Rorug05G0201800

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008825
Physical Location & Seq
Forward (+)
20000955 .. 20002152
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0201800.1

Sequence Viewer

Length: 822 bp
ATGAATCTTGTATTCTCCTCCTCCCCTACCTCAGTCTCGCTCACAAGAACCAGTCATCCAAGAATGCTAGTTCCAGGACAGCTACTACAAGCGTATCATACAACAAGAGGGAAACAAGCCATTGTCTCAAACTCATCATCATCAAAGGTCATTGATCCTACTCCGGCAGCTCAACGCCGATTGGCTCAATACCATCCTACCATTTGGGGTCCCGACCTCATCGACTCCTTCACCACTCACTACACTTATGAATCACATGGCACACGTTTGGAGGGTCTAAAGCAGAATGTAGCCAAAGCCATAGTCGCATCCAGTACTAAAGACGATGCTTGCTCCATTTTGAAGCTTATAGCCTCGGTGCAGCGGTTGGGAGTAGCATGCCACTTCCGAAAAAGTGGAGAAGGAAGCTTCAAAGATAGCTTAAGCAATGACGTGGAGGGACTTTTGAGTTTGTATGAAGCCTCACACCTTGGAATGCCAGGAGAAGATGTTCTGGAGGAAGCCAAGAGATTTAGTTCGAAAATTTTGAAACAATCCGTGGCAACAGTATTGAACGACGATAATCTAACGAAGCGAGTAAAGCAATCACTGCAAACCCCTGTACACTGGAGGATGCCGAGGATAGAAGCTCTGAACTTCATCGATATGTACCAAAGGGATGATTCTAAGAACCTGGCACTCTTGGAGTTGGCTAAATTGGACTATAATCTTGTTCAATCAGTATATCAAATTGAGATAAAGGAGCTTTCTAGGCAAGATATGCATCATATAATTATATGGAAATGTTTTATAACTTATGTTGTCAGAGTGACTATTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

273

Amino Acids

30.69

Weight (kDa)

9.02

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 69 - 131 9.5e-06 Terpene synthase, N-terminal domain
Terpene_synth PF01397 133 - 197 1.6e-16 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
AciI CCGC 1 cut(s) 364
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 522
AfaI GTAC 3 cut(s) 316, 603, 650
AflII CTTAAG 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 5 cut(s) 343, 412, 529, 553, 716
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 3 cut(s) 73, 478, 672
AloI GAACNNNNNNTCC 4 cut(s) 40, 72, 474, 506
AluBI AGCT 7 cut(s) 82, 170, 346, 408, 420, 629, 745
AluI AGCT 7 cut(s) 82, 170, 346, 408, 420, 629, 745
Alw26I GTCTC 2 cut(s) 40, 130
AlwI GGATC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 167, 361
ApoI RAATTY 1 cut(s) 522
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
Asp700I GAANNNNTTC 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 209
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BbvI GCAGC 2 cut(s) 179, 373
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 3 cut(s) 75, 480, 674
BcoDI GTCTC 2 cut(s) 40, 130
BfaI CTAG 2 cut(s) 68, 750
BfrI CTTAAG 1 cut(s) 421
BisI GCNGC 2 cut(s) 168, 362
BlsI GCNGC 2 cut(s) 169, 363
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 75, 480, 674
Bme18I GGWCC 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 2 cut(s) 210, 211
BmrFI CCNGG 3 cut(s) 75, 480, 674
BmsI GCATC 4 cut(s) 316, 317, 603, 772
BpmI CTGGAG 2 cut(s) 515, 628
Bpu14I TTCGAA 1 cut(s) 518
Bsa29I ATCGAT 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 4 cut(s) 354, 469, 537, 617
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bse1I ACTGG 3 cut(s) 51, 312, 611
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 3 cut(s) 75, 480, 674
BseCI ATCGAT 1 cut(s) 642
BseDI CCNNGG 4 cut(s) 354, 469, 537, 617
BseGI GGATG 5 cut(s) 55, 193, 308, 618, 664
BseJI GATNNNNATC 1 cut(s) 762
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 51, 312, 611
BseRI GAGGAG 2 cut(s) 7, 10
BseXI GCAGC 2 cut(s) 179, 373
BsgI GTGCAG 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 642
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 2 cut(s) 195, 453
BsmAI GTCTC 2 cut(s) 40, 130
BsmFI GGGAC 2 cut(s) 195, 453
BsmI GAATGC 2 cut(s) 69, 480
Bsp119I TTCGAA 1 cut(s) 518
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 44
BspDI ATCGAT 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 210, 211
BspPI GGATC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 518
BspTI CTTAAG 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 601
BsrI ACTGG 3 cut(s) 51, 312, 611
BssECI CCNNGG 4 cut(s) 354, 469, 537, 617
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 3 cut(s) 75, 480, 674
Bst4CI ACNGT 1 cut(s) 547
BstAFI CTTAAG 1 cut(s) 421
BstAPI GCANNNNNTGC 2 cut(s) 589, 760
BstAUI TGTACA 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 331, 379
BstDEI CTNAG 2 cut(s) 31, 666
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 5 cut(s) 55, 193, 308, 618, 664
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 40, 130
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 5 cut(s) 305, 580, 589, 751, 760
BstNI CCWGG 3 cut(s) 75, 480, 674
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 3 cut(s) 73, 478, 672
BstV1I GCAGC 2 cut(s) 179, 373
Bsu15I ATCGAT 1 cut(s) 642
BsuTUI ATCGAT 1 cut(s) 642
BtgI CCRYGG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 5 cut(s) 55, 193, 308, 618, 664
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 2 cut(s) 587, 604
Cac8I GCNNGC 2 cut(s) 331, 379
Cfr13I GGNCC 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 642
Csp6I GTAC 3 cut(s) 315, 602, 649
CviAII CATG 2 cut(s) 257, 378
CviQI GTAC 3 cut(s) 315, 602, 649
DdeI CTNAG 2 cut(s) 31, 666
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 209
EcoRII CCWGG 3 cut(s) 73, 478, 672
EcoT14I CCWWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 260, 381
FaqI GGGAC 2 cut(s) 195, 453
FatI CATG 2 cut(s) 256, 377
Fnu4HI GCNGC 2 cut(s) 168, 362
FokI GGATG 5 cut(s) 42, 180, 295, 625, 671
Fsp4HI GCNGC 2 cut(s) 168, 362
FspBI CTAG 2 cut(s) 68, 750
GluI GCNGC 2 cut(s) 168, 362
GsuI CTGGAG 2 cut(s) 515, 628
HapII CCGG 1 cut(s) 164
Hin1II CATG 2 cut(s) 260, 381
HindIII AAGCTT 2 cut(s) 344, 406
HinfI GANTC 4 cut(s) 4, 224, 251, 662
HpaII CCGG 1 cut(s) 164
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 3 cut(s) 389, 633, 806
Hpy188III TCNNGA 2 cut(s) 212, 494
Hpy8I GTNNAC 1 cut(s) 604
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 2 cut(s) 238, 395
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 2 cut(s) 265, 432
HpyCH4V TGCA 3 cut(s) 361, 592, 763
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 580, 589, 751, 760
HpyF3I CTNAG 2 cut(s) 31, 666
HpySE526I ACGT 2 cut(s) 265, 432
Hsp92II CATG 2 cut(s) 260, 381
KflI GGGWCCC 1 cut(s) 209
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 338, 742
Lsp1109I GCAGC 2 cut(s) 179, 373
LweI GCATC 4 cut(s) 316, 317, 603, 772
MaeI CTAG 2 cut(s) 68, 750
MaeII ACGT 2 cut(s) 265, 432
MaeIII GTNAC 1 cut(s) 808
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 497
MluCI AATT 4 cut(s) 522, 695, 729, 771
MlyI GAGTC 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 765
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 364
MspCI CTTAAG 1 cut(s) 421
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 3 cut(s) 75, 480, 674
Mva1269I GAATGC 2 cut(s) 69, 480
MvaI CCWGG 3 cut(s) 75, 480, 674
MwoI GCNNNNNNNGC 5 cut(s) 305, 580, 589, 751, 760
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 260, 381
NlaIV GGNNCC 2 cut(s) 210, 211
NmeAIII GCCGAG 1 cut(s) 642
NmuCI GTSAC 1 cut(s) 808
NsiI ATGCAT 1 cut(s) 765
NspI RCATGY 1 cut(s) 381
NspV TTCGAA 1 cut(s) 518
PaeI GCATGC 1 cut(s) 381
PctI GAATGC 2 cut(s) 69, 480
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 3 cut(s) 4, 251, 662
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 2 cut(s) 169, 363
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 209
PsiI TTATAA 1 cut(s) 791
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 3 cut(s) 73, 478, 672
PspGI CCWGG 3 cut(s) 73, 478, 672
PspN4I GGNNCC 2 cut(s) 210, 211
PspPI GGNCC 1 cut(s) 209
PspPPI RGGWCCY 1 cut(s) 209
RsaI GTAC 3 cut(s) 316, 603, 650
RsaNI GTAC 3 cut(s) 315, 602, 649
RseI CAYNNNNRTG 1 cut(s) 644
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 2 cut(s) 168, 362
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 209
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 3 cut(s) 75, 480, 674
SfaNI GCATC 4 cut(s) 316, 317, 603, 772
SfuI TTCGAA 1 cut(s) 518
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 644
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SphI GCATGC 1 cut(s) 381
Sse9I AATT 4 cut(s) 522, 695, 729, 771
SsiI CCGC 1 cut(s) 364
SspMI CTAG 2 cut(s) 68, 750
StyD4I CCNGG 3 cut(s) 73, 478, 672
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 2 cut(s) 268, 435
TaqI TCGA 3 cut(s) 222, 518, 642
TasI AATT 4 cut(s) 522, 695, 729, 771
TatI WGTACW 2 cut(s) 314, 601
TfiI GAWTC 3 cut(s) 4, 251, 662
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 2 cut(s) 594, 611
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 2 cut(s) 167, 361
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 4 cut(s) 17, 264, 471, 628
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 2 cut(s) 594, 611
Vha464I CTTAAG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 1 cut(s) 522
XceI RCATGY 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 2 cut(s) 68, 750
ZrmI AGTACT 1 cut(s) 316
Zsp2I ATGCAT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.