Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Reverse (-)

16806876 .. 16807776

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAATGATTTGATGACCAAATCGTTCTTAAGTTATGTGGAACTGAAGAAACAGGCGCAGAAGGACCTCGAAGTGGATCTTGATGTCGAAGCAGGCGCAGGCAAACTCAACCCGTCCGGCCAAGAAAACCTCTCTCAGTTCTTCCAAGAAGTCGGAGCAATCAAGGCCGACATGGAAGAGATCAACAATCTCTTGCACGATCTCCAGTGCCTGAACGAAGAGGCAAAGTCCACACACAGCGCCAAGATTCTGCGCGGGCTTAGAGACCGGATGGAGTCTGACATGGTTACAGTGCTTCGGAAAGCGAAGATTATCAAGGCGAGGCTCGAAGCGCTTGATCAGTCTAATGCGATCAACAGAAAAAAGTCCAATGAGTACAAGGAAGGAAGCACTGCGGATCGAACTAGAATGTCCATCACCGGTGGCTTGAGATTTCGGATCATAAGGAACGATCTCAAGAGGAGATACTACAGCGCAACGGGTGATTTGCCATCCGATGAGATGACTGAAAAGATTATTTCTGGAAGCTTGAAAGTTGAGTTGTTCGAAGGGAAGACAGAACTGGATATGGGGAACAAGGTCCGACACGAGGCGGTGATGGATATCCAAAGAAGTCTGACTAAGCTTCATCAGGTGTTTCTCGACATGGCTGTTTTGGTTGAGGCACAAGGGAAAGACATTGAAAATATCGAAGAGAATGTGGCGAATGCTGGTTATTTCATCAGTGGAGGCACAAATAGTCTTCATTATGCCAGCCAGATGAAGAAGAACAAGAAGTGGGTTTACTGGGTGTGGGCTGTGGGACTGATTATACTTATGGTTTGCATTATTTCGATGTTCGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

283

Amino Acids

31.92

Weight (kDa)

6.98

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	42 - 181	2.2e-25	Syntaxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	255, 395, 593
AclWI	GGATC	3 cut(s)	84, 405, 446
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	377
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	73, 589
AflII	CTTAAG	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	532, 683
AluBI	AGCT	2 cut(s)	528, 625
AluI	AGCT	2 cut(s)	528, 625
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	84, 405, 446
AlwNI	CAGNNNCTG	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	2 cut(s)	118, 165
AsiGI	ACCGGT	1 cut(s)	419
AspLEI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
AspS9I	GGNCC	2 cut(s)	64, 580
AsuHPI	GGTGA	3 cut(s)	409, 494, 607
AsuII	TTCGAA	1 cut(s)	546
AvaII	GGWCC	2 cut(s)	64, 580
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
BauI	CACGAG	1 cut(s)	587
BbsI	GAAGAC	2 cut(s)	560, 734
BccI	CCATC	4 cut(s)	265, 422, 499, 592
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	469
BfoI	RGCGCY	2 cut(s)	243, 335
BfrI	CTTAAG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	64, 580
BmgT120I	GGNCC	2 cut(s)	64, 580
BmrI	ACTGGG	1 cut(s)	796
BmuI	ACTGGG	1 cut(s)	796
BpiI	GAAGAC	2 cut(s)	560, 734
BpmI	CTGGAG	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	2 cut(s)	440, 448
BsaBI	GATNNNNATC	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	267, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 589
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	3 cut(s)	205, 567, 791
Bse8I	GATNNNNATC	1 cut(s)	602
BseGI	GGATG	2 cut(s)	276, 491
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	2 cut(s)	73, 589
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	3 cut(s)	205, 567, 791
BseRI	GAGGAG	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	120, 167
BshTI	ACCGGT	1 cut(s)	419
BsiSI	CCGG	3 cut(s)	117, 268, 420
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	2 cut(s)	73, 589
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	816
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	120, 167
Bso31I	GGTCTC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	546
Bsp143I	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
BspACI	CCGC	3 cut(s)	255, 395, 593
BspANI	GGCC	2 cut(s)	120, 167
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	255
BspHI	TCATGA	1 cut(s)	845
BspPI	GGATC	3 cut(s)	84, 405, 446
BspT104I	TTCGAA	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	205, 567, 791
BssAI	RCCGGY	1 cut(s)	419
BssMI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
BssSI	CACGAG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	3 cut(s)	171, 213, 687
BstAFI	CTTAAG	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	4 cut(s)	94, 100, 257, 754
BstDEI	CTNAG	3 cut(s)	135, 260, 621
BstF5I	GGATG	2 cut(s)	276, 491
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	2 cut(s)	243, 335
BstHHI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
BstKTI	GATC	8 cut(s)	79, 183, 202, 340, 354, 400, 441, 454
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 331
BstSFI	CTRYAG	1 cut(s)	469
BstUI	CGCG	1 cut(s)	255
BstV2I	GAAGAC	2 cut(s)	560, 734
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	120, 167
BtsCI	GGATG	2 cut(s)	276, 491
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	4 cut(s)	212, 297, 390, 730
Cac8I	GCNNGC	4 cut(s)	94, 100, 257, 754
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	845
CfoI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	64, 580
Csp6I	GTAC	1 cut(s)	376
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	4 cut(s)	172, 283, 646, 846
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	135, 260, 621
DpnI	GATC	8 cut(s)	78, 182, 201, 339, 353, 399, 440, 453
DpnII	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	3 cut(s)	171, 213, 687
EarI	CTCTTC	3 cut(s)	171, 213, 687
Eco31I	GGTCTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	2 cut(s)	64, 580
Eco47III	AGCGCT	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	604
FaeI	CATG	4 cut(s)	175, 286, 649, 849
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	4 cut(s)	171, 282, 645, 845
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	337
FokI	GGATG	2 cut(s)	283, 478
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	6 cut(s)	57, 97, 241, 254, 333, 475
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	2 cut(s)	243, 335
HaeIII	GGCC	2 cut(s)	120, 167
HapII	CCGG	3 cut(s)	117, 268, 420
HhaI	GCGC	6 cut(s)	58, 98, 242, 255, 334, 476
Hin1II	CATG	4 cut(s)	175, 286, 649, 849
Hin6I	GCGC	6 cut(s)	56, 96, 240, 253, 332, 474
HinP1I	GCGC	6 cut(s)	56, 96, 240, 253, 332, 474
HindIII	AAGCTT	2 cut(s)	526, 623
HinfI	GANTC	2 cut(s)	247, 275
HpaII	CCGG	3 cut(s)	117, 268, 420
HphI	GGTGA	3 cut(s)	409, 494, 607
Hpy166II	GTNNAC	2 cut(s)	231, 784
Hpy188I	TCNGA	7 cut(s)	155, 280, 300, 438, 496, 584, 618
Hpy188III	TCNNGA	5 cut(s)	80, 457, 522, 641, 846
Hpy8I	GTNNAC	2 cut(s)	231, 784
HpyAV	CCTTC	3 cut(s)	55, 377, 542
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	196, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 331
HpyF3I	CTNAG	3 cut(s)	135, 260, 621
Hsp92II	CATG	4 cut(s)	175, 286, 649, 849
HspAI	GCGC	6 cut(s)	56, 96, 240, 253, 332, 474
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
LmnI	GCTCC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	8 cut(s)	78, 182, 201, 339, 353, 399, 440, 453
MboI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
MflI	RGATCY	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	133, 607
MnlI	CCTC	8 cut(s)	77, 140, 214, 315, 453, 583, 655, 722
MseI	TTAA	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	3 cut(s)	117, 268, 420
Mva1269I	GAATGC	1 cut(s)	712
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	164, 331
NdeII	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
NlaIII	CATG	4 cut(s)	175, 286, 649, 849
NspV	TTCGAA	1 cut(s)	546
PagI	TCATGA	1 cut(s)	845
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	247
PinAI	ACCGGT	1 cut(s)	419
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	64, 580
PspPPI	RGGWCCY	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	8 cut(s)	76, 180, 199, 337, 351, 397, 438, 451
Sau96I	GGNCC	2 cut(s)	64, 580
SchI	GAGTC	1 cut(s)	284
SetI	ASST	6 cut(s)	69, 132, 530, 582, 627, 636
SfcI	CTRYAG	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	546
SgrAI	CRCCGGYG	1 cut(s)	419
SinI	GGWCC	2 cut(s)	64, 580
SmlI	CTYRAG	3 cut(s)	28, 427, 455
SmoI	CTYRAG	3 cut(s)	28, 427, 455
SsiI	CCGC	3 cut(s)	255, 395, 593
SspMI	CTAG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	8 cut(s)	69, 87, 327, 400, 546, 642, 690, 833
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	4 cut(s)	212, 297, 397, 730
TspDTI	ATGAA	5 cut(s)	17, 617, 709, 734, 776
TspRI	CASTG	4 cut(s)	212, 297, 397, 730
Vha464I	CTTAAG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	64, 580
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.