Rh1CG195900

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0008825
Physical Location & Seq
Reverse (-)
42873589 .. 42878318
4730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG195900.1

Sequence Viewer

Length: 600 bp
ATGGGACATACTGCATCAGTGATGTCAGTAGATTTCCACCCGAACAAGGACGACCTTATCTGTTCTTGTGATGGGGTTGGTGAGATACGCTACTGGAGTATTCACCATGGCAGCTGTGCAAGAGTGTTCAAGGGTGGGACCACTCAGGTGAGATTCCAACCTCGTCTTGGAAGATATCTTGCTGCAGTAGCTGAGAATGTTGTAGCTATACTGGATGTGGAGTCACAGGCTTATCGGCATTCATTACAGGGACATACAAAGCCTATTAATTCTGTGTGCTGGGATCCTTCTGGTGAGTTCCTTGCATCCCTGAGTGAGGACTCGGTCAGAGTTTGGACTTTCGGATCAGGAAATGAAGTGGAATGTTTTCATGAATTGAGCTGTAATGGCAATAAATTTCATTCCTGTGTTTTCCATCCAACATATACTTCACTGCTGGTCATTGGTTGTTACCAGTCTTTGGAGCTATGGAACATCCAAGAGGGCAAGACAATGACTCTACCAGCACATGAAGGTCTTATTGCTTCGGTGGCTGTGTCAACCGTAACGGGTTTGGTTGCTTCGGCTAGTCATGATAAGTGGGTTAAGCTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

199

Amino Acids

21.94

Weight (kDa)

6.23

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 2 - 199 1.1e-24 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 2 - 159 8.7e-16 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2 - 113 6.7e-07 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 2 - 198 6.6e-09 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 5 - 165 1.6e-11 CDC20/Fizzy WD40 domain
WDR55 PF24796 5 - 164 4.2e-06 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 22 - 124 9.7e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 46 - 198 3.5e-26 WDR5 beta-propeller domain
WD40_Prp19 PF24814 46 - 166 1.2e-12 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 47 - 148 3.3e-11 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 59 - 192 1e-08 WDR36/Utp21 first beta-propeller
WD40 PF00400 79 - 112 9.7e-08 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 91 - 199 1.9e-08 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AclWI GGATC 3 cut(s) 278, 291, 352
AcsI RAATTY 1 cut(s) 395
AfiI CCNNNNNNNGG 4 cut(s) 46, 167, 316, 460
AgsI TTSAA 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 6 cut(s) 114, 191, 206, 381, 466, 589
AluI AGCT 6 cut(s) 114, 191, 206, 381, 466, 589
AlwI GGATC 3 cut(s) 278, 291, 352
AlwNI CAGNNNCTG 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 111, 182
ApoI RAATTY 1 cut(s) 395
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 4 cut(s) 92, 95, 160, 305
AvaII GGWCC 1 cut(s) 138
BamHI GGATCC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 123, 169
BccI CCATC 2 cut(s) 65, 423
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 112, 183
BlsI GCNGC 2 cut(s) 113, 184
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 139, 285
BmsI GCATC 2 cut(s) 23, 314
BpmI CTGGAG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 167, 316, 460
Bse1I ACTGG 3 cut(s) 98, 216, 454
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 4 cut(s) 220, 305, 415, 474
BseLI CCNNNNNNNGG 4 cut(s) 46, 167, 316, 460
BseMII CTCAG 3 cut(s) 158, 183, 302
BseNI ACTGG 3 cut(s) 98, 216, 454
BseXI GCAGC 2 cut(s) 123, 169
BseYI CCCAGC 1 cut(s) 279
BslFI GGGAC 3 cut(s) 18, 151, 264
BslI CCNNNNNNNGG 4 cut(s) 46, 167, 316, 460
BsmFI GGGAC 3 cut(s) 18, 151, 264
BsmI GAATGC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 283, 344
Bsp19I CCATGG 1 cut(s) 106
BspCNI CTCAG 3 cut(s) 157, 184, 303
BspHI TCATGA 2 cut(s) 370, 571
BspLI GGNNCC 2 cut(s) 139, 285
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 3 cut(s) 278, 291, 352
BsrI ACTGG 3 cut(s) 98, 216, 454
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 2 cut(s) 283, 344
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 144, 192, 311
BstDSI CCRYGG 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 4 cut(s) 220, 305, 415, 474
BstKTI GATC 2 cut(s) 286, 347
BstMBI GATC 2 cut(s) 283, 344
BstMWI GCNNNNNNNGC 3 cut(s) 188, 387, 530
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 123, 169
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 4 cut(s) 220, 305, 415, 474
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 24, 431
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 2 cut(s) 370, 571
Cfr13I GGNCC 1 cut(s) 138
CviAII CATG 4 cut(s) 107, 371, 509, 572
DdeI CTNAG 3 cut(s) 144, 192, 311
DpnI GATC 2 cut(s) 285, 346
DpnII GATC 2 cut(s) 283, 344
Eco130I CCWWGG 1 cut(s) 106
Eco32I GATATC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 4 cut(s) 110, 374, 512, 575
FaqI GGGAC 3 cut(s) 18, 151, 264
FatI CATG 4 cut(s) 106, 370, 508, 571
Fnu4HI GCNGC 2 cut(s) 112, 183
FokI GGATG 4 cut(s) 227, 292, 402, 461
Fsp4HI GCNGC 2 cut(s) 112, 183
FspBI CTAG 1 cut(s) 567
GluI GCNGC 2 cut(s) 112, 183
GsaI CCCAGC 1 cut(s) 283
GsuI CTGGAG 1 cut(s) 115
Hin1II CATG 4 cut(s) 110, 374, 512, 575
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 4 cut(s) 153, 221, 320, 496
HphI GGTGA 4 cut(s) 92, 95, 160, 305
Hpy166II GTNNAC 1 cut(s) 540
Hpy188I TCNGA 2 cut(s) 329, 344
Hpy188III TCNNGA 4 cut(s) 348, 371, 572, 592
Hpy8I GTNNAC 1 cut(s) 540
HpyAV CCTTC 2 cut(s) 297, 506
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 4 cut(s) 14, 119, 185, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 387, 530
HpyF3I CTNAG 3 cut(s) 144, 192, 311
Hsp92II CATG 4 cut(s) 110, 374, 512, 575
Kzo9I GATC 2 cut(s) 283, 344
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 2 cut(s) 123, 169
LweI GCATC 2 cut(s) 23, 314
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 3 cut(s) 222, 449, 544
MalI GATC 2 cut(s) 285, 346
MboI GATC 2 cut(s) 283, 344
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 283
MluCI AATT 3 cut(s) 268, 374, 395
MlyI GAGTC 3 cut(s) 230, 314, 490
MmeI TCCRAC 2 cut(s) 181, 443
MnlI CCTC 3 cut(s) 171, 310, 475
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 267, 585
MslI CAYNNNNRTG 2 cut(s) 146, 405
MspA1I CMGCKG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 188, 387, 530
NcoI CCATGG 1 cut(s) 106
NdeII GATC 2 cut(s) 283, 344
NlaIII CATG 4 cut(s) 110, 374, 512, 575
NlaIV GGNNCC 2 cut(s) 139, 285
NmuCI GTSAC 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 146
PagI TCATGA 2 cut(s) 370, 571
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 2 cut(s) 113, 184
PleI GAGTC 3 cut(s) 229, 314, 490
PpsI GAGTC 3 cut(s) 229, 314, 490
PshBI ATTAAT 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 139, 285
PspPI GGNCC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 283
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 114
RseI CAYNNNNRTG 2 cut(s) 146, 405
SaqAI TTAA 2 cut(s) 267, 585
SatI GCNGC 2 cut(s) 112, 183
Sau3AI GATC 2 cut(s) 283, 344
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 3 cut(s) 230, 314, 490
SfaNI GCATC 2 cut(s) 23, 314
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 146, 405
Sse9I AATT 3 cut(s) 268, 374, 395
SspMI CTAG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 544
TaqII GACCGA 1 cut(s) 313
TasI AATT 3 cut(s) 268, 374, 395
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 267, 585
Tru9I TTAA 2 cut(s) 267, 585
TscAI CASTG 2 cut(s) 24, 438
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 2 cut(s) 111, 182
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 6 cut(s) 231, 359, 369, 387, 389, 525
TspRI CASTG 2 cut(s) 24, 438
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 138
VspI ATTAAT 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.