Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

11147019 .. 11148874

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGGGGGAAGTGCAGCTGGAGCCAACAGGTGAAGGGGAGCGAGACAGAGACCCTACTGACATCGAGCCTCTGCTACCGAACCAGGACGATTCGTCGCCGGCAAGCTCGAGTGAGATCAACAACGAAGACCTTGAGTCTGGCTCTATCCCTTGCTGTCGCATTTGTCTCGAAAGCGATGCCGAACCAGAGGATGAATTGATTTCACCTTGCATGTGCAAAGGCACCCAGCAGTTTGTTCATAGGTCCTGTCTCGATCACTGGCGCTCCGTTAAAGTTATAGCTGCAATAGGTGGCTTTGCATATGTCATGGACAAAGATGGGGCCTTCAGGAATTCATTTAGTGATGGTTGGGATCGTATCTTGTCAAAACATCCTATACCATTTTATTATTGTATAGGGGTACTGGCCTTCTTTGTGCTGCTTGGATTTTTCGGGCTCATACTACACTGTTCATCACTCAATGGCAATGATCCACGGATGTCCGGCTGCCAGAACTGTTGCTACGGTTGGGGAATCTTGGATTGTTTCCCAGCGTCTATGGAGGCTTGCTTTGCCCTGGTTATTGTGTTTGTTGTCATCTTTGCCATTCTTGGCATAGCTTATGGTTTCCTTGCCGCTACTATGGCTATTCAGAGGATCTGGCAGAGACATTATCACATCCTGACCAAGAGGGAACTCACAAAGGAGTATATAGTGGAGGATCTTCACGGATGCTATACCCCACCGAAACTAGATCCCGAACATGAAGCGCGCCTGAAAATGCTGAAGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

260

Amino Acids

29.07

Weight (kDa)

4.99

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	53 - 90	3.3e-12	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	1 cut(s)	754
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	5 cut(s)	363, 467, 647, 711, 731
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	405
AhdI	GACNNNNNGTC	2 cut(s)	94, 136
AjnI	CCWGG	2 cut(s)	84, 558
AluBI	AGCT	4 cut(s)	19, 108, 284, 602
AluI	AGCT	4 cut(s)	19, 108, 284, 602
Alw26I	GTCTC	5 cut(s)	39, 45, 173, 257, 643
AlwI	GGATC	5 cut(s)	363, 467, 647, 711, 731
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	324, 408
ApeKI	GCWGC	4 cut(s)	16, 284, 421, 489
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	3 cut(s)	267, 754, 756
AspS9I	GGNCC	2 cut(s)	246, 324
AsuHPI	GGTGA	2 cut(s)	44, 198
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	28, 271, 408, 476
BccI	CCATC	2 cut(s)	314, 341
BcgI	CGANNNNNNTGC	4 cut(s)	151, 161, 185, 195
BciT130I	CCWGG	2 cut(s)	86, 560
BcoDI	GTCTC	5 cut(s)	39, 45, 173, 257, 643
BfaI	CTAG	1 cut(s)	734
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	5 cut(s)	17, 285, 422, 490, 618
BlsI	GCNGC	5 cut(s)	18, 286, 423, 491, 619
Bme1390I	CCNGG	2 cut(s)	86, 560
Bme18I	GGWCC	1 cut(s)	246
BmeRI	GACNNNNNGTC	2 cut(s)	94, 136
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	246, 324
BmiI	GGNNCC	3 cut(s)	24, 226, 325
BmrFI	CCNGG	2 cut(s)	86, 560
BmsI	GCATC	2 cut(s)	169, 704
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	476, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	266, 411
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	86, 560
BseDI	CCNNGG	2 cut(s)	476, 558
BseGI	GGATG	5 cut(s)	199, 373, 486, 660, 719
BseMI	GCAATG	1 cut(s)	475
BseNI	ACTGG	2 cut(s)	266, 411
BsePI	GCGCGC	1 cut(s)	752
BseXI	GCAGC	4 cut(s)	28, 271, 408, 476
BseYI	CCCAGC	2 cut(s)	228, 532
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	754
BshFI	GGCC	2 cut(s)	326, 410
BshNI	GGYRCC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	101, 486
BsmAI	GTCTC	5 cut(s)	39, 45, 173, 257, 643
BsnI	GGCC	2 cut(s)	326, 410
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	2 cut(s)	326, 410
BspFNI	CGCG	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	24, 226, 325
BspPI	GGATC	5 cut(s)	363, 467, 647, 711, 731
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	266, 411
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	476, 558
BssHII	GCGCGC	1 cut(s)	752
BssMI	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
Bst2UI	CCWGG	2 cut(s)	86, 560
Bst4CI	ACNGT	3 cut(s)	452, 500, 509
BstC8I	GCNNGC	4 cut(s)	102, 106, 550, 754
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	5 cut(s)	199, 373, 486, 660, 719
BstFNI	CGCG	1 cut(s)	754
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	3 cut(s)	267, 754, 756
BstKTI	GATC	7 cut(s)	120, 259, 358, 475, 642, 706, 739
BstMAI	GTCTC	5 cut(s)	39, 45, 173, 257, 643
BstMBI	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 554, 626
BstNI	CCWGG	2 cut(s)	86, 560
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	84, 558
BstUI	CGCG	1 cut(s)	754
BstV1I	GCAGC	4 cut(s)	28, 271, 408, 476
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	3 cut(s)	639, 703, 736
BstYI	RGATCY	3 cut(s)	639, 703, 736
BsuRI	GGCC	2 cut(s)	326, 410
BtgI	CCRYGG	1 cut(s)	476
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	5 cut(s)	199, 373, 486, 660, 719
BtsIMutI	CAGTG	2 cut(s)	259, 448
Cac8I	GCNNGC	4 cut(s)	102, 106, 550, 754
CfoI	GCGC	3 cut(s)	267, 754, 756
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	246, 324
CseI	GACGC	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	3 cut(s)	214, 310, 746
CviQI	GTAC	1 cut(s)	404
DpnI	GATC	7 cut(s)	119, 258, 357, 474, 641, 705, 738
DpnII	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
DriI	GACNNNNNGTC	2 cut(s)	94, 136
Eam1105I	GACNNNNNGTC	2 cut(s)	94, 136
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	109
EcoO109I	RGGNCCY	2 cut(s)	246, 324
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	84, 558
EcoT38I	GRGCYC	1 cut(s)	441
FaeI	CATG	3 cut(s)	217, 313, 749
FatI	CATG	3 cut(s)	213, 309, 745
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	5 cut(s)	17, 285, 422, 490, 618
FokI	GGATG	5 cut(s)	206, 360, 493, 647, 726
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	5 cut(s)	17, 285, 422, 490, 618
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	3 cut(s)	266, 753, 755
GluI	GCNGC	5 cut(s)	17, 285, 422, 490, 618
GsaI	CCCAGC	2 cut(s)	232, 536
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	326, 410
HapII	CCGG	2 cut(s)	101, 486
HgaI	GACGC	1 cut(s)	525
HhaI	GCGC	3 cut(s)	267, 754, 756
Hin1II	CATG	3 cut(s)	217, 313, 749
Hin6I	GCGC	3 cut(s)	265, 752, 754
HinP1I	GCGC	3 cut(s)	265, 752, 754
HinfI	GANTC	3 cut(s)	92, 137, 516
HpaII	CCGG	2 cut(s)	101, 486
HphI	GGTGA	2 cut(s)	44, 198
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	5 cut(s)	170, 254, 331, 664, 740
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	29, 337, 421
HpyCH4III	ACNGT	3 cut(s)	452, 500, 509
HpyCH4V	TGCA	5 cut(s)	16, 213, 219, 287, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 554, 626
Hsp92II	CATG	3 cut(s)	217, 313, 749
HspAI	GCGC	3 cut(s)	265, 752, 754
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
LmnI	GCTCC	3 cut(s)	22, 40, 272
Lsp1109I	GCAGC	4 cut(s)	28, 271, 408, 476
LweI	GCATC	2 cut(s)	169, 704
MaeI	CTAG	1 cut(s)	734
MalI	GATC	7 cut(s)	119, 258, 357, 474, 641, 705, 738
MboI	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
MboII	GAAGA	2 cut(s)	140, 698
MflI	RGATCY	3 cut(s)	639, 703, 736
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	2 cut(s)	197, 334
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	81, 184, 538, 630, 666, 694
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	2 cut(s)	101, 486
MspR9I	CCNGG	2 cut(s)	86, 560
MvaI	CCWGG	2 cut(s)	86, 560
MvnI	CGCG	1 cut(s)	754
MwoI	GCNNNNNNNGC	3 cut(s)	22, 554, 626
NaeI	GCCGGC	1 cut(s)	102
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	217, 313, 749
NlaIV	GGNNCC	3 cut(s)	24, 226, 325
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	109
PauI	GCGCGC	1 cut(s)	752
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	92, 516
PkrI	GCNGC	5 cut(s)	18, 286, 423, 491, 619
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	84, 558
PspFI	CCCAGC	2 cut(s)	228, 532
PspGI	CCWGG	2 cut(s)	84, 558
PspN4I	GGNNCC	3 cut(s)	24, 226, 325
PspPI	GGNCC	2 cut(s)	246, 324
PspPPI	RGGWCCY	1 cut(s)	246
PspXI	VCTCGAGB	1 cut(s)	109
PsrI	GAACNNNNNNTAC	2 cut(s)	488, 520
PsuI	RGATCY	3 cut(s)	639, 703, 736
PteI	GCGCGC	1 cut(s)	752
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	5 cut(s)	17, 285, 422, 490, 618
Sau3AI	GATC	7 cut(s)	117, 256, 355, 472, 639, 703, 736
Sau96I	GGNCC	2 cut(s)	246, 324
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	86, 560
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	9 cut(s)	21, 34, 110, 135, 211, 248, 286, 295, 604
SfaNI	GCATC	2 cut(s)	169, 704
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	109, 134
SmoI	CTYRAG	2 cut(s)	109, 134
Sse9I	AATT	2 cut(s)	197, 334
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	1 cut(s)	734
StyD4I	CCNGG	2 cut(s)	84, 558
TaaI	ACNGT	3 cut(s)	452, 500, 509
TaqI	TCGA	4 cut(s)	66, 110, 171, 255
TasI	AATT	2 cut(s)	197, 334
TauI	GCSGC	1 cut(s)	620
TfiI	GAWTC	2 cut(s)	92, 516
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	266, 455
TseI	GCWGC	4 cut(s)	16, 284, 421, 489
TspDTI	ATGAA	6 cut(s)	17, 210, 230, 327, 444, 762
TspGWI	ACGGA	3 cut(s)	259, 493, 726
TspRI	CASTG	2 cut(s)	266, 455
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.