Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003848

Physical Location & Seq

Genomic Coordinates Forward (+)

8755770 .. 8758487

Gene Structure 2718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAGGCGGCATTGGAATTTGTAACGTCCATGGAATTCTGGAGAATGGCGGTGCTCTGGATATTCTGTCTCCTCATCTCATACTGGAAGCTCTTTCTTCAGCCCAATTCCAATTCTCGTCCTTCCAAATCATCGCCTTCGACTTCGCCGTCAGGATTTAGGCCTGTCTGCGTTATCACTGGTGCTACGTCTGGATTGGGTGCGGCTGCTGCCCATGCTCTCTCCGCCCGCGGTTTCTTCGTGGTTCTCGTTGGACGTTCATCCCACTTGTTAGCAAAGACGATAACGGACATCAAAACTCAGAATGAGAATGCACATCTCAAAGCTTTTGAGGTTGACGTCGCATCCTTCCACTCACTTCTCCTGTTTAAAGCCTCCCTACAGCAGTGGCTTTCTAACTCAGAGATGCACCCTTCCATCCAACTCCTCATCAACAACGCTGGGATACTCGCAACTTCATCTAGACTCACCTCTCAAGGCTATGATCAGATGATGGCTACAAATTACTTAAGTGCATTTTCTCTGAGCAAACTATTATTACCACTTCTCAGAAACAGCCCAGTTCCATCTCGTATAGTGAATGTCACGTCCTTCACACACCGAAGTGTTTTGAATATACAGATTAACAAGGACACTGTATCTGGGAAGTGCTTCAGCAGACCAAAGCAATACCCATTTGCTCATGTCTACGAGTGTTCCAAATTATTCCTCCTGCTCTTCTCCTATGAGCTTCACCGGCAACGTGGCTTGACGGATATATCACGTCAGGTCTCCGTCATTGCTGTAGATCCTGGAGTTGTGGAAACTAACATCATGCGAGAGGTACCCTCATGCCTATCCAGTCTGGCTTTCATAGTTTTGAAACTTCTGGGCCTTTTGCAGTCACCTGAGATTGGAGTTAGTTCCATTCTTGACGCAGCACTCTCCCCACCAGAAACGTCTGGAGTATATTATTTTGGGGGAAGGGGTAGGACCGTCGATTCCTCTGTGCTCTCATACAATGCCAAACTTGGGGAGGAACTTTGGGATGCATCAACTCATCTATTCTTAGAGTCACAGCTTGCTTCCAAGGAAACCATCACTTCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010506 GO:0010508 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

364

Amino Acids

39.9

Weight (kDa)

9.04

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	56 - 198	2e-21	short chain dehydrogenase
adh_short_C2	PF13561	61 - 203	1.9e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04070 AT5G15940 AT5G15940 AT5G15940 AT5G15940
fragaria_vesca	FvH4_6g28040 FvH4_6g28040
malus_domestica	MD15G1141600.v1.1
prunus_persica	Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1 Prupe.8G264400_v2.0.a1
pyrus_communis	pycom15g12790
rosa_chinensis	RchiOBHm_Chr2g0131741 RchiOBHm_Chr5g0041951 RchiOBHm_Chr6g0247031
rosa_laevigata	RLG00000015229 RLG00000019207
rosa_multiflora	Rmu_sc0006001.1_g000002 Rmu_sc0009880.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038630 Rroxscaffold_2G00112660
rosa_rugosa	Rorug05G0197200 Rorug07G0258400
rosa_samantha	Rh2AG351900 Rh2BG359000 Rh5AG282000 Rh5BG287700 Rh5DG296500 Rh6BG031500
rosa_wichuraiana	Rw0G001410 Rw2G028590 Rw2G028600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AatII	GACGTC	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	823
AccB1I	GGYRCC	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	1 cut(s)	231
AciI	CCGC	6 cut(s)	8, 50, 203, 225, 229, 231
AclWI	GGATC	1 cut(s)	782
AcsI	RAATTY	2 cut(s)	17, 35
AcuI	CTGAAG	2 cut(s)	83, 637
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	825
AfiI	CCNNNNNNNGG	2 cut(s)	893, 1011
AflII	CTTAAG	1 cut(s)	508
AgsI	TTSAA	2 cut(s)	613, 862
AjiI	CACGTC	2 cut(s)	588, 764
AjnI	CCWGG	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	603
AluBI	AGCT	4 cut(s)	91, 326, 730, 1060
AluI	AGCT	4 cut(s)	91, 326, 730, 1060
Alw21I	GWGCWC	2 cut(s)	57, 993
Alw26I	GTCTC	2 cut(s)	74, 775
AlwI	GGATC	1 cut(s)	782
AoxI	GGCC	2 cut(s)	161, 871
ApeKI	GCWGC	3 cut(s)	206, 209, 917
ApoI	RAATTY	2 cut(s)	17, 35
Asp700I	GAANNNNTTC	1 cut(s)	650
Asp718I	GGTACC	1 cut(s)	823
AspS9I	GGNCC	2 cut(s)	871, 972
AsuHPI	GGTGA	3 cut(s)	460, 725, 876
AvaII	GGWCC	1 cut(s)	972
BanI	GGYRCC	1 cut(s)	823
Bbv12I	GWGCWC	2 cut(s)	57, 993
BbvI	GCAGC	3 cut(s)	193, 196, 929
BccI	CCATC	4 cut(s)	425, 487, 574, 1085
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	792
BciVI	GTATCC	1 cut(s)	438
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	74, 775
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	380, 783
BfrI	CTTAAG	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	5 cut(s)	9, 204, 207, 210, 918
BlsI	GCNGC	5 cut(s)	10, 205, 208, 211, 919
Bme1390I	CCNGG	1 cut(s)	792
Bme18I	GGWCC	1 cut(s)	972
BmgBI	CACGTC	2 cut(s)	588, 764
BmgT120I	GGNCC	2 cut(s)	871, 972
BmiI	GGNNCC	1 cut(s)	825
BmrFI	CCNGG	1 cut(s)	792
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	4 cut(s)	353, 396, 1018, 1040
BmuI	ACTGGG	1 cut(s)	554
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
BpmI	CTGGAG	3 cut(s)	61, 813, 963
BpuEI	CTTGAG	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	3 cut(s)	30, 229, 1068
Bsc4I	CCNNNNNNNGG	2 cut(s)	893, 1011
Bse118I	RCCGGY	1 cut(s)	735
Bse1I	ACTGG	4 cut(s)	89, 184, 560, 840
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	3 cut(s)	30, 229, 1068
BseGI	GGATG	4 cut(s)	260, 344, 417, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	893, 1011
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	6 cut(s)	314, 414, 515, 562, 879, 1077
BseNI	ACTGG	4 cut(s)	89, 184, 560, 840
BseRI	GAGGAG	2 cut(s)	62, 416
BseXI	GCAGC	3 cut(s)	193, 196, 929
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	163, 873
BshNI	GGYRCC	1 cut(s)	823
BsiHKAI	GWGCWC	2 cut(s)	57, 993
BsiSI	CCGG	1 cut(s)	736
BslI	CCNNNNNNNGG	2 cut(s)	893, 1011
BsmAI	GTCTC	2 cut(s)	74, 775
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	163, 873
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	2 cut(s)	57, 993
Bsp143I	GATC	2 cut(s)	484, 787
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	6 cut(s)	8, 50, 203, 225, 229, 231
BspANI	GGCC	2 cut(s)	163, 873
BspCNI	CTCAG	6 cut(s)	313, 413, 516, 561, 880, 1078
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	825
BspPI	GGATC	1 cut(s)	782
BspQI	GCTCTTC	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	823
BspTI	CTTAAG	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	735
BsrI	ACTGG	4 cut(s)	89, 184, 560, 840
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	3 cut(s)	30, 229, 1068
BssMI	GATC	2 cut(s)	484, 787
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	30, 1068
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	2 cut(s)	637, 976
Bst6I	CTCTTC	1 cut(s)	722
BstACI	GRCGYC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	229, 1062
BstDEI	CTNAG	7 cut(s)	300, 400, 524, 548, 888, 1048, 1086
BstDSI	CCRYGG	2 cut(s)	30, 229
BstF5I	GGATG	4 cut(s)	260, 344, 417, 1033
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	2 cut(s)	487, 790
BstMAI	GTCTC	2 cut(s)	74, 775
BstMBI	GATC	2 cut(s)	484, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 215, 224, 736
BstNI	CCWGG	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	2 cut(s)	380, 783
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	193, 196, 929
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	163, 873
BtgI	CCRYGG	2 cut(s)	30, 229
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	2 cut(s)	588, 764
BtsCI	GGATG	4 cut(s)	260, 344, 417, 1033
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	3 cut(s)	177, 392, 633
Cac8I	GCNNGC	2 cut(s)	229, 1062
Cfr10I	RCCGGY	1 cut(s)	735
Cfr13I	GGNCC	2 cut(s)	871, 972
Cfr42I	CCGCGG	1 cut(s)	232
CseI	GACGC	1 cut(s)	923
Csp6I	GTAC	1 cut(s)	824
CviAII	CATG	5 cut(s)	31, 215, 683, 814, 831
CviQI	GTAC	1 cut(s)	824
DdeI	CTNAG	7 cut(s)	300, 400, 524, 548, 888, 1048, 1086
DpnI	GATC	2 cut(s)	486, 789
DpnII	GATC	2 cut(s)	484, 787
DraI	TTTAAA	1 cut(s)	370
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	30, 1068
Eco147I	AGGCCT	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	972
Eco57I	CTGAAG	2 cut(s)	83, 637
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	30, 1068
EcoT22I	ATGCAT	1 cut(s)	1033
ErhI	CCWWGG	2 cut(s)	30, 1068
FaeI	CATG	5 cut(s)	34, 218, 686, 817, 834
FatI	CATG	5 cut(s)	30, 214, 682, 813, 830
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	5 cut(s)	9, 204, 207, 210, 918
FokI	GGATG	4 cut(s)	247, 331, 404, 1040
Fsp4HI	GCNGC	5 cut(s)	9, 204, 207, 210, 918
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	5 cut(s)	9, 204, 207, 210, 918
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	3 cut(s)	61, 813, 963
HaeIII	GGCC	2 cut(s)	163, 873
HapII	CCGG	1 cut(s)	736
HgaI	GACGC	1 cut(s)	923
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	34, 218, 686, 817, 834
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	3 cut(s)	465, 980, 1052
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	3 cut(s)	460, 725, 876
Hpy166II	GTNNAC	2 cut(s)	337, 688
Hpy188I	TCNGA	6 cut(s)	303, 403, 489, 525, 551, 1087
Hpy188III	TCNNGA	7 cut(s)	40, 58, 153, 192, 462, 911, 942
Hpy8I	GTNNAC	2 cut(s)	337, 688
Hpy99I	CGWCG	2 cut(s)	344, 980
HpyAV	CCTTC	6 cut(s)	132, 147, 358, 423, 601, 957
HpyCH4III	ACNGT	2 cut(s)	637, 976
HpyCH4IV	ACGT	8 cut(s)	26, 188, 256, 339, 587, 742, 763, 938
HpyCH4V	TGCA	5 cut(s)	314, 409, 515, 880, 1031
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 215, 224, 736
HpyF3I	CTNAG	7 cut(s)	300, 400, 524, 548, 888, 1048, 1086
HpySE526I	ACGT	8 cut(s)	26, 188, 256, 339, 587, 742, 763, 938
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	5 cut(s)	34, 218, 686, 817, 834
KpnI	GGTACC	1 cut(s)	827
Ksp22I	TGATCA	1 cut(s)	484
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	484, 787
LguI	GCTCTTC	1 cut(s)	722
Lsp1109I	GCAGC	3 cut(s)	193, 196, 929
LweI	GCATC	4 cut(s)	353, 396, 1018, 1040
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	8 cut(s)	26, 188, 256, 339, 587, 742, 763, 938
MaeIII	GTNAC	4 cut(s)	22, 583, 882, 1053
MalI	GATC	2 cut(s)	486, 789
MboI	GATC	2 cut(s)	484, 787
MboII	GAAGA	3 cut(s)	89, 229, 709
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	2 cut(s)	57, 993
MluCI	AATT	6 cut(s)	17, 35, 106, 112, 502, 701
MlyI	GAGTC	2 cut(s)	459, 1061
MmeI	TCCRAC	2 cut(s)	232, 445
Mph1103I	ATGCAT	1 cut(s)	1033
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	3 cut(s)	369, 509, 624
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	508
MspI	CCGG	1 cut(s)	736
MspR9I	CCNGG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	792
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	209, 215, 224, 736
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	484, 787
NlaIII	CATG	5 cut(s)	34, 218, 686, 817, 834
NlaIV	GGNNCC	1 cut(s)	825
NmuCI	GTSAC	3 cut(s)	583, 882, 1053
NsiI	ATGCAT	1 cut(s)	1033
OliI	CACNNNNGTG	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 246
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	980
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	5 cut(s)	10, 205, 208, 211, 919
PleI	GAGTC	2 cut(s)	459, 1060
PpsI	GAGTC	2 cut(s)	459, 1060
Psp6I	CCWGG	1 cut(s)	790
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	1 cut(s)	825
PspPI	GGNCC	2 cut(s)	871, 972
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	1 cut(s)	825
RsaNI	GTAC	1 cut(s)	824
RseI	CAYNNNNRTG	1 cut(s)	603
SacII	CCGCGG	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	3 cut(s)	369, 509, 624
SatI	GCNGC	5 cut(s)	9, 204, 207, 210, 918
Sau3AI	GATC	2 cut(s)	484, 787
Sau96I	GGNCC	2 cut(s)	871, 972
SchI	GAGTC	2 cut(s)	459, 1061
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	2 cut(s)	57, 993
SfaNI	GCATC	4 cut(s)	353, 396, 1018, 1040
SfcI	CTRYAG	2 cut(s)	380, 783
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	972
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	474, 508
SmoI	CTYRAG	2 cut(s)	474, 508
Sse9I	AATT	6 cut(s)	17, 35, 106, 112, 502, 701
SseBI	AGGCCT	1 cut(s)	163
SsiI	CCGC	6 cut(s)	8, 50, 203, 225, 229, 231
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	2 cut(s)	30, 1068
TaaI	ACNGT	2 cut(s)	637, 976
TaiI	ACGT	8 cut(s)	29, 191, 259, 342, 590, 745, 766, 941
TaqI	TCGA	2 cut(s)	140, 978
TasI	AATT	6 cut(s)	17, 35, 106, 112, 502, 701
TauI	GCSGC	2 cut(s)	11, 206
TfiI	GAWTC	1 cut(s)	980
Tru1I	TTAA	3 cut(s)	369, 509, 624
Tru9I	TTAA	3 cut(s)	369, 509, 624
TscAI	CASTG	3 cut(s)	184, 392, 640
TseFI	GTSAC	3 cut(s)	583, 882, 1053
TseI	GCWGC	3 cut(s)	206, 209, 917
Tsp45I	GTSAC	3 cut(s)	583, 882, 1053
TspDTI	ATGAA	4 cut(s)	17, 249, 447, 841
TspGWI	ACGGA	3 cut(s)	302, 763, 767
TspRI	CASTG	3 cut(s)	184, 392, 640
Vha464I	CTTAAG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	972
XapI	RAATTY	2 cut(s)	17, 35
XbaI	TCTAGA	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	1 cut(s)	462
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.