Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

37669200 .. 37672969

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGTTGCATGCTAGTCGTCGCAACTTCTGGAACTGGGTTTATTCTTGGAAGTGGCCATGCCATTGAATTTGCTGGACTTTGTTGCACATGTGCTGGTACCATGATGGTTGCAGCATCTGCTAATTCCTTAAATCAGGTGTTTGAGAAGCAAAATGATGGCATAATGAATAGAACGAAGAACAGACCATTACCTTCAGGACGCATTACGATCCCTCATGCAGTCACCTGGGCATCCTCTGCTGGTTTAGCTGGCACTGCTTTGTTAGCAAGCAAGGCTAATATGTTGGCAGCTGGTCTTGGAGCTTCAAATCTAATACTTTATGCGTTTGTCTACACTCCATTGAAGCAGATTCACCCAGTGAATACATGGGTTGGTGCTGTTGTTGGTGCTATCCCTCCGCTTCTAGGCTTCCACTTGTTTAACAGTAAAATAGATGTCTCTCTTGCACACACACGCGCATGCTTGCGTGTGTTTACACCTTATAATGGGACCATTTCAAGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

170

Amino Acids

17.65

Weight (kDa)

9.42

Isoelectric Point (pI)

22.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	7 - 147	6.5e-37	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	459
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	407, 488
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	68, 309, 346, 501
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	3 cut(s)	251, 293, 305
AluI	AGCT	3 cut(s)	251, 293, 305
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	113, 290
ApoI	RAATTY	1 cut(s)	68
Asp718I	GGTACC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	217, 347
AvaII	GGWCC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	125, 302
BccI	CCATC	2 cut(s)	100, 152
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	2 cut(s)	14, 407
BisI	GCNGC	2 cut(s)	114, 291
BlsI	GCNGC	2 cut(s)	115, 292
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	2 cut(s)	100, 493
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	2 cut(s)	45, 353
BmsI	GCATC	2 cut(s)	125, 242
BmuI	ACTGGG	2 cut(s)	45, 353
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 488
Bse1I	ACTGG	2 cut(s)	40, 359
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	407, 488
BseNI	ACTGG	2 cut(s)	40, 359
BseXI	GCAGC	2 cut(s)	125, 302
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	2 cut(s)	407, 488
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	100, 493
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	40, 359
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	428
BstAPI	GCANNNNNTGC	2 cut(s)	119, 239
BstC8I	GCNNGC	5 cut(s)	11, 253, 271, 463, 467
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 239, 248, 257, 266, 275
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	3 cut(s)	13, 93, 465
BstSCI	CCNGG	1 cut(s)	227
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	125, 302
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 366
Cac8I	GCNNGC	5 cut(s)	11, 253, 271, 463, 467
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	492
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	7 cut(s)	10, 59, 90, 103, 218, 369, 462
CviJI	RGCY	6 cut(s)	57, 251, 278, 293, 305, 411
CviKI_1	RGCY	6 cut(s)	57, 251, 278, 293, 305, 411
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
DraIII	CACNNNGTG	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	227
FaeI	CATG	7 cut(s)	13, 62, 93, 106, 221, 372, 465
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	7 cut(s)	9, 58, 89, 102, 217, 368, 461
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	114, 291
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	114, 291
FspBI	CTAG	2 cut(s)	14, 407
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	2 cut(s)	114, 291
HaeIII	GGCC	1 cut(s)	57
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	7 cut(s)	13, 62, 93, 106, 221, 372, 465
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	1 cut(s)	352
HphI	GGTGA	2 cut(s)	217, 347
Hpy166II	GTNNAC	2 cut(s)	334, 477
Hpy188III	TCNNGA	2 cut(s)	30, 198
Hpy8I	GTNNAC	2 cut(s)	334, 477
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	5 cut(s)	9, 87, 113, 221, 449
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 239, 248, 257, 266, 275
Hsp92II	CATG	7 cut(s)	13, 62, 93, 106, 221, 372, 465
HspAI	GCGC	1 cut(s)	459
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	2 cut(s)	125, 302
LweI	GCATC	2 cut(s)	125, 242
MaeI	CTAG	2 cut(s)	14, 407
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	2 cut(s)	68, 124
MluNI	TGGCCA	1 cut(s)	57
MnlI	CCTC	3 cut(s)	225, 247, 408
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	2 cut(s)	131, 423
MslI	CAYNNNNRTG	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	6 cut(s)	119, 239, 248, 257, 266, 275
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	7 cut(s)	13, 62, 93, 106, 221, 372, 465
NlaIV	GGNNCC	2 cut(s)	100, 493
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	3 cut(s)	13, 93, 465
PaeI	GCATGC	2 cut(s)	13, 465
PciI	ACATGT	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	115, 292
PscI	ACATGT	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	100, 493
PspPI	GGNCC	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	131, 423
SatI	GCNGC	2 cut(s)	114, 291
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	492
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	7 cut(s)	141, 196, 230, 253, 295, 307, 484
SfaNI	GCATC	2 cut(s)	125, 242
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	460
SphI	GCATGC	2 cut(s)	13, 465
Sse9I	AATT	2 cut(s)	68, 124
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	2 cut(s)	14, 407
StyD4I	CCNGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	68, 124
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	131, 423
Tru9I	TTAA	2 cut(s)	131, 423
TscAI	CASTG	2 cut(s)	262, 366
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	113, 290
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	262, 366
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	3 cut(s)	13, 93, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	366
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	14, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.