Rh1AG211600

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008825
Physical Location & Seq
Reverse (-)
40463406 .. 40472390
8985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG211600.1

Sequence Viewer

Length: 930 bp
ATGACACCAAAATTTTGCATAGCTTCCAGCTCCGGCGATGATGATACCCTCAATACTAAGATTGCAAACTATCTTAATACTGTTGTTTCCAGCATTGGGACAAAGCCTTTGACGGTCTTGCTCCAACCAAATCAAGAAGCTTCTGGTGCTGCTTCTATAAAGGTTGAGAAAGAAGAGGAGAGATTGAAGATTTTGGTTGAAGAGGTTGCTGGGTTTTCGAAGAGGGAATCCAAGAACAAGGTGAAAGTTGCCAACGAATTTCAAATCTTGGGATATCAAGCGATTATTATTTTGTTCAATGTTCAGCCCATAGAAACATTTAATGATGCATTTAGGAAATTTCTTGCACACTCAATGAGAAGACTGCCAAAAGCTCCCAAGATTCCAAAGGAGCTGGTAACTACTCCTACTGATGAAACTGACATGATACAATCAACAGGGGGTCACACCGAAGGAGCTGATGGTGGGACCACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGTAGCTGAGAATGTTGTAGCTATACTGGATGTGGAGTCACAGGCTTATCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGTGGAATGTTTTCATGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATCCAAGAGGGCAAGACAATGACTCTACCAGCACATGAAGGTCTTATTGCTTCGGTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCGGCTAGTCATGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

309

Amino Acids

33.99

Weight (kDa)

6.16

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 142 - 308 2e-16 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 149 - 308 5.2e-17 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 152 - 308 6.2e-26 WDR5 beta-propeller domain
WD40_Gbeta PF25391 152 - 308 1.1e-06 G protein beta WD-40 repeat protein
WD40_WDHD1_1st PF24817 159 - 309 3.3e-14 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 170 - 302 3.4e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 172 - 234 8e-07 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 176 - 292 3.6e-07 CDC20/Fizzy WD40 domain
WD40 PF00400 189 - 222 1.9e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 201 - 309 5.2e-08 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 790
AclWI GGATC 3 cut(s) 608, 621, 682
AcsI RAATTY 4 cut(s) 11, 257, 338, 725
AfiI CCNNNNNNNGG 4 cut(s) 96, 497, 646, 790
AgsI TTSAA 4 cut(s) 187, 200, 263, 298
AjuI GAANNNNNNNTTGG 2 cut(s) 742, 774
AleI CACNNNNGTG 1 cut(s) 476
AlwI GGATC 3 cut(s) 608, 621, 682
AlwNI CAGNNNCTG 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 149, 512
ApoI RAATTY 4 cut(s) 11, 257, 338, 725
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AseI ATTAAT 1 cut(s) 597
Asp700I GAANNNNTTC 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 3 cut(s) 253, 490, 635
AsuII TTCGAA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 468
BamHI GGATCC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 136, 499
BccI CCATC 2 cut(s) 455, 753
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 1 cut(s) 513
BisI GCNGC 2 cut(s) 150, 513
BlsI GCNGC 2 cut(s) 151, 514
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 2 cut(s) 469, 615
BmsI GCATC 2 cut(s) 316, 644
BpiI GAAGAC 1 cut(s) 367
Bpu14I TTCGAA 1 cut(s) 218
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 497, 646, 790
Bse1I ACTGG 2 cut(s) 546, 784
BseGI GGATG 4 cut(s) 550, 635, 745, 804
BseLI CCNNNNNNNGG 4 cut(s) 96, 497, 646, 790
BseMII CTCAG 3 cut(s) 488, 513, 632
BseNI ACTGG 2 cut(s) 546, 784
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 136, 499
BseYI CCCAGC 2 cut(s) 209, 609
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 3 cut(s) 112, 481, 594
BslI CCNNNNNNNGG 4 cut(s) 96, 497, 646, 790
BsmFI GGGAC 3 cut(s) 112, 481, 594
BsmI GAATGC 1 cut(s) 568
Bsp119I TTCGAA 1 cut(s) 218
Bsp143I GATC 2 cut(s) 613, 674
BspCNI CTCAG 3 cut(s) 487, 514, 633
BspHI TCATGA 2 cut(s) 700, 901
BspLI GGNNCC 2 cut(s) 469, 615
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 3 cut(s) 608, 621, 682
BspT104I TTCGAA 1 cut(s) 218
BsrI ACTGG 2 cut(s) 546, 784
BssMI GATC 2 cut(s) 613, 674
Bst4CI ACNGT 3 cut(s) 82, 115, 874
Bst6I CTCTTC 3 cut(s) 168, 195, 215
BstBI TTCGAA 1 cut(s) 218
BstDEI CTNAG 4 cut(s) 57, 474, 522, 641
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 4 cut(s) 550, 635, 745, 804
BstKTI GATC 2 cut(s) 616, 677
BstMBI GATC 2 cut(s) 613, 674
BstMWI GCNNNNNNNGC 4 cut(s) 146, 518, 717, 860
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 136, 499
BstV2I GAAGAC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 4 cut(s) 550, 635, 745, 804
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 1 cut(s) 761
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 2 cut(s) 700, 901
Cfr13I GGNCC 1 cut(s) 468
CviAII CATG 4 cut(s) 424, 701, 839, 902
DdeI CTNAG 4 cut(s) 57, 474, 522, 641
DpnI GATC 2 cut(s) 615, 676
DpnII GATC 2 cut(s) 613, 674
Eam1104I CTCTTC 3 cut(s) 168, 195, 215
EarI CTCTTC 3 cut(s) 168, 195, 215
Eco32I GATATC 2 cut(s) 275, 506
Eco47I GGWCC 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoRV GATATC 2 cut(s) 275, 506
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 4 cut(s) 427, 704, 842, 905
FaqI GGGAC 3 cut(s) 112, 481, 594
FatI CATG 4 cut(s) 423, 700, 838, 901
Fnu4HI GCNGC 2 cut(s) 150, 513
FokI GGATG 4 cut(s) 557, 622, 732, 791
Fsp4HI GCNGC 2 cut(s) 150, 513
FspBI CTAG 1 cut(s) 897
GluI GCNGC 2 cut(s) 150, 513
GsaI CCCAGC 2 cut(s) 213, 613
HapII CCGG 1 cut(s) 33
Hin1II CATG 4 cut(s) 427, 704, 842, 905
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 6 cut(s) 227, 382, 483, 551, 650, 826
HpaII CCGG 1 cut(s) 33
HphI GGTGA 3 cut(s) 253, 490, 635
Hpy166II GTNNAC 1 cut(s) 870
Hpy188I TCNGA 2 cut(s) 659, 674
Hpy188III TCNNGA 5 cut(s) 134, 678, 701, 902, 922
Hpy8I GTNNAC 1 cut(s) 870
HpyAV CCTTC 3 cut(s) 446, 627, 836
HpyCH4III ACNGT 3 cut(s) 82, 115, 874
HpyCH4V TGCA 6 cut(s) 18, 65, 329, 347, 515, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 518, 717, 860
HpyF3I CTNAG 4 cut(s) 57, 474, 522, 641
Hsp92II CATG 4 cut(s) 427, 704, 842, 905
Kzo9I GATC 2 cut(s) 613, 674
LmnI GCTCC 6 cut(s) 35, 126, 379, 391, 455, 793
Lsp1109I GCAGC 2 cut(s) 136, 499
LweI GCATC 2 cut(s) 316, 644
MaeI CTAG 1 cut(s) 897
MaeIII GTNAC 5 cut(s) 397, 443, 552, 779, 874
MalI GATC 2 cut(s) 615, 676
MboI GATC 2 cut(s) 613, 674
MboII GAAGA 6 cut(s) 185, 199, 212, 232, 372, 513
MflI RGATCY 1 cut(s) 613
MluCI AATT 6 cut(s) 11, 257, 338, 598, 704, 725
MlyI GAGTC 3 cut(s) 560, 644, 820
MmeI TCCRAC 3 cut(s) 148, 511, 773
MnlI CCTC 7 cut(s) 59, 169, 196, 216, 501, 640, 805
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 696
MseI TTAA 4 cut(s) 75, 321, 597, 915
MslI CAYNNNNRTG 2 cut(s) 476, 735
MspI CCGG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 568
MwoI GCNNNNNNNGC 4 cut(s) 146, 518, 717, 860
NdeII GATC 2 cut(s) 613, 674
NlaIII CATG 4 cut(s) 427, 704, 842, 905
NlaIV GGNNCC 2 cut(s) 469, 615
NmuCI GTSAC 2 cut(s) 443, 552
NsiI ATGCAT 1 cut(s) 331
NspV TTCGAA 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 476
PagI TCATGA 2 cut(s) 700, 901
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 3 cut(s) 227, 382, 483
PflFI GACNNNGTC 1 cut(s) 653
PflMI CCANNNNNTGG 1 cut(s) 790
PkrI GCNGC 2 cut(s) 151, 514
PleI GAGTC 3 cut(s) 559, 644, 820
PpsI GAGTC 3 cut(s) 559, 644, 820
PshBI ATTAAT 1 cut(s) 597
PspFI CCCAGC 2 cut(s) 209, 609
PspN4I GGNNCC 2 cut(s) 469, 615
PspPI GGNCC 1 cut(s) 468
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 613
PsyI GACNNNGTC 1 cut(s) 653
RseI CAYNNNNRTG 2 cut(s) 476, 735
SaqAI TTAA 4 cut(s) 75, 321, 597, 915
SatI GCNGC 2 cut(s) 150, 513
Sau3AI GATC 2 cut(s) 613, 674
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 3 cut(s) 560, 644, 820
SfaNI GCATC 2 cut(s) 316, 644
SfcI CTRYAG 1 cut(s) 513
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 468
SmiMI CAYNNNNRTG 2 cut(s) 476, 735
Sse9I AATT 6 cut(s) 11, 257, 338, 598, 704, 725
SspMI CTAG 1 cut(s) 897
TaaI ACNGT 3 cut(s) 82, 115, 874
TaqI TCGA 1 cut(s) 218
TaqII GACCGA 1 cut(s) 643
TasI AATT 6 cut(s) 11, 257, 338, 598, 704, 725
TfiI GAWTC 3 cut(s) 227, 382, 483
Tru1I TTAA 4 cut(s) 75, 321, 597, 915
Tru9I TTAA 4 cut(s) 75, 321, 597, 915
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 2 cut(s) 443, 552
TseI GCWGC 2 cut(s) 149, 512
Tsp45I GTSAC 2 cut(s) 443, 552
TspDTI ATGAA 7 cut(s) 429, 561, 689, 699, 717, 719, 855
TspRI CASTG 1 cut(s) 768
Tth111I GACNNNGTC 1 cut(s) 653
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 468
VspI ATTAAT 1 cut(s) 597
XagI CCTNNNNNAGG 1 cut(s) 644
XapI RAATTY 4 cut(s) 11, 257, 338, 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 1 cut(s) 897
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.