GATC 3 cut(s) 4, 8, 160
NlaIII CATG 1 cut(s) 324
NspI RCATGY 1 cut(s) 324
OliI CACNNNNGTG 1 cut(s) 120
PaeI GCATGC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 140
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 4 cut(s) 69, 106, 114, 142
Ple19I CGATCG 2 cut(s) 11, 163
Psp124BI GAGCTC 1 cut(s) 20
PvuI CGATCG 2 cut(s) 11, 163
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 20
SatI GCNGC 4 cut(s) 68, 105, 113, 141
Sau3AI GATC 3 cut(s) 4, 8, 160
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 20, 129
SetI ASST 8 cut(s) 20, 62, 69, 96, 208, 292, 330, 357
SfaNI GCATC 1 cut(s) 356
SgrAI CRCCGGYG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 120
SphI GCATGC 1 cut(s) 324
Sse9I AATT 2 cut(s) 71, 213
SsiI CCGC 5 cut(s) 105, 140, 182, 201, 210
SspI AATATT 1 cut(s) 387
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 3 cut(s) 62, 96, 330
TaqI TCGA 4 cut(s) 7, 85, 129, 359
TasI AATT 2 cut(s) 71, 213
TauI GCSGC 2 cut(s) 107, 143
TfiI GAWTC 1 cut(s) 131
TseI GCWGC 2 cut(s) 67, 112
TspDTI ATGAA 1 cut(s) 332
XceI RCATGY 1 cut(s) 324
ZraI GACGTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.