Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Forward (+)

13906047 .. 13907898

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTTGAAATTGCTTTCCACACACTGCCAGTTTGTAACATTATACATCCTCAACCATTTCCGCATTCGGTAATCCAATTCTGGGAAGAATTGGTGGCATTTTTGGGCTGTTTTCGTCTCAGGAAAGGAAGCTTTTATGGACTGAAGGGTAAACAGCTCTCTCTTTTTACCATTGTTCTAATGTGCACCACCATTCTTATATGGGGATGGGAGAAAACCCTGATTCTTACTAACTTGGTACCGCCCCAAACCCGTTTGCAGTTGGGTTCAGAGATAAGGGATGATTATGTAGATAAATCTGTGCTATCAGAACAAGAAATAGATGTGGGCAATGGGGTAGCAACATTTGCCCAAAATGATACTGTAAAAGAAGAATTACGACTCGGAGCTCCACCAGGTTCTGAACAAGGCTCTGACGAAAGTGAAGAGATTAGTAATGATATAGCATCAAACCAGGTTGAGAAGAGTGGGGTTTTAACAAGTGGGTCAAAAGAAAGAGAAGAACATAAAGAAGTTCAGGAAGCGGAAATAGATGGCAAGGCAGTTGATGCAAGACAGAAAGAAAAAGTGGAGGAAAATAATTCAGATGTACAAAAGCAAAATGTGGAGCTAGGGACATCATTAGGTCTTGTATTTCTTTCTAAATCCTTGAAAAGCTTGATCACAAGAATCTACCTAGACCAATTTCTCCAGTCTGCGATTATGCGAAAGGAAAATGGGTTGTGGACCATAAGAAGCCGCTGTATTCTGGGCATGGCTGTAAGCAATGGCTGTCAAGTATGTGGTCTTGCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

266

Amino Acids

29.49

Weight (kDa)

5.1

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AciI	CCGC	4 cut(s)	62, 242, 524, 739
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	2 cut(s)	240, 591
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	8, 652
AjnI	CCWGG	2 cut(s)	394, 453
AluBI	AGCT	5 cut(s)	132, 157, 389, 610, 657
AluI	AGCT	5 cut(s)	132, 157, 389, 610, 657
Alw21I	GWGCWC	2 cut(s)	188, 391
Alw26I	GTCTC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	184
AlwNI	CAGNNNCTG	1 cut(s)	401
ApaLI	GTGCAC	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	726
AvaII	GGWCC	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	391
Bbv12I	GWGCWC	2 cut(s)	188, 391
BccI	CCATC	2 cut(s)	201, 527
BciT130I	CCWGG	2 cut(s)	396, 455
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	611, 677
BisI	GCNGC	1 cut(s)	739
BlsI	GCNGC	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	396, 455
Bme18I	GGWCC	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	726
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	396, 455
BmsI	GCATC	2 cut(s)	455, 538
BpmI	CTGGAG	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	29, 691
Bse3DI	GCAATG	2 cut(s)	337, 772
BseBI	CCWGG	2 cut(s)	396, 455
BseGI	GGATG	3 cut(s)	46, 212, 286
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	2 cut(s)	337, 772
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	2 cut(s)	29, 691
BseSI	GKGCMC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	188, 391
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	188, 391
Bsp1407I	TGTACA	1 cut(s)	589
Bsp143I	GATC	1 cut(s)	660
BspACI	CCGC	4 cut(s)	62, 242, 524, 739
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	337, 772
BsrGI	TGTACA	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	29, 691
BssMI	GATC	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	396, 455
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	2 cut(s)	420, 458
BstAPI	GCANNNNNTGC	2 cut(s)	347, 548
BstAUI	TGTACA	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	46, 212, 286
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 548
BstNI	CCWGG	2 cut(s)	396, 455
BstSCI	CCNGG	2 cut(s)	394, 453
BstSLI	GKGCMC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	46, 212, 286
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	726
CsiI	ACCWGGT	2 cut(s)	394, 453
Csp6I	GTAC	2 cut(s)	239, 590
CviAII	CATG	1 cut(s)	754
CviQI	GTAC	2 cut(s)	239, 590
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
Eam1104I	CTCTTC	2 cut(s)	420, 458
EarI	CTCTTC	2 cut(s)	420, 458
Ecl136II	GAGCTC	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	726
Eco53kI	GAGCTC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	394, 453
EcoT38I	GRGCYC	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	1 cut(s)	757
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	1 cut(s)	753
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	1 cut(s)	739
FokI	GGATG	3 cut(s)	33, 219, 293
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	739
FspBI	CTAG	2 cut(s)	611, 677
GluI	GCNGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	674
HapII	CCGG	1 cut(s)	792
Hin1II	CATG	1 cut(s)	757
HindIII	AAGCTT	2 cut(s)	130, 655
HinfI	GANTC	3 cut(s)	223, 381, 669
HpaII	CCGG	1 cut(s)	792
Hpy166II	GTNNAC	3 cut(s)	152, 186, 726
Hpy188I	TCNGA	6 cut(s)	271, 310, 386, 403, 415, 586
Hpy188III	TCNNGA	2 cut(s)	121, 518
Hpy8I	GTNNAC	3 cut(s)	152, 186, 726
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	186, 259, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 548
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	757
KpnI	GGTACC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	386, 394, 607
LweI	GCATC	2 cut(s)	455, 538
MabI	ACCWGGT	2 cut(s)	394, 453
MaeI	CTAG	2 cut(s)	611, 677
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	5 cut(s)	98, 383, 437, 475, 512
MhlI	GDGCHC	2 cut(s)	188, 391
MluCI	AATT	6 cut(s)	9, 77, 89, 374, 580, 683
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	2 cut(s)	60, 565
MseI	TTAA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	741
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	2 cut(s)	396, 455
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	396, 455
MwoI	GCNNNNNNNGC	2 cut(s)	347, 548
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	1 cut(s)	757
NlaIV	GGNNCC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	223, 669
PkrI	GCNGC	1 cut(s)	740
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	394, 453
PspGI	CCWGG	2 cut(s)	394, 453
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	240, 591
RsaNI	GTAC	2 cut(s)	239, 590
SacI	GAGCTC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	1 cut(s)	739
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	1 cut(s)	726
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	396, 455
SduI	GDGCHC	2 cut(s)	188, 391
SetI	ASST	9 cut(s)	134, 159, 391, 400, 459, 612, 628, 659, 678
SexAI	ACCWGGT	2 cut(s)	394, 453
SfaNI	GCATC	2 cut(s)	455, 538
SinI	GGWCC	1 cut(s)	726
Sse9I	AATT	6 cut(s)	9, 77, 89, 374, 580, 683
SsiI	CCGC	4 cut(s)	62, 242, 524, 739
SspMI	CTAG	2 cut(s)	611, 677
SstI	GAGCTC	1 cut(s)	391
StyD4I	CCNGG	2 cut(s)	394, 453
TaaI	ACNGT	1 cut(s)	364
TasI	AATT	6 cut(s)	9, 77, 89, 374, 580, 683
TatI	WGTACW	1 cut(s)	589
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	2 cut(s)	223, 669
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	1 cut(s)	30
TspRI	CASTG	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	726
XspI	CTAG	2 cut(s)	611, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.