pycom15g29550

Regulation of nuclear pre-mRNA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010009
Physical Location & Seq
Reverse (-)
26463517 .. 26468358
4842 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1557 bp
ATGAATAGTGTATTCACTGAGCAGATACTTGCAGACAAGCTCTCCAAGGTCAACAGCACCCAGCAATGCATTGAAACTTTGTCACATTGGTGTATATTTCACCGGAGCAAAGCGGAACTGGTTGTCGCAACATGGGATAAACAATTCCGTAGTGCACAGATGGTTCAGAAAGTTCCTCTCTTGTATCTTGCAAATGACATCCTGCAGAACAGTAAGCGGAAAGGAAATGAATTTGTTACTGAGTTTTGGAAGGTTCTTCCAGCAGCTCTCAAAGTTGTTCACGACGAAGGCGATAATCATGGAAAGAATGTTGTATCTAGATTGGTTGGTATTTGGGAAGAGAGACGAGTATTTGGGTCTCGTGCAAGGAGCCTAAAAGAAGTAATGCTTGGGGAAGAAGTGCCTCCACCGTTGGAATTCAGTGGCAAAAAGCGCCCTCGTTCAGTCAGAATTGTAAAAAGAGATTCACGCTCTATCAGAACGAAACTTTCTATTGGAGGTCCAGCTGAGAAGATTGTATCCGCATTTCACTTGGTGATCGATCATCCCACTGAAGATGCTGAGATGAGTAAATGCAAGTCTGCAGCTCACCGTGTAAGGAAGTTGGAGAAAGATGTTGACATTGCCTGTACTAATGCTAAAGATCCAAAGCGGGAAACTTTAGCGAAAGAACTAGAGGAGGAGGAAAATATTTTGAAGCAGTGTATCAATAAACTTAAATCAGTTGAAACCAGTAGAGTAGCACTTTTATCTCAATTAAAAGAAGCTCTGCATGATCAGGAATCTGAACTGGAGAATATTCGAACTCATATGCAGGTAGCACAGGCACAGGTAGAAGAAGCCACCAACATGCGGAAGCGGCTCAATGATGATGATTATCTGTTTAAACCATCAAGTGCGACCAGTCCATTGACTGATGCAAATTCTAAAGGCGGACAAACACCTAGGAAATCAGCAGCAGCCATTGCAGCTTTGGTTGCTGACAAGCTTGCTGCTTCTAGTTCTTCTCAATCGATTATGACTTCAGTTCTTTCAACATTTGCTGCTGAAGAAGCGAAGAATGCTGGTTTGACAAAGCCCTCCACGTCTATGCCCCAAAGTTCGGGCACTGAATCAATATCCAAACCTGAGAGGTCCATGCCCGTATCAGATGCCAATGTTTTTATGTCATCACAAGCGCCTTCTGTGCAGCCAAGCCATTCGTACCAATCAGCATTGGTTCCCCAACCGCAGAATCAAGCCCCAACCTCTCAAGGTCAATTTCACATGCTTCCAAACCCACCCTCCCAACAATATTTACAGCCATCAGGAGGGGGCATGAGCCCATATGTTTACGGTAGCATTCCACCTTTGCCTCTAGGGCCACCACCTCGCCCACCTCATATGGTGACATCAATGGTGCCTTTGGCTCAGCAGCCATTGCAAATGAATCAGCAACCTGTACAAATTAGCCAGCAGCAACCAATACCCTCAACTCAGCAGCCTCCTCCCGCTCCTAGTTTCCGGCCACTTCAGCCACCCGGAATGGTGTATTATGCTCATCATCATTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind

Protein Analysis

519

Amino Acids

57.21

Weight (kDa)

9.13

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CID PF04818 9 - 120 8.1e-35 CID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 1399
AccBSI CCGCTC 1 cut(s) 1493
AciI CCGC 9 cut(s) 113, 217, 522, 652, 853, 859, 933, 1229, 1491
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 1505
AcsI RAATTY 3 cut(s) 230, 416, 922
AcuI CTGAAG 4 cut(s) 573, 1008, 1068, 1496
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 3 cut(s) 631, 1205, 1443
AfiI CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
AgsI TTSAA 4 cut(s) 74, 697, 728, 1035
AjiI CACGTC 1 cut(s) 1086
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AleI CACNNNNGTG 1 cut(s) 88
AluBI AGCT 7 cut(s) 40, 266, 506, 587, 767, 971, 988
AluI AGCT 7 cut(s) 40, 266, 506, 587, 767, 971, 988
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 2 cut(s) 337, 363
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 1 cut(s) 638
AoxI GGCC 2 cut(s) 1361, 1505
ApaLI GTGCAC 1 cut(s) 153
ApoI RAATTY 3 cut(s) 230, 416, 922
AspA2I CCTAGG 1 cut(s) 944
AspLEI GCGC 2 cut(s) 435, 1180
AspS9I GGNCC 3 cut(s) 500, 1134, 1361
AsuC2I CCSGG 1 cut(s) 1521
AsuHPI GGTGA 4 cut(s) 92, 547, 581, 1399
AsuII TTCGAA 1 cut(s) 802
AvaII GGWCC 2 cut(s) 500, 1134
AvrII CCTAGG 1 cut(s) 944
BaeGI GKGCMC 2 cut(s) 157, 1109
BanI GGYRCC 1 cut(s) 1399
BanII GRGCYC 1 cut(s) 1325
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 157
BccI CCATC 3 cut(s) 154, 898, 1312
BciVI GTATCC 1 cut(s) 529
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 1521
BcoDI GTCTC 2 cut(s) 337, 363
BfaI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
BfmI CTRYAG 2 cut(s) 203, 582
BfoI RGCGCY 2 cut(s) 436, 1181
BfuAI ACCTGC 1 cut(s) 805
BfuI GTATCC 1 cut(s) 529
BglI GCCNNNNNGGC 1 cut(s) 1360
BlnI CCTAGG 1 cut(s) 944
BlpI GCTNAGC 1 cut(s) 1410
Bme1390I CCNGG 1 cut(s) 1521
Bme18I GGWCC 2 cut(s) 500, 1134
BmgBI CACGTC 1 cut(s) 1086
BmgT120I GGNCC 3 cut(s) 500, 1134, 1361
BmiI GGNNCC 3 cut(s) 371, 1221, 1401
BmrFI CCNGG 1 cut(s) 1521
BmsI GCATC 3 cut(s) 547, 907, 1141
BpmI CTGGAG 1 cut(s) 812
Bpu1102I GCTNAGC 1 cut(s) 1410
Bpu14I TTCGAA 1 cut(s) 802
BpuEI CTTGAG 1 cut(s) 1236
BpuMI CCSGG 1 cut(s) 1521
Bsa29I ATCGAT 2 cut(s) 540, 1013
BsaBI GATNNNNATC 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 45, 944
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 1268, 1298
Bsc4I CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
Bse1I ACTGG 4 cut(s) 123, 732, 795, 903
Bse3DI GCAATG 4 cut(s) 71, 621, 963, 1418
Bse8I GATNNNNATC 1 cut(s) 876
BseCI ATCGAT 2 cut(s) 540, 1013
BseDI CCNNGG 2 cut(s) 45, 944
BseGI GGATG 2 cut(s) 198, 544
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
BseMI GCAATG 4 cut(s) 71, 621, 963, 1418
BseMII CTCAG 7 cut(s) 9, 231, 498, 552, 1119, 1424, 1490
BseNI ACTGG 4 cut(s) 123, 732, 795, 903
BseRI GAGGAG 3 cut(s) 692, 695, 1476
BseSI GKGCMC 2 cut(s) 157, 1109
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 1208
BshFI GGCC 2 cut(s) 1363, 1507
BshNI GGYRCC 1 cut(s) 1399
BshVI ATCGAT 2 cut(s) 540, 1013
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 103, 1504, 1521
BslI CCNNNNNNNGG 3 cut(s) 852, 1102, 1310
BsmAI GTCTC 2 cut(s) 337, 363
BsmBI CGTCTC 1 cut(s) 337
BsmI GAATGC 2 cut(s) 1066, 1341
BsnI GGCC 2 cut(s) 1363, 1507
Bso31I GGTCTC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 802
Bsp1286I GDGCHC 3 cut(s) 157, 1109, 1325
Bsp1407I TGTACA 1 cut(s) 1441
Bsp143I GATC 4 cut(s) 537, 541, 643, 775
Bsp1720I GCTNAGC 1 cut(s) 1410
BspACI CCGC 9 cut(s) 113, 217, 522, 652, 853, 859, 933, 1229, 1491
BspANI GGCC 2 cut(s) 1363, 1507
BspCNI CTCAG 7 cut(s) 10, 232, 499, 553, 1120, 1423, 1489
BspDI ATCGAT 2 cut(s) 540, 1013
BspLI GGNNCC 3 cut(s) 371, 1221, 1401
BspMAI CTGCAG 2 cut(s) 207, 586
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 1 cut(s) 638
BspT104I TTCGAA 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 1399
BspTNI GGTCTC 1 cut(s) 363
BsrBI CCGCTC 1 cut(s) 1493
BsrDI GCAATG 4 cut(s) 71, 621, 963, 1418
BsrGI TGTACA 1 cut(s) 1441
BsrI ACTGG 4 cut(s) 123, 732, 795, 903
BssECI CCNNGG 2 cut(s) 45, 944
BssMI GATC 4 cut(s) 537, 541, 643, 775
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 45, 944
Bst2BI CACGAG 1 cut(s) 360
Bst4CI ACNGT 4 cut(s) 212, 411, 593, 1337
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 2 cut(s) 965, 1420
BstAUI TGTACA 1 cut(s) 1441
BstBI TTCGAA 1 cut(s) 802
BstC8I GCNNGC 2 cut(s) 990, 1454
BstDEI CTNAG 8 cut(s) 18, 240, 507, 561, 1128, 1410, 1476, 1551
BstF5I GGATG 2 cut(s) 198, 544
BstH2I RGCGCY 2 cut(s) 436, 1181
BstHHI GCGC 2 cut(s) 435, 1180
BstKTI GATC 4 cut(s) 540, 544, 646, 778
BstMAI GTCTC 2 cut(s) 337, 363
BstMBI GATC 4 cut(s) 537, 541, 643, 775
BstNSI RCATGY 2 cut(s) 853, 1270
BstSCI CCNGG 1 cut(s) 1519
BstSFI CTRYAG 2 cut(s) 203, 582
BstSLI GKGCMC 2 cut(s) 157, 1109
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
Bsu15I ATCGAT 2 cut(s) 540, 1013
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 2 cut(s) 1363, 1507
BsuTUI ATCGAT 2 cut(s) 540, 1013
BtrI CACGTC 1 cut(s) 1086
BtsCI GGATG 2 cut(s) 198, 544
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 5 cut(s) 15, 427, 549, 707, 1107
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 990, 1454
CfoI GCGC 2 cut(s) 435, 1180
Cfr13I GGNCC 3 cut(s) 500, 1134, 1361
ClaI ATCGAT 2 cut(s) 540, 1013
Csp6I GTAC 3 cut(s) 630, 1204, 1442
CviAII CATG 7 cut(s) 132, 299, 773, 850, 1138, 1267, 1318
CviQI GTAC 3 cut(s) 630, 1204, 1442
DdeI CTNAG 8 cut(s) 18, 240, 507, 561, 1128, 1410, 1476, 1551
DpnI GATC 4 cut(s) 539, 543, 645, 777
DpnII GATC 4 cut(s) 537, 541, 643, 775
DraI TTTAAA 1 cut(s) 886
DraIII CACNNNGTG 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 1505
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 948
Eco130I CCWWGG 2 cut(s) 45, 944
Eco24I GRGCYC 1 cut(s) 1325
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 500, 1134
Eco57I CTGAAG 4 cut(s) 573, 1008, 1068, 1496
EcoRI GAATTC 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 45, 944
EcoT22I ATGCAT 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 1325
ErhI CCWWGG 2 cut(s) 45, 944
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 7 cut(s) 131, 298, 772, 849, 1137, 1266, 1317
FauI CCCGC 2 cut(s) 645, 1498
FauNDI CATATG 3 cut(s) 810, 1327, 1383
FbaI TGATCA 1 cut(s) 775
FokI GGATG 2 cut(s) 185, 531
FriOI GRGCYC 1 cut(s) 1325
FspBI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
GlaI GCGC 2 cut(s) 434, 1179
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 812
HaeII RGCGCY 2 cut(s) 436, 1181
HaeIII GGCC 2 cut(s) 1363, 1507
HapII CCGG 3 cut(s) 103, 1504, 1521
HhaI GCGC 2 cut(s) 435, 1180
Hin1II CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
Hin6I GCGC 2 cut(s) 433, 1178
HinP1I GCGC 2 cut(s) 433, 1178
HincII GTYRAC 2 cut(s) 52, 619
HindII GTYRAC 2 cut(s) 52, 619
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 5 cut(s) 464, 782, 1112, 1234, 1429
HpaII CCGG 3 cut(s) 103, 1504, 1521
HphI GGTGA 4 cut(s) 92, 547, 581, 1399
Hpy166II GTNNAC 5 cut(s) 52, 155, 280, 619, 1333
Hpy188I TCNGA 5 cut(s) 168, 449, 479, 787, 1150
Hpy188III TCNNGA 4 cut(s) 281, 318, 779, 1308
Hpy8I GTNNAC 5 cut(s) 52, 155, 280, 619, 1333
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 244, 281, 1191
HpyCH4III ACNGT 4 cut(s) 212, 411, 593, 1337
HpyCH4IV ACGT 1 cut(s) 1085
HpyF3I CTNAG 8 cut(s) 18, 240, 507, 561, 1128, 1410, 1476, 1551
HpySE526I ACGT 1 cut(s) 1085
Hsp92II CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
HspAI GCGC 2 cut(s) 433, 1178
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 4 cut(s) 537, 541, 643, 775
LmnI GCTCC 3 cut(s) 105, 369, 1498
LweI GCATC 3 cut(s) 547, 907, 1141
MaeI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
MaeII ACGT 1 cut(s) 1085
MaeIII GTNAC 3 cut(s) 81, 235, 1387
MalI GATC 4 cut(s) 539, 543, 645, 777
MbiI CCGCTC 1 cut(s) 1493
MboI GATC 4 cut(s) 537, 541, 643, 775
MboII GAAGA 9 cut(s) 248, 350, 407, 523, 566, 848, 996, 1061, 1069
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 3 cut(s) 157, 1109, 1325
MluCI AATT 8 cut(s) 143, 230, 416, 450, 755, 922, 1259, 1446
MmeI TCCRAC 2 cut(s) 393, 585
Mph1103I ATGCAT 1 cut(s) 71
MseI TTAA 3 cut(s) 717, 758, 885
MslI CAYNNNNRTG 3 cut(s) 88, 848, 1088
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 3 cut(s) 103, 1504, 1521
MspR9I CCNGG 1 cut(s) 1521
MssI GTTTAAAC 1 cut(s) 886
Mva1269I GAATGC 2 cut(s) 1066, 1341
NciI CCSGG 1 cut(s) 1521
NdeI CATATG 3 cut(s) 810, 1327, 1383
NdeII GATC 4 cut(s) 537, 541, 643, 775
NlaIII CATG 7 cut(s) 135, 302, 776, 853, 1141, 1270, 1321
NlaIV GGNNCC 3 cut(s) 371, 1221, 1401
NmuCI GTSAC 2 cut(s) 81, 1387
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 2 cut(s) 853, 1270
NspV TTCGAA 1 cut(s) 802
OliI CACNNNNGTG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 2 cut(s) 1066, 1341
PfeI GAWTC 5 cut(s) 464, 782, 1112, 1234, 1429
PmeI GTTTAAAC 1 cut(s) 886
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 371, 1221, 1401
PspPI GGNCC 3 cut(s) 500, 1134, 1361
PstI CTGCAG 2 cut(s) 207, 586
PsuI RGATCY 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 3 cut(s) 631, 1205, 1443
RsaNI GTAC 3 cut(s) 630, 1204, 1442
RseI CAYNNNNRTG 3 cut(s) 88, 848, 1088
SaqAI TTAA 3 cut(s) 717, 758, 885
Sau3AI GATC 4 cut(s) 537, 541, 643, 775
Sau96I GGNCC 3 cut(s) 500, 1134, 1361
ScrFI CCNGG 1 cut(s) 1521
SduI GDGCHC 3 cut(s) 157, 1109, 1325
SfaNI GCATC 3 cut(s) 547, 907, 1141
SfcI CTRYAG 2 cut(s) 203, 582
SfuI TTCGAA 1 cut(s) 802
SinI GGWCC 2 cut(s) 500, 1134
SmiMI CAYNNNNRTG 3 cut(s) 88, 848, 1088
SmlI CTYRAG 1 cut(s) 1251
SmoI CTYRAG 1 cut(s) 1251
Sse9I AATT 8 cut(s) 143, 230, 416, 450, 755, 922, 1259, 1446
SsiI CCGC 9 cut(s) 113, 217, 522, 652, 853, 859, 933, 1229, 1491
SspI AATATT 3 cut(s) 691, 799, 1295
SspMI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
StyD4I CCNGG 1 cut(s) 1519
StyI CCWWGG 2 cut(s) 45, 944
TaaI ACNGT 4 cut(s) 212, 411, 593, 1337
TaiI ACGT 1 cut(s) 1088
TaqI TCGA 3 cut(s) 540, 802, 1013
TasI AATT 8 cut(s) 143, 230, 416, 450, 755, 922, 1259, 1446
TatI WGTACW 2 cut(s) 629, 1441
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 5 cut(s) 464, 782, 1112, 1234, 1429
Tru1I TTAA 3 cut(s) 717, 758, 885
Tru9I TTAA 3 cut(s) 717, 758, 885
TscAI CASTG 5 cut(s) 22, 427, 556, 707, 1114
TseFI GTSAC 2 cut(s) 81, 1387
Tsp45I GTSAC 2 cut(s) 81, 1387
TspDTI ATGAA 3 cut(s) 17, 243, 1442
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 5 cut(s) 22, 427, 556, 707, 1114
VneI GTGCAC 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 500, 1134
XapI RAATTY 3 cut(s) 230, 416, 922
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 2 cut(s) 853, 1270
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XmaJI CCTAGG 1 cut(s) 944
XspI CTAG 6 cut(s) 318, 674, 945, 999, 1358, 1497
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.