pycom15g20290

trafficking protein particle complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011992
Physical Location & Seq
Forward (+)
14490570 .. 14495259
4690 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3582 bp
ATGGAAGACTACCCAGAAGAAATGAGGAATCCGCCGGTGAGCCTGGTGTCAGTGGTGGGATGCCCGGAGCTCCACACCTCAATCTCCGCCCACCTCCACTCTCTCTCCCCACCAATCAACACCCTCGCCTTGCCCGACCTCTCCAAGGCCTCACTCATCCTACCCCCAAAGCCCAACCCTACTTCCACTCCCGCCTCCGATTCCTCCGCCCCTCCACCCGCCGGAATAATAAAGCGAGATTGGCTCCTCAAGCACCGCACCAAAATCCCCTCCGTCGTCGCCGCCCTCCTCTCATCGGATCGGGTCACTGGCGACCCTGCTCAGTGGCTCCAACTCTGCTCCGACCTCGACGGCCTCAAAGCCCTCCTCCGCGGCAGAAACATCAAGCTGGTCGTCGTCGTCGTCTACTCCAATCCCAGCGATGAAATCTCGGAGGATCAGATGGTGGCTGTGCGGAAGCGCGCGGAGGTGGATGCCAAGTATCTTCTCACGTTTTACCGCAACCCAGATGGCGGCAGCGATGGTTCTCAGTTCAAAGAGTCTCTCCATAGACTGGGAAGCGTGTTTGCAGAGCTGGCCGGATTGTATTACAGAGACGAAGGACGAAGGGTTAGAGCTCGCATTGAGAGGAAGTCTTCCAATCCGGCTGACCTCAACATTCGCTATTCCTTCAAAGTTGCTGTGTATGCTGAGTTCAGAAGAGATTGGGTTGAAGCTTTGAGGTTTTATGAGGATGCTTATCACACCCTTCGGGAGTTAATTGCTGGGGCATCAAGTAGTGTGTCGGCGATTCAACGGTTAGTTGAGATAAAAACTATTGCGGAGCAATTGCATTTTAAAATTTCAACCTTGTTATTGCATGGTGGGAAGATTGTCGAAGCGGTTGTGTGGTTCCGCCAGCACAATGCTTCATACAGAAAGCTCATAGGAGCACCAGAAGCTATATTTCTTCACTGGGAGTGGATGGGTAGACAGTACTTAGTGTTTGCTGAATTGTTGGAGACGAGTTCAACAGCCATTCAAAGCATTTCACCTCTTCCCGTAGGCACAGCAGACAGACCTTTGACTGAGTGGGAACTTCAGCCGGCTCATTACTGTCAGTTAGCTGCTCATTACTTGAAGGAGAAGAGATCTTCTTTGGAATTTGCAGTTTCAATGTCAGAAGGTGATATCGATTGCAGTGCTGAATCTGTGGTACCTTCGTCTTATTTGGGTCAGTTTGCTCGCTTAATTGAGCAAGGAGATACATTTGTCATGCAACCCCTTACTGATGAAGAGTACATGCGTTATGCTATTTCTGAAGGAAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTTTACTAAAAAAATCTTGTGAATCATACAATAATCGCAAAGTCAGGAGAATGGGCTCATTTTGTGGATTCCAGATGGCTAGAGAATATTATGCTCTAGGTGATTTTAGCAATGCGAAACAGCTTTTTGATGACATTGCAAGTCTATACAGACAAGAGGGTTGGGTCATTTTGTTGTGGGAGGTATTGGGTTATCTGCGTGAATGTTCAAAGAGACGGAGTAAAGTTAAAGATTTTATGGAGTACTCCCTTGAAATGGCTGCGCTCCCTATATCAGCTGATACTGGTATCCAGTCTTTCCGATTTGAAGAAGGTCCTGCTGGGCCTGCGACTCTCCAACAAAGAGAAACAATACACAAAGAAGTTTTTGGTCTTGTTAGTGGAGAACTGAGATTGGCATCAACTGAAAATGGTAATGATCGATCGATGAAAGTATCTGGTGAAAGTCCACTTCACCTTGAAGTTGATCTTGTCAGTCCCCTCAGATTGGTACTTCTAGCTTCAGTTGCTTTTCATGAACAAATAATTAAGCCTGGCTCATCCACATTGGTTACGCTGTCGCTTCTGTCACAGTTACCCCTTAATTTCGAGATTGATCAGTTAGAAGTCCAGTTCAATCAGTCTGACTGTAACTTCATCATCATGAATGGCAAAAGGCCTCATGTAGTTGACGTGAGTGATGGCCAACCGGGTCGCCGAGTAGAGACTGCTCCTTCTTTGGCACTTTCTACAAATAAGTGGCTGCGATTGACATATAACATCAAATCTGATCAAAGCGGAAAGCTTGAATGCATATCTGTTATTGCAAAAATAGGACCCCACTTCACAATCTGTTGCAGAGCTGAAAGTCCTGCTTCAATGGATGAATTGCCTCTTTGGAAATTTGAAGATCGCGTGGTCACCTATCCAACCAAGGACCCTGCTCTGGCATTCTCTGGTCAGAAGGCTACTCAGGTTGAAGAGTCAGACCCAGAAGTGGATCTTAGTTTAGGGTCTGCCGGCCCTGCACTTACTGGAGAGAGCTTCATAGTACCTGTTACTGTTACATCCAAGGGCCATGATGTTAATTCTGGTGAGTTGAAAATCAATCTGGTGGATGTAAGGGGAGGTGGTTTGTTTAGTCCAAGGGACACGGATCTATCTACTGATAGTCATCATGTTGAACTTCTTGGTATTGCTGGACCGGACGGAGGAGATGAATCCCAACTGAACACTGATGAAATCAAGAAAATTCAACAGTCTTTTGGATTGGTTTCCGTTCCTGCTCTCAAAAGTGGAGACTCGTGGTCTTGCAAATTGGAAATCAAGTGGCACAGACCGAAACCAATTATGCTCTATGTATCTTTGGGTTATTCTCCAGATAACAATGAAAACACTCAAAAGGTAAATGTCCACAAGAGCTTGCAGATTGAAGGAAAGAATGCAATTACAATTAGCCATCGCTTTATGCTTCCCTTCCGGAGGTATCCATTGTTACTTTCTAGGATAAAGCCAGGTCCTGATTCTGACCTGTCAGCATCAATGCCTTTAAACGAAACAAGTGTACTAGTTGTTAGTGCTAAGAACTGCTCCGATGTGCCGCTTCAGTTGCTATCCTTCTCTCTTGAAGCAGATGATAATGATGGCACCGAAAGGTCATGTTCTGTGAAACATGGAGGTCAGGACCTATTAGACCCTGCCCTTCTAGTTCCAGGAGAAGAGTTCAAGAAGGTTTACACTGTCACTTCTGAGATGAATTCTTCAAAGCTCAGGTTAGGTAATGTGTGCCTTAGATGGAGAAGGGATTCCGGGACTGCAGTGGAACATGGTTCTACGGCTTCAGTTTTAACTACACACAGACTTCCAGATGTTAATCTAGAGTTGTCGCCTCTTGTTGTGAGTTTGGAATGTCCTCCTTATGCGATCCTCGGAGATCCTTTCACGTATTTTGTTAAAATACAGAACCAGACTGAATTGCTTCAGGAGGCCAAAATTTCATTAGCAGATGCACAAAGTTTTGTGTTAGCTGGGTCTCACAATGACAGCATCTTTATTCTTCCAAAATCTGAGCACATCGTCCGATACAAGCTTGTTCCACTTGCCTCAGGCGCACAACAGCTACCGAGATTCACGTTAACATCAGTTAGATATTCAACGGGGTTTCAGCCCTCAATTGCTGCATCGACAATTTTTGTATTTCCTTCTAAGCCTCATTTCAAGATGGCTACTGTGGGAGATGATAGGATGGAATCAGTGGTGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Foie-gras_1 Gryzun-like

Protein Analysis

1194

Amino Acids

132.38

Weight (kDa)

5.88

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Foie-gras_1 PF11817 266 - 533 2.1e-66 Foie gras liver health family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65950
fragaria_vesca FvH4_1g10000
malus_domestica MD15G1228100.v1.1
prunus_persica Prupe.7G186800_v2.0.a1 Prupe.7G186800_v2.0.a1
pyrus_communis pycom15g20290
rosa_chinensis RchiOBHm_Chr2g0096791
rosa_laevigata RLG00000016670 RLG00000023097
rosa_multiflora Rmu_co8505723.1_g000001 Rmu_sc0004938.1_g000018 Rmu_ssc0000215.1_g000031
rosa_roxburghii Rroxscaffold_2G00145310
rosa_rugosa Rorug02G0060900
rosa_samantha Rh2AG108200 Rh2BG110400 Rh2CG112300 Rh2DG111700
rosa_wichuraiana Rw2G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1195
AccB1I GGYRCC 2 cut(s) 1195, 2960
AccB7I CCANNNNNTGG 1 cut(s) 553
AccI GTMKAC 2 cut(s) 405, 970
AccII CGCG 4 cut(s) 372, 462, 464, 2229
AccIII TCCGGA 1 cut(s) 2793
AclWI GGATC 6 cut(s) 306, 444, 2322, 2478, 3232, 3242
AcoI YGGCCR 2 cut(s) 576, 2017
AcsI RAATTY 6 cut(s) 840, 1142, 2216, 2565, 3070, 3306
AcuI CTGAAG 6 cut(s) 1064, 1320, 1821, 2903, 3138, 3278
AfaI GTAC 7 cut(s) 977, 1197, 1280, 1580, 1827, 2367, 2880
AhdI GACNNNNNGTC 1 cut(s) 2620
AhlI ACTAGT 1 cut(s) 2881
AjiI CACGTC 1 cut(s) 2008
AjnI CCWGG 4 cut(s) 42, 1867, 2827, 3025
Alw21I GWGCWC 4 cut(s) 72, 619, 934, 3387
Alw26I GTCTC 7 cut(s) 546, 588, 995, 1543, 2033, 2607, 3351
AlwI GGATC 6 cut(s) 306, 444, 2322, 2478, 3232, 3242
AlwNI CAGNNNCTG 1 cut(s) 2834
Aor13HI TCCGGA 1 cut(s) 2793
AoxI GGCC 9 cut(s) 147, 352, 576, 1658, 1991, 2017, 2335, 2389, 3300
ApeKI GCWGC 5 cut(s) 516, 1106, 1595, 2077, 3491
ApoI RAATTY 6 cut(s) 840, 1142, 2216, 2565, 3070, 3306
Asp700I GAANNNNTTC 2 cut(s) 3118, 3291
Asp718I GGTACC 1 cut(s) 1195
AspLEI GCGC 4 cut(s) 462, 464, 1600, 3425
AspS9I GGNCC 9 cut(s) 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998
AsuC2I CCSGG 3 cut(s) 65, 2025, 3124
AsuHPI GGTGA 8 cut(s) 49, 1023, 1178, 1448, 1781, 1787, 2227, 2420
AvaII GGWCC 6 cut(s) 1649, 2150, 2251, 2516, 2831, 2998
AxyI CCTNAGG 1 cut(s) 3418
BaeI ACNNNNGTAYC 4 cut(s) 1187, 1220, 1236, 1269
BalI TGGCCA 1 cut(s) 2019
BanI GGYRCC 2 cut(s) 1195, 2960
BanII GRGCYC 3 cut(s) 72, 619, 1394
BauI CACGAG 1 cut(s) 2617
BbsI GAAGAC 2 cut(s) 12, 627
Bbv12I GWGCWC 4 cut(s) 72, 619, 934, 3387
BbvI GCAGC 5 cut(s) 528, 1093, 1582, 2064, 3478
BceAI ACGGC 2 cut(s) 367, 3165
BcgI CGANNNNNNTGC 2 cut(s) 1163, 1197
BciT130I CCWGG 4 cut(s) 44, 1869, 2829, 3027
BciVI GTATCC 2 cut(s) 1634, 2811
BclI TGATCA 2 cut(s) 1930, 2104
BcnI CCSGG 3 cut(s) 65, 2025, 3124
BcoDI GTCTC 7 cut(s) 546, 588, 995, 1543, 2033, 2607, 3351
BcuI ACTAGT 1 cut(s) 2881
BfaI CTAG 7 cut(s) 1416, 1433, 1832, 2817, 2882, 3020, 3191
BfmI CTRYAG 1 cut(s) 3129
BfuI GTATCC 2 cut(s) 1634, 2811
BglII AGATCT 1 cut(s) 1130
BisI GCNGC 9 cut(s) 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492
BlsI GCNGC 9 cut(s) 283, 374, 515, 518, 1108, 1597, 2079, 2916, 3493
BmcAI AGTACT 2 cut(s) 977, 1580
Bme1390I CCNGG 7 cut(s) 44, 65, 1869, 2025, 2829, 3027, 3124
Bme18I GGWCC 6 cut(s) 1649, 2150, 2251, 2516, 2831, 2998
BmeRI GACNNNNNGTC 1 cut(s) 2620
BmgBI CACGTC 1 cut(s) 2008
BmgT120I GGNCC 9 cut(s) 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998
BmiI GGNNCC 8 cut(s) 245, 329, 893, 1197, 1313, 2152, 2253, 2962
BmrFI CCNGG 7 cut(s) 44, 65, 1869, 2025, 2829, 3027, 3124
BmrI ACTGGG 2 cut(s) 563, 964
BmsI GCATC 9 cut(s) 50, 463, 724, 779, 1742, 2861, 3310, 3369, 3503
BmuI ACTGGG 2 cut(s) 563, 964
BpiI GAAGAC 2 cut(s) 12, 627
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 2 cut(s) 2370, 2676
Bpu10I CCTNAGC 1 cut(s) 3083
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 3 cut(s) 65, 2025, 3124
Bsa29I ATCGAT 3 cut(s) 1173, 1756, 1760
BsaAI YACGTR 1 cut(s) 3258
BsaBI GATNNNNATC 4 cut(s) 738, 1732, 2487, 3186
BsaI GGTCTC 1 cut(s) 3351
BsaJI CCNNGG 6 cut(s) 144, 370, 2247, 2385, 2459, 3241
BsaWI WCCGGW 2 cut(s) 2518, 2793
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 172, 202
Bse118I RCCGGY 3 cut(s) 34, 1084, 2333
Bse1I ACTGG 7 cut(s) 313, 558, 959, 1624, 1627, 1945, 2353
Bse21I CCTNAGG 1 cut(s) 3418
Bse3DI GCAATG 2 cut(s) 1453, 1470
Bse8I GATNNNNATC 4 cut(s) 738, 1732, 2487, 3186
BseAI TCCGGA 1 cut(s) 2793
BseBI CCWGG 4 cut(s) 44, 1869, 2829, 3027
BseCI ATCGAT 3 cut(s) 1173, 1756, 1760
BseDI CCNNGG 6 cut(s) 144, 370, 2247, 2385, 2459, 3241
BseJI GATNNNNATC 4 cut(s) 738, 1732, 2487, 3186
BseMI GCAATG 2 cut(s) 1453, 1470
BseNI ACTGG 7 cut(s) 313, 558, 959, 1624, 1627, 1945, 2353
BsePI GCGCGC 1 cut(s) 460
BseRI GAGGAG 4 cut(s) 236, 278, 356, 2541
BseXI GCAGC 5 cut(s) 528, 1093, 1582, 2064, 3478
BseYI CCCAGC 4 cut(s) 416, 764, 1655, 3341
BsgI GTGCAG 1 cut(s) 2325
Bsh1236I CGCG 4 cut(s) 372, 462, 464, 2229
Bsh1285I CGRYCG 1 cut(s) 1760
BshFI GGCC 9 cut(s) 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302
BshNI GGYRCC 2 cut(s) 1195, 2960
BshVI ATCGAT 3 cut(s) 1173, 1756, 1760
BsiEI CGRYCG 1 cut(s) 1760
BsiHKAI GWGCWC 4 cut(s) 72, 619, 934, 3387
BslFI GGGAC 3 cut(s) 1797, 2477, 3139
BsmAI GTCTC 7 cut(s) 546, 588, 995, 1543, 2033, 2607, 3351
BsmBI CGTCTC 3 cut(s) 588, 995, 1543
BsmFI GGGAC 3 cut(s) 1797, 2477, 3139
BsmI GAATGC 3 cut(s) 2129, 2264, 2761
BsnI GGCC 9 cut(s) 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302
Bso31I GGTCTC 1 cut(s) 3351
Bsp1286I GDGCHC 5 cut(s) 72, 619, 934, 1394, 3387
Bsp13I TCCGGA 1 cut(s) 2793
BspANI GGCC 9 cut(s) 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302
BspDI ATCGAT 3 cut(s) 1173, 1756, 1760
BspEI TCCGGA 1 cut(s) 2793
BspFNI CGCG 4 cut(s) 372, 462, 464, 2229
BspHI TCATGA 2 cut(s) 1849, 1977
BspLI GGNNCC 8 cut(s) 245, 329, 893, 1197, 1313, 2152, 2253, 2962
BspMAI CTGCAG 1 cut(s) 3133
BspPI GGATC 6 cut(s) 306, 444, 2322, 2478, 3232, 3242
BspT107I GGYRCC 2 cut(s) 1195, 2960
BspTNI GGTCTC 1 cut(s) 3351
BsrDI GCAATG 2 cut(s) 1453, 1470
BsrFI RCCGGY 3 cut(s) 34, 1084, 2333
BsrI ACTGG 7 cut(s) 313, 558, 959, 1624, 1627, 1945, 2353
BssAI RCCGGY 3 cut(s) 34, 1084, 2333
BssECI CCNNGG 6 cut(s) 144, 370, 2247, 2385, 2459, 3241
BssHII GCGCGC 1 cut(s) 460
BssSI CACGAG 1 cut(s) 2617
BssT1I CCWWGG 4 cut(s) 144, 2247, 2385, 2459
Bst2BI CACGAG 1 cut(s) 2617
Bst2UI CCWGG 4 cut(s) 44, 1869, 2829, 3027
Bst4CI ACNGT 9 cut(s) 798, 975, 1097, 1908, 1964, 2377, 2574, 3055, 3544
Bst6I CTCTTC 6 cut(s) 694, 1041, 1121, 1269, 2289, 3027
BstBAI YACGTR 1 cut(s) 3258
BstC8I GCNNGC 9 cut(s) 462, 576, 619, 899, 1086, 1225, 1662, 2335, 2738
BstDSI CCRYGG 1 cut(s) 370
BstEII GGTNACC 1 cut(s) 2233
BstENI CCTNNNNNAGG 2 cut(s) 143, 2794
BstFNI CGCG 4 cut(s) 372, 462, 464, 2229
BstHHI GCGC 4 cut(s) 462, 464, 1600, 3425
BstMAI GTCTC 7 cut(s) 546, 588, 995, 1543, 2033, 2607, 3351
BstMCI CGRYCG 1 cut(s) 1760
BstNI CCWGG 4 cut(s) 44, 1869, 2829, 3027
BstNSI RCATGY 1 cut(s) 1285
BstPI GGTNACC 1 cut(s) 2233
BstSCI CCNGG 7 cut(s) 42, 63, 1867, 2023, 2827, 3025, 3122
BstSFI CTRYAG 1 cut(s) 3129
BstUI CGCG 4 cut(s) 372, 462, 464, 2229
BstV1I GCAGC 5 cut(s) 528, 1093, 1582, 2064, 3478
BstV2I GAAGAC 2 cut(s) 12, 627
BstX2I RGATCY 4 cut(s) 1130, 2314, 2470, 3247
BstYI RGATCY 4 cut(s) 1130, 2314, 2470, 3247
Bsu15I ATCGAT 3 cut(s) 1173, 1756, 1760
Bsu36I CCTNAGG 1 cut(s) 3418
BsuI GTATCC 2 cut(s) 1634, 2811
BsuRI GGCC 9 cut(s) 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302
BsuTUI ATCGAT 3 cut(s) 1173, 1756, 1760
BtgI CCRYGG 1 cut(s) 370
BtgZI GCGATG 3 cut(s) 435, 534, 2759
BtrI CACGTC 1 cut(s) 2008
BtsI GCAGTG 2 cut(s) 1186, 3138
BtsIMutI CAGTG 9 cut(s) 57, 306, 329, 952, 1186, 2547, 3051, 3138, 3573
Cac8I GCNNGC 9 cut(s) 462, 576, 619, 899, 1086, 1225, 1662, 2335, 2738
CaiI CAGNNNCTG 1 cut(s) 2834
CciI TCATGA 2 cut(s) 1849, 1977
CfoI GCGC 4 cut(s) 462, 464, 1600, 3425
Cfr10I RCCGGY 3 cut(s) 34, 1084, 2333
Cfr13I GGNCC 9 cut(s) 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998
Cfr42I CCGCGG 1 cut(s) 373
ClaI ATCGAT 3 cut(s) 1173, 1756, 1760
Csp6I GTAC 7 cut(s) 976, 1196, 1279, 1579, 1826, 2366, 2879
CviQI GTAC 7 cut(s) 976, 1196, 1279, 1579, 1826, 2366, 2879
DraI TTTAAA 2 cut(s) 838, 2865
DriI GACNNNNNGTC 1 cut(s) 2620
EaeI YGGCCR 2 cut(s) 576, 2017
Eam1104I CTCTTC 6 cut(s) 694, 1041, 1121, 1269, 2289, 3027
Eam1105I GACNNNNNGTC 1 cut(s) 2620
EarI CTCTTC 6 cut(s) 694, 1041, 1121, 1269, 2289, 3027
EciI GGCGGA 4 cut(s) 21, 76, 196, 884
Ecl136II GAGCTC 2 cut(s) 70, 617
Eco130I CCWWGG 4 cut(s) 144, 2247, 2385, 2459
Eco147I AGGCCT 2 cut(s) 149, 1993
Eco24I GRGCYC 3 cut(s) 72, 619, 1394
Eco31I GGTCTC 1 cut(s) 3351
Eco32I GATATC 1 cut(s) 1171
Eco47I GGWCC 6 cut(s) 1649, 2150, 2251, 2516, 2831, 2998
Eco53kI GAGCTC 2 cut(s) 70, 617
Eco57I CTGAAG 6 cut(s) 1064, 1320, 1821, 2903, 3138, 3278
Eco81I CCTNAGG 1 cut(s) 3418
Eco91I GGTNACC 1 cut(s) 2233
EcoICRI GAGCTC 2 cut(s) 70, 617
EcoNI CCTNNNNNAGG 2 cut(s) 143, 2794
EcoO109I RGGNCCY 5 cut(s) 1649, 2150, 2251, 2831, 2998
EcoO65I GGTNACC 1 cut(s) 2233
EcoRI GAATTC 1 cut(s) 3070
EcoRII CCWGG 4 cut(s) 42, 1867, 2827, 3025
EcoRV GATATC 1 cut(s) 1171
EcoT14I CCWWGG 4 cut(s) 144, 2247, 2385, 2459
EcoT22I ATGCAT 1 cut(s) 2129
EcoT38I GRGCYC 3 cut(s) 72, 619, 1394
ErhI CCWWGG 4 cut(s) 144, 2247, 2385, 2459
Esp3I CGTCTC 3 cut(s) 588, 995, 1543
FalI AAGNNNNNCTT 6 cut(s) 1788, 1820, 2173, 2205, 2301, 2333
FaqI GGGAC 3 cut(s) 1797, 2477, 3139
FauI CCCGC 2 cut(s) 199, 226
FbaI TGATCA 2 cut(s) 1930, 2104
FblI GTMKAC 2 cut(s) 405, 970
Fnu4HI GCNGC 9 cut(s) 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492
FriOI GRGCYC 3 cut(s) 72, 619, 1394
Fsp4HI GCNGC 9 cut(s) 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492
FspBI CTAG 7 cut(s) 1416, 1433, 1832, 2817, 2882, 3020, 3191
GlaI GCGC 4 cut(s) 461, 463, 1599, 3424
GluI GCNGC 9 cut(s) 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492
GsaI CCCAGC 4 cut(s) 420, 768, 1659, 3345
GsuI CTGGAG 2 cut(s) 2370, 2676
HaeIII GGCC 9 cut(s) 149, 354, 578, 1660, 1993, 2019, 2337, 2391, 3302
HhaI GCGC 4 cut(s) 462, 464, 1600, 3425
Hin6I GCGC 4 cut(s) 460, 462, 1598, 3423
HinP1I GCGC 4 cut(s) 460, 462, 1598, 3423
HincII GTYRAC 2 cut(s) 2005, 3450
HindII GTYRAC 2 cut(s) 2005, 3450
HindIII AAGCTT 3 cut(s) 714, 2117, 3401
HpaI GTTAAC 1 cut(s) 3450
HphI GGTGA 8 cut(s) 49, 1023, 1178, 1448, 1781, 1787, 2227, 2420
Hpy166II GTNNAC 8 cut(s) 406, 971, 1784, 2005, 2728, 2879, 3049, 3450
Hpy8I GTNNAC 8 cut(s) 406, 971, 1784, 2005, 2728, 2879, 3049, 3450
Hpy99I CGWCG 6 cut(s) 278, 281, 353, 398, 401, 404
HpyCH4III ACNGT 9 cut(s) 798, 975, 1097, 1908, 1964, 2377, 2574, 3055, 3544
HpyCH4IV ACGT 4 cut(s) 491, 2007, 3257, 3446
HpySE526I ACGT 4 cut(s) 491, 2007, 3257, 3446
HspAI GCGC 4 cut(s) 460, 462, 1598, 3423
Kpn2I TCCGGA 1 cut(s) 2793
KpnI GGTACC 1 cut(s) 1199
KroI GCCGGC 2 cut(s) 1084, 2333
KroNI GCCGGC 2 cut(s) 1086, 2335
Ksp22I TGATCA 2 cut(s) 1930, 2104
KspAI GTTAAC 1 cut(s) 3450
KspI CCGCGG 1 cut(s) 373
Lsp1109I GCAGC 5 cut(s) 528, 1093, 1582, 2064, 3478
LweI GCATC 9 cut(s) 50, 463, 724, 779, 1742, 2861, 3310, 3369, 3503
MaeI CTAG 7 cut(s) 1416, 1433, 1832, 2817, 2882, 3020, 3191
MaeII ACGT 4 cut(s) 491, 2007, 3257, 3446
MfeI CAATTG 2 cut(s) 827, 3486
MflI RGATCY 4 cut(s) 1130, 2314, 2470, 3247
MhlI GDGCHC 5 cut(s) 72, 619, 934, 1394, 3387
MlsI TGGCCA 1 cut(s) 2019
MluNI TGGCCA 1 cut(s) 2019
MlyI GAGTC 4 cut(s) 548, 1660, 2306, 2609
MmeI TCCRAC 5 cut(s) 355, 366, 978, 1696, 2267
Mox20I TGGCCA 1 cut(s) 2019
Mph1103I ATGCAT 1 cut(s) 2129
MroI TCCGGA 1 cut(s) 2793
MroNI GCCGGC 2 cut(s) 1084, 2333
MroXI GAANNNNTTC 2 cut(s) 3118, 3291
MscI TGGCCA 1 cut(s) 2019
MslI CAYNNNNRTG 1 cut(s) 1976
Msp20I TGGCCA 1 cut(s) 2019
MspA1I CMGCKG 2 cut(s) 372, 1613
MspR9I CCNGG 7 cut(s) 44, 65, 1869, 2025, 2829, 3027, 3124
MunI CAATTG 2 cut(s) 827, 3486
Mva1269I GAATGC 3 cut(s) 2129, 2264, 2761
MvaI CCWGG 4 cut(s) 44, 1869, 2829, 3027
MvnI CGCG 4 cut(s) 372, 462, 464, 2229
NaeI GCCGGC 2 cut(s) 1086, 2335
NciI CCSGG 3 cut(s) 65, 2025, 3124
NgoMIV GCCGGC 2 cut(s) 1084, 2333
NlaIV GGNNCC 8 cut(s) 245, 329, 893, 1197, 1313, 2152, 2253, 2962
NmeAIII GCCGAG 1 cut(s) 2057
NmuCI GTSAC 4 cut(s) 304, 1902, 2233, 3055
NsiI ATGCAT 1 cut(s) 2129
NspI RCATGY 1 cut(s) 1285
PagI TCATGA 2 cut(s) 1849, 1977
PauI GCGCGC 1 cut(s) 460
PceI AGGCCT 2 cut(s) 149, 1993
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 399
PctI GAATGC 3 cut(s) 2129, 2264, 2761
PdiI GCCGGC 2 cut(s) 1086, 2335
PdmI GAANNNNTTC 2 cut(s) 3118, 3291
PflMI CCANNNNNTGG 1 cut(s) 553
PfoI TCCNGGA 2 cut(s) 3025, 3122
PkrI GCNGC 9 cut(s) 283, 374, 515, 518, 1108, 1597, 2079, 2916, 3493
Ple19I CGATCG 1 cut(s) 1760
PleI GAGTC 4 cut(s) 547, 1660, 2305, 2609
PpsI GAGTC 4 cut(s) 547, 1660, 2305, 2609
Ppu21I YACGTR 1 cut(s) 3258
PpuMI RGGWCCY 5 cut(s) 1649, 2150, 2251, 2831, 2998
Psp124BI GAGCTC 2 cut(s) 72, 619
Psp5II RGGWCCY 5 cut(s) 1649, 2150, 2251, 2831, 2998
Psp6I CCWGG 4 cut(s) 42, 1867, 2827, 3025
PspEI GGTNACC 1 cut(s) 2233
PspFI CCCAGC 4 cut(s) 416, 764, 1655, 3341
PspGI CCWGG 4 cut(s) 42, 1867, 2827, 3025
PspN4I GGNNCC 8 cut(s) 245, 329, 893, 1197, 1313, 2152, 2253, 2962
PspPI GGNCC 9 cut(s) 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998
PspPPI RGGWCCY 5 cut(s) 1649, 2150, 2251, 2831, 2998
PsrI GAACNNNNNNTAC 2 cut(s) 677, 709
PstI CTGCAG 1 cut(s) 3133
PstNI CAGNNNCTG 1 cut(s) 2834
PsuI RGATCY 4 cut(s) 1130, 2314, 2470, 3247
PteI GCGCGC 1 cut(s) 460
PvuI CGATCG 1 cut(s) 1760
PvuII CAGCTG 1 cut(s) 1613
RsaI GTAC 7 cut(s) 977, 1197, 1280, 1580, 1827, 2367, 2880
RsaNI GTAC 7 cut(s) 976, 1196, 1279, 1579, 1826, 2366, 2879
RseI CAYNNNNRTG 1 cut(s) 1976
SacI GAGCTC 2 cut(s) 72, 619
SacII CCGCGG 1 cut(s) 373
SatI GCNGC 9 cut(s) 282, 373, 514, 517, 1107, 1596, 2078, 2915, 3492
Sau96I GGNCC 9 cut(s) 1649, 1658, 2150, 2251, 2336, 2389, 2516, 2831, 2998
ScaI AGTACT 2 cut(s) 977, 1580
SchI GAGTC 4 cut(s) 548, 1660, 2306, 2609
ScrFI CCNGG 7 cut(s) 44, 65, 1869, 2025, 2829, 3027, 3124
SduI GDGCHC 5 cut(s) 72, 619, 934, 1394, 3387
SfaNI GCATC 9 cut(s) 50, 463, 724, 779, 1742, 2861, 3310, 3369, 3503
SfcI CTRYAG 1 cut(s) 3129
Sfr303I CCGCGG 1 cut(s) 373
SgrAI CRCCGGYG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 6 cut(s) 1649, 2150, 2251, 2516, 2831, 2998
SmiMI CAYNNNNRTG 1 cut(s) 1976
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SpeI ACTAGT 1 cut(s) 2881
SseBI AGGCCT 2 cut(s) 149, 1993
SspI AATATT 1 cut(s) 1424
SspMI CTAG 7 cut(s) 1416, 1433, 1832, 2817, 2882, 3020, 3191
SstI GAGCTC 2 cut(s) 72, 619
StuI AGGCCT 2 cut(s) 149, 1993
StyD4I CCNGG 7 cut(s) 42, 63, 1867, 2023, 2827, 3025, 3122
StyI CCWWGG 4 cut(s) 144, 2247, 2385, 2459
TaaI ACNGT 9 cut(s) 798, 975, 1097, 1908, 1964, 2377, 2574, 3055, 3544
TaiI ACGT 4 cut(s) 494, 2010, 3260, 3449
TaqI TCGA 7 cut(s) 348, 876, 1173, 1756, 1760, 1923, 3497
TaqII GACCGA 1 cut(s) 2668
TatI WGTACW 4 cut(s) 975, 1278, 1578, 2878
TauI GCSGC 4 cut(s) 284, 375, 516, 2917
TscAI CASTG 9 cut(s) 57, 313, 329, 959, 1186, 2554, 3058, 3138, 3573
TseFI GTSAC 4 cut(s) 304, 1902, 2233, 3055
TseI GCWGC 5 cut(s) 516, 1106, 1595, 2077, 3491
Tsp45I GTSAC 4 cut(s) 304, 1902, 2233, 3055
TspGWI ACGGA 5 cut(s) 262, 1567, 2483, 2538, 2581
TspRI CASTG 9 cut(s) 57, 313, 329, 959, 1186, 2554, 3058, 3138, 3573
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 6 cut(s) 1649, 2150, 2251, 2516, 2831, 2998
XagI CCTNNNNNAGG 2 cut(s) 143, 2794
XapI RAATTY 6 cut(s) 840, 1142, 2216, 2565, 3070, 3306
XbaI TCTAGA 1 cut(s) 3190
XceI RCATGY 1 cut(s) 1285
XmiI GTMKAC 2 cut(s) 405, 970
XmnI GAANNNNTTC 2 cut(s) 3118, 3291
XspI CTAG 7 cut(s) 1416, 1433, 1832, 2817, 2882, 3020, 3191
ZrmI AGTACT 2 cut(s) 977, 1580
Zsp2I ATGCAT 1 cut(s) 2129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.