pycom15g15470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003565
Physical Location & Seq
Reverse (-)
10768608 .. 10769990
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGGCAGCCTCTCTTTCTTTCACGCCTCTTTGTTCCTTCAATTCCATAAACAAACCAAGGGCTTATATCGAAAATTCGACTCGCGGGAAGGTTATTCGGGTGAATGAAGTGTTTCGGAACTCGAAAGCTGCAAACTTTCAGTCTTGGGAGGTCAAGGCCACAGATGGTACTCCAACGACCAAAGTAAATAGCATAGTTTGTTCTGCACGTGAGGGAAATGGTGCGAAAGCGTGTAGTCAATGTGAAGGTACAGGAGTTAATTCTGTAGACCACTTCAACGGACAGTTTAAAGCTGGTGGAGGGGAAGAGGGAGATTTTGTGTGGAGATTGCAATGGTGCCGGGTTTTTGGGCGGCTTCATGACCACGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.46

Weight (kDa)

8.95

Isoelectric Point (pI)

15.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD2_CRD PF25436 63 - 100 7.6e-16 BSD2 cysteine rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 336
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 84, 352
AcsI RAATTY 1 cut(s) 73
AcvI CACGTG 1 cut(s) 209
AfaI GTAC 2 cut(s) 169, 250
AgsI TTSAA 2 cut(s) 40, 277
AluBI AGCT 2 cut(s) 128, 293
AluI AGCT 2 cut(s) 128, 293
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 5, 128
ApoI RAATTY 1 cut(s) 73
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 112
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BanI GGYRCC 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 209
BbvI GCAGC 2 cut(s) 17, 115
BccI CCATC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 3 cut(s) 6, 129, 353
BlsI GCNGC 3 cut(s) 7, 130, 354
Bme1390I CCNGG 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bse3DI GCAATG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 56
BseMI GCAATG 1 cut(s) 338
BseXI GCAGC 2 cut(s) 17, 115
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 340
BsnI GGCC 1 cut(s) 158
BspACI CCGC 2 cut(s) 84, 352
BspANI GGCC 1 cut(s) 158
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 209
BstFNI CGCG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 17, 115
BsuRI GGCC 1 cut(s) 158
CciI TCATGA 1 cut(s) 358
Csp6I GTAC 2 cut(s) 168, 249
CviAII CATG 2 cut(s) 359, 369
CviJI RGCY 6 cut(s) 8, 62, 128, 158, 293, 355
CviKI_1 RGCY 6 cut(s) 8, 62, 128, 158, 293, 355
CviQI GTAC 2 cut(s) 168, 249
DraI TTTAAA 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 56
Eco72I CACGTG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 362, 372
FaiI YATR 5 cut(s) 47, 66, 194, 360, 370
FatI CATG 2 cut(s) 358, 368
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 6, 129, 353
Fsp4HI GCNGC 3 cut(s) 6, 129, 353
GluI GCNGC 3 cut(s) 6, 129, 353
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 340
Hin1II CATG 2 cut(s) 362, 372
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 46, 82, 239
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 131, 206, 331
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 2 cut(s) 362, 372
LpnPI CCDG 3 cut(s) 237, 279, 353
Lsp1109I GCAGC 2 cut(s) 17, 115
MaeII ACGT 1 cut(s) 208
MboII GAAGA 1 cut(s) 317
MluCI AATT 3 cut(s) 40, 73, 259
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 6 cut(s) 19, 36, 142, 205, 293, 301
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 2 cut(s) 258, 288
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 84
NciI CCSGG 1 cut(s) 341
NlaIII CATG 2 cut(s) 362, 372
NlaIV GGNNCC 1 cut(s) 338
PagI TCATGA 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 111
PkrI GCNGC 3 cut(s) 7, 130, 354
PleI GAGTC 1 cut(s) 73
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
PpsI GAGTC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 209
PspCI CACGTG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 338
RsaI GTAC 2 cut(s) 169, 250
RsaNI GTAC 2 cut(s) 168, 249
SaqAI TTAA 2 cut(s) 258, 288
SatI GCNGC 3 cut(s) 6, 129, 353
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 341
SetI ASST 6 cut(s) 93, 130, 153, 211, 250, 295
SfcI CTRYAG 1 cut(s) 264
Sse9I AATT 3 cut(s) 40, 73, 259
SsiI CCGC 2 cut(s) 84, 352
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 211
TaqI TCGA 3 cut(s) 69, 77, 122
TasI AATT 3 cut(s) 40, 73, 259
TauI GCSGC 1 cut(s) 355
Tru1I TTAA 2 cut(s) 258, 288
Tru9I TTAA 2 cut(s) 258, 288
TseI GCWGC 2 cut(s) 5, 128
TspDTI ATGAA 2 cut(s) 120, 347
TspGWI ACGGA 1 cut(s) 294
XapI RAATTY 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.