Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006602

Physical Location & Seq

Genomic Coordinates Reverse (-)

30617857 .. 30620927

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTCAGAGATTGATGAGAAGCAGCTGGTGCTGTATGCTCAGATGGCTAACCTTGTCAGCTTGATACTTCAGTGGCCCGATATTAATATAAAGGAGATTGCAGAAAACTTTTCCAAGCTTGCATGCAATGCACACACAATTTGTGACAGTGAATTGAGACCCCTGGGCACTGGGCTATATCCTGTCGTCTCCATTATTAACCACAGCTGCCTGCCCAATTCTGTTTTGTTATTCGAGGGACGATCTGCTGTTGTACGTGCTGTGCAGTATATACCCAAAGGTGCTGAGGTGTTGATAAGTTACATAGAAACTGCTGGAAGCACTATGACTCGGCAGAAGGCACTTAAAGAACAATACCATTTCACTTGTACATGTCCCCGCTGCATTAAAGTGGGTCAGTATGATGATATCCAAGAGAGTGCCAGTCTTGAAGGTTACCGATGCAAGGATAAGGGATGCAGTGGCTTTTTGATTCGCCAACCTGATGGTGATGGGTTCGTGTGCCAGCAATGTGGACTTGTTAGGAGCAAAGAAGAGATAAGGAAGATAGCAAGTGAACTAAAATCTTTGTCAGACAAGGCTCCTATATCTACATCCTCTTGCGATTACCATGAAGCGATATCTGGGCTTAAGGCAATTGAGACACTGCAGAAGAAACTGTATCATCCATTTTCAATCTCTTTGATGCAAACTCGGGAGAAGCTTTTAAAGATTTCGATGGAGCTGGAAGACTGGAATGAAGCTTTAGCATATTGCAGATTGACCATTCCAGTGTATCAAAGAGTATATCTTGGTTGTCATCCTTTGCTTGGATTGCAATATTATACATGCGGGAAGCTCGAATGGTTACTAGGAGACACGGAGAACGCTGTCAAATCCCTGACCAAGGCGGTAGATATACTGCGGATTACTCATGGGACAAGCACACCTTTCATGAAGGACCTATTGATGAGGCTGGAGGAAGCACGCGCTGAAGCTTCTTATAAACTTTCATCAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET TPR_12 zf-MYND

Protein Analysis

335

Amino Acids

37.54

Weight (kDa)

6.21

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	44 - 101	5.2e-07	SET domain
TPR_12	PF13424	240 - 302	6.2e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17900
fragaria_vesca	FvH4_2g26280
malus_domestica	MD15G1356600.v1.1
prunus_persica	Prupe.1G503800_v2.0.a1
pyrus_communis	pycom15g31870
rosa_chinensis	RchiOBHm_Chr6g0294881 RchiOBHm_Chr6g0294891
rosa_laevigata	RLG00000011833 RLG00000011834
rosa_multiflora	Rmu_sc0008966.1_g000011 Rmu_sc0008966.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172910 Rroxscaffold_7G00172930
rosa_rugosa	Rorug06G0247700 Rorug06G0248300 Rorug06G0248300
rosa_samantha	Rh4BG161800 Rh6AG361100 Rh6AG361200 Rh6BG367700 Rh6BG367800 Rh6CG374900 Rh6CG375000 Rh6DG361600 Rh6DG361700
rosa_wichuraiana	Rw6G031500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	984
AccII	CGCG	1 cut(s)	969
AciI	CCGC	4 cut(s)	379, 831, 890, 904
AcuI	CTGAAG	2 cut(s)	53, 993
AfaI	GTAC	2 cut(s)	255, 370
AfiI	CCNNNNNNNGG	3 cut(s)	445, 809, 886
AflII	CTTAAG	1 cut(s)	629
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	431, 675
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	9 cut(s)	25, 60, 118, 207, 703, 724, 743, 838, 977
AluI	AGCT	9 cut(s)	25, 60, 118, 207, 703, 724, 743, 838, 977
Alw26I	GTCTC	4 cut(s)	151, 193, 635, 849
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	22, 207, 381
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	971
AspS9I	GGNCC	2 cut(s)	75, 940
AsuHPI	GGTGA	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	693
AvaII	GGWCC	1 cut(s)	940
BaeGI	GKGCMC	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	56, 89
BbsI	GAAGAC	1 cut(s)	735
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	34, 194, 368
BccI	CCATC	4 cut(s)	37, 479, 485, 712
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	4 cut(s)	151, 193, 635, 849
BfaI	CTAG	1 cut(s)	851
BfmI	CTRYAG	1 cut(s)	647
BfrI	CTTAAG	1 cut(s)	629
BisI	GCNGC	3 cut(s)	23, 208, 382
BlsI	GCNGC	3 cut(s)	24, 209, 383
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	940
BmeT110I	CYCGRG	1 cut(s)	693
BmgT120I	GGNCC	2 cut(s)	75, 940
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	3 cut(s)	431, 446, 675
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	735
BpmI	CTGGAG	1 cut(s)	977
Bpu10I	CCTNAGC	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	162, 163, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 809, 886
Bse1I	ACTGG	4 cut(s)	175, 423, 737, 770
Bse3DI	GCAATG	2 cut(s)	133, 515
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	162, 163, 885
BseGI	GGATG	4 cut(s)	461, 593, 664, 799
BseLI	CCNNNNNNNGG	3 cut(s)	445, 809, 886
BseMI	GCAATG	2 cut(s)	133, 515
BseMII	CTCAG	2 cut(s)	53, 276
BseNI	ACTGG	4 cut(s)	175, 423, 737, 770
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	34, 194, 368
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	969
BshFI	GGCC	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	693
BslFI	GGGAC	3 cut(s)	252, 360, 931
BslI	CCNNNNNNNGG	3 cut(s)	445, 809, 886
BsmAI	GTCTC	4 cut(s)	151, 193, 635, 849
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	3 cut(s)	252, 360, 931
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	693
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	4 cut(s)	379, 831, 890, 904
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	52, 277
BspFNI	CGCG	1 cut(s)	969
BspHI	TCATGA	1 cut(s)	933
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	651
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	2 cut(s)	133, 515
BsrGI	TGTACA	1 cut(s)	368
BsrI	ACTGG	4 cut(s)	175, 423, 737, 770
BssECI	CCNNGG	3 cut(s)	162, 163, 885
BssMI	GATC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	885
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	149, 660
Bst6I	CTCTTC	2 cut(s)	528, 993
BstAFI	CTTAAG	1 cut(s)	629
BstAPI	GCANNNNNTGC	2 cut(s)	28, 128
BstAUI	TGTACA	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	5 cut(s)	120, 124, 212, 506, 967
BstDEI	CTNAG	2 cut(s)	39, 285
BstEII	GGTNACC	1 cut(s)	434
BstENI	CCTNNNNNAGG	1 cut(s)	884
BstF5I	GGATG	4 cut(s)	461, 593, 664, 799
BstFNI	CGCG	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	971
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	4 cut(s)	151, 193, 635, 849
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 44, 128, 814
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	3 cut(s)	126, 375, 831
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	647
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	1 cut(s)	969
BstV1I	GCAGC	3 cut(s)	34, 194, 368
BstV2I	GAAGAC	1 cut(s)	735
BstXI	CCANNNNNNTGG	2 cut(s)	485, 512
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	461, 593, 664, 799
BtsI	GCAGTG	2 cut(s)	466, 644
BtsIMutI	CAGTG	6 cut(s)	77, 154, 168, 466, 644, 777
Cac8I	GCNNGC	5 cut(s)	120, 124, 212, 506, 967
CciI	TCATGA	1 cut(s)	933
CfoI	GCGC	1 cut(s)	971
Cfr13I	GGNCC	2 cut(s)	75, 940
Csp6I	GTAC	2 cut(s)	254, 369
CviAII	CATG	6 cut(s)	123, 372, 611, 828, 914, 934
CviQI	GTAC	2 cut(s)	254, 369
DdeI	CTNAG	2 cut(s)	39, 285
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
DraI	TTTAAA	1 cut(s)	708
Eam1104I	CTCTTC	2 cut(s)	528, 993
EarI	CTCTTC	2 cut(s)	528, 993
Eco130I	CCWWGG	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	2 cut(s)	409, 621
Eco47I	GGWCC	1 cut(s)	940
Eco57I	CTGAAG	2 cut(s)	53, 993
Eco88I	CYCGRG	1 cut(s)	693
Eco91I	GGTNACC	1 cut(s)	434
EcoNI	CCTNNNNNAGG	1 cut(s)	884
EcoO109I	RGGNCCY	1 cut(s)	940
EcoO65I	GGTNACC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	162
EcoRV	GATATC	2 cut(s)	409, 621
EcoT14I	CCWWGG	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	885
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	6 cut(s)	126, 375, 614, 831, 917, 937
FalI	AAGNNNNNCTT	2 cut(s)	913, 945
FaqI	GGGAC	3 cut(s)	252, 360, 931
FatI	CATG	6 cut(s)	122, 371, 610, 827, 913, 933
FauI	CCCGC	2 cut(s)	386, 824
Fnu4HI	GCNGC	3 cut(s)	23, 208, 382
FokI	GGATG	4 cut(s)	468, 580, 651, 786
Fsp4HI	GCNGC	3 cut(s)	23, 208, 382
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	1 cut(s)	970
GluI	GCNGC	3 cut(s)	23, 208, 382
GsuI	CTGGAG	1 cut(s)	977
HaeIII	GGCC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	971
Hin1II	CATG	6 cut(s)	126, 375, 614, 831, 917, 937
Hin6I	GCGC	1 cut(s)	969
HinP1I	GCGC	1 cut(s)	969
HindIII	AAGCTT	4 cut(s)	116, 701, 741, 975
HinfI	GANTC	2 cut(s)	328, 472
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	515, 557
Hpy188I	TCNGA	4 cut(s)	7, 42, 574, 997
Hpy188III	TCNNGA	3 cut(s)	428, 695, 934
Hpy8I	GTNNAC	2 cut(s)	515, 557
HpyAV	CCTTC	3 cut(s)	331, 425, 931
HpyCH4III	ACNGT	2 cut(s)	149, 660
HpyCH4IV	ACGT	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 44, 128, 814
HpyF3I	CTNAG	2 cut(s)	39, 285
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	6 cut(s)	126, 375, 614, 831, 917, 937
HspAI	GCGC	1 cut(s)	969
Kzo9I	GATC	1 cut(s)	242
LmnI	GCTCC	3 cut(s)	525, 586, 721
Lsp1109I	GCAGC	3 cut(s)	34, 194, 368
LweI	GCATC	3 cut(s)	431, 446, 675
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	4 cut(s)	143, 299, 434, 846
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	4 cut(s)	545, 556, 664, 740
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	4 cut(s)	138, 152, 217, 636
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	229, 280, 607, 945, 952
MseI	TTAA	6 cut(s)	84, 198, 345, 387, 630, 707
MslI	CAYNNNNRTG	2 cut(s)	389, 770
MspA1I	CMGCKG	3 cut(s)	25, 207, 381
MspCI	CTTAAG	1 cut(s)	629
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	4 cut(s)	28, 44, 128, 814
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	6 cut(s)	126, 375, 614, 831, 917, 937
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	3 cut(s)	126, 375, 831
PaeI	GCATGC	1 cut(s)	126
PagI	TCATGA	1 cut(s)	933
PasI	CCCWGGG	1 cut(s)	163
PciI	ACATGT	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	24, 209, 383
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	940
PscI	ACATGT	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	940
Psp6I	CCWGG	1 cut(s)	162
PspEI	GGTNACC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	75, 940
PspPPI	RGGWCCY	1 cut(s)	940
PstI	CTGCAG	1 cut(s)	651
PvuII	CAGCTG	2 cut(s)	25, 207
RsaI	GTAC	2 cut(s)	255, 370
RsaNI	GTAC	2 cut(s)	254, 369
RseI	CAYNNNNRTG	2 cut(s)	389, 770
SaqAI	TTAA	6 cut(s)	84, 198, 345, 387, 630, 707
SatI	GCNGC	3 cut(s)	23, 208, 382
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	2 cut(s)	75, 940
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	170
SfaNI	GCATC	3 cut(s)	431, 446, 675
SfcI	CTRYAG	1 cut(s)	647
SinI	GGWCC	1 cut(s)	940
SmiMI	CAYNNNNRTG	2 cut(s)	389, 770
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	4 cut(s)	138, 152, 217, 636
SsiI	CCGC	4 cut(s)	379, 831, 890, 904
SspI	AATATT	1 cut(s)	821
SspMI	CTAG	1 cut(s)	851
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	2 cut(s)	149, 660
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	234, 716, 840
TasI	AATT	4 cut(s)	138, 152, 217, 636
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	6 cut(s)	84, 198, 345, 387, 630, 707
Tru9I	TTAA	6 cut(s)	84, 198, 345, 387, 630, 707
TscAI	CASTG	6 cut(s)	77, 154, 175, 466, 651, 777
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	3 cut(s)	22, 207, 381
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	627, 753, 922, 950, 981
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	6 cut(s)	77, 154, 175, 466, 651, 777
Vha464I	CTTAAG	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	940
VspI	ATTAAT	1 cut(s)	84
XagI	CCTNNNNNAGG	1 cut(s)	884
XceI	RCATGY	3 cut(s)	126, 375, 831
XspI	CTAG	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.