Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

37704955 .. 37708605

Gene Structure 3651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCTAGTCGTCGCAACTTCTGGAACTGGGTTTATTCTTGGAAGTGGCCATGCCATTGATTTTGCTGGACTTTGTTTCACATGTGCTGGTACCATGATGGTTGCAGCATCTGCTAATTCCTTAAATCAGGTGTTTGAGAAGCAAAATGATGCTAAAATGAATAGAACGAAGAACAGACCATTACCTTCAGGACGCATTACGATCCCTCATGCAGTCACCTGGGCATCCGCTGCTGGTTTAGCAGGCACTGCTTTGTTAGCAAGCAAGGCTAATATGTTGGCAGCTGGTCTTGGAGCTTCAAATCTAATACTTTATGCATTTGTCTACACTCCATTGAAGCAGATTCACCCAGTGAATACATGGGTTGGTGCTGTTGTTGGTGCTATCCCTCCGCTTCTAGGTCATGACATATATCAAGAACTGAATATTCCTGCATGTTGGGCTTTCAGTTGGGCTGCAGCTTCCAGCCAGGTTTCCCTCAATGCAATGCTACTCCCAGCTGCTCTCTACTTTTGGCAAATACCTCATTTTATGGGCCTAGCATACTTGTGCCGTAATGACTATGCTGCTGGAGGATTTAGGATGTTCTCCCTTGCCGATGCTTGTGGTCAGAGAACGGCCTCAGTAGCTTTAAGGAATTGCATATACATGATCCCTTTGGGGTTTTTGGCCTATGACTGGGGTATGACCTCTGGATGGTTTTGTCTTGAATCTACTCTTCTTACTCTCGCGATAACTGCAACATCATTTTCGTTCTACCGAGACCGTACCACTCATAAAGCAAGGAAGATGTTTCATGCCAGCCTTCTTTACCTTCCTGTATTTATGTCGGGGATTATGTTCCACCGCATCGTTGATAATCAACAAAGCCTTTCTGAAGAGAATTTAGAGAGTAGTGTTGAGCTTTCATTGTCCTCACAAGATGGCAATGTCAAACGGAAGAGTAGGTCGAGGAATTCCACAGATGGCTTACAAGTTCGCCCACCTGTATCATACGCCTCTATTGCACCGTTTCCATTTCTCCCAGTTCCTTCGTATGCCGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

350

Amino Acids

37.82

Weight (kDa)

8.95

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	4 - 268	1.6e-43	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	731
AciI	CCGC	3 cut(s)	228, 392, 847
AclWI	GGATC	3 cut(s)	196, 646, 1037
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	883, 955
AcuI	CTGAAG	2 cut(s)	171, 897
AdeI	CACNNNGTG	1 cut(s)	352
AfaI	GTAC	2 cut(s)	91, 769
AfiI	CCNNNNNNNGG	3 cut(s)	398, 678, 696
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	300, 337, 710
AjnI	CCWGG	2 cut(s)	218, 468
AluBI	AGCT	6 cut(s)	284, 296, 461, 500, 629, 904
AluI	AGCT	6 cut(s)	284, 296, 461, 500, 629, 904
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	3 cut(s)	196, 646, 1037
AlwNI	CAGNNNCTG	2 cut(s)	110, 248
AoxI	GGCC	4 cut(s)	46, 535, 618, 669
ApeKI	GCWGC	7 cut(s)	104, 230, 281, 455, 458, 500, 566
ApoI	RAATTY	2 cut(s)	883, 955
Asp718I	GGTACC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	208, 338
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	7 cut(s)	116, 217, 293, 442, 470, 487, 553
BccI	CCATC	4 cut(s)	91, 690, 917, 959
BceAI	ACGGC	2 cut(s)	537, 633
BciT130I	CCWGG	2 cut(s)	220, 470
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	3 cut(s)	5, 398, 539
BfmI	CTRYAG	1 cut(s)	456
BisI	GCNGC	7 cut(s)	105, 231, 282, 456, 459, 501, 567
BlsI	GCNGC	7 cut(s)	106, 232, 283, 457, 460, 502, 568
Bme1390I	CCNGG	2 cut(s)	220, 470
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	220, 470
BmrI	ACTGGG	4 cut(s)	36, 344, 688, 1019
BmsI	GCATC	5 cut(s)	116, 139, 233, 589, 858
BmuI	ACTGGG	4 cut(s)	36, 344, 688, 1019
BpmI	CTGGAG	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 678, 696
Bse1I	ACTGG	4 cut(s)	31, 350, 683, 1025
Bse3DI	GCAATG	2 cut(s)	492, 934
BseBI	CCWGG	2 cut(s)	220, 470
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	3 cut(s)	224, 588, 701
BseLI	CCNNNNNNNGG	3 cut(s)	398, 678, 696
BseMI	GCAATG	2 cut(s)	492, 934
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	4 cut(s)	31, 350, 683, 1025
BseXI	GCAGC	7 cut(s)	116, 217, 293, 442, 470, 487, 553
BseYI	CCCAGC	1 cut(s)	496
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	4 cut(s)	48, 537, 620, 671
BshNI	GGYRCC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	398, 678, 696
BsmAI	GTCTC	1 cut(s)	756
BsnI	GGCC	4 cut(s)	48, 537, 620, 671
Bso31I	GGTCTC	1 cut(s)	756
Bsp143I	GATC	3 cut(s)	201, 651, 1042
Bsp68I	TCGCGA	1 cut(s)	731
BspACI	CCGC	3 cut(s)	228, 392, 847
BspANI	GGCC	4 cut(s)	48, 537, 620, 671
BspCNI	CTCAG	1 cut(s)	635
BspFNI	CGCG	1 cut(s)	731
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	3 cut(s)	196, 646, 1037
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	756
BsrDI	GCAATG	2 cut(s)	492, 934
BsrI	ACTGG	4 cut(s)	31, 350, 683, 1025
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	201, 651, 1042
Bst2UI	CCWGG	2 cut(s)	220, 470
Bst4CI	ACNGT	2 cut(s)	767, 1011
Bst6I	CTCTTC	3 cut(s)	723, 873, 935
BstAPI	GCANNNNNTGC	3 cut(s)	110, 230, 248
BstC8I	GCNNGC	3 cut(s)	244, 262, 802
BstDEI	CTNAG	1 cut(s)	622
BstF5I	GGATG	3 cut(s)	224, 588, 701
BstFNI	CGCG	1 cut(s)	731
BstKTI	GATC	3 cut(s)	204, 654, 1045
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	3 cut(s)	201, 651, 1042
BstNI	CCWGG	2 cut(s)	220, 470
BstNSI	RCATGY	2 cut(s)	84, 438
BstSCI	CCNGG	2 cut(s)	218, 468
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	7 cut(s)	116, 217, 293, 442, 470, 487, 553
BsuRI	GGCC	4 cut(s)	48, 537, 620, 671
BtsCI	GGATG	3 cut(s)	224, 588, 701
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 357
BtuMI	TCGCGA	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	244, 262, 802
CaiI	CAGNNNCTG	2 cut(s)	110, 248
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	535
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	90, 768
CviQI	GTAC	2 cut(s)	90, 768
DdeI	CTNAG	1 cut(s)	622
DpnI	GATC	3 cut(s)	203, 653, 1044
DpnII	GATC	3 cut(s)	201, 651, 1042
DraIII	CACNNNGTG	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	3 cut(s)	723, 873, 935
EarI	CTCTTC	3 cut(s)	723, 873, 935
Eco31I	GGTCTC	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	171, 897
EcoRI	GAATTC	1 cut(s)	955
EcoRII	CCWGG	2 cut(s)	218, 468
EcoT22I	ATGCAT	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	7 cut(s)	105, 231, 282, 456, 459, 501, 567
FokI	GGATG	3 cut(s)	211, 595, 708
Fsp4HI	GCNGC	7 cut(s)	105, 231, 282, 456, 459, 501, 567
FspBI	CTAG	3 cut(s)	5, 398, 539
GluI	GCNGC	7 cut(s)	105, 231, 282, 456, 459, 501, 567
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	4 cut(s)	48, 537, 620, 671
HgaI	GACGC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	343, 710
HphI	GGTGA	2 cut(s)	208, 338
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	612, 877
Hpy188III	TCNNGA	7 cut(s)	21, 189, 404, 416, 693, 707, 730
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	195, 815, 824, 1041
HpyCH4III	ACNGT	2 cut(s)	767, 1011
HpyCH4V	TGCA	9 cut(s)	104, 212, 317, 434, 458, 485, 642, 740, 1007
HpyF3I	CTNAG	1 cut(s)	622
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	201, 651, 1042
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	7 cut(s)	116, 217, 293, 442, 470, 487, 553
LweI	GCATC	5 cut(s)	116, 139, 233, 589, 858
MaeI	CTAG	3 cut(s)	5, 398, 539
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	3 cut(s)	203, 653, 1044
MboI	GATC	3 cut(s)	201, 651, 1042
MboII	GAAGA	5 cut(s)	181, 710, 799, 890, 952
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	4 cut(s)	115, 637, 883, 955
MluNI	TGGCCA	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	122, 632
MslI	CAYNNNNRTG	2 cut(s)	547, 647
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	3 cut(s)	230, 284, 500
MspR9I	CCNGG	2 cut(s)	220, 470
MvaI	CCWGG	2 cut(s)	220, 470
MvnI	CGCG	1 cut(s)	731
NdeII	GATC	3 cut(s)	201, 651, 1042
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	214
NruI	TCGCGA	1 cut(s)	731
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	2 cut(s)	84, 438
PagI	TCATGA	1 cut(s)	403
PciI	ACATGT	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	343, 710
PkrI	GCNGC	7 cut(s)	106, 232, 283, 457, 460, 502, 568
PscI	ACATGT	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	218, 468
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	2 cut(s)	218, 468
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	535
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	2 cut(s)	110, 248
PvuII	CAGCTG	2 cut(s)	284, 500
RruI	TCGCGA	1 cut(s)	731
RsaI	GTAC	2 cut(s)	91, 769
RsaNI	GTAC	2 cut(s)	90, 768
RseI	CAYNNNNRTG	2 cut(s)	547, 647
SaqAI	TTAA	2 cut(s)	122, 632
SatI	GCNGC	7 cut(s)	105, 231, 282, 456, 459, 501, 567
Sau3AI	GATC	3 cut(s)	201, 651, 1042
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	220, 470
SfaNI	GCATC	5 cut(s)	116, 139, 233, 589, 858
SfcI	CTRYAG	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	547, 647
Sse9I	AATT	4 cut(s)	115, 637, 883, 955
SsiI	CCGC	3 cut(s)	228, 392, 847
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	3 cut(s)	5, 398, 539
StyD4I	CCNGG	2 cut(s)	218, 468
TaaI	ACNGT	2 cut(s)	767, 1011
TaqI	TCGA	1 cut(s)	950
TasI	AATT	4 cut(s)	115, 637, 883, 955
TfiI	GAWTC	2 cut(s)	343, 710
Tru1I	TTAA	2 cut(s)	122, 632
Tru9I	TTAA	2 cut(s)	122, 632
TscAI	CASTG	2 cut(s)	253, 357
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	7 cut(s)	104, 230, 281, 455, 458, 500, 566
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	173, 785, 897
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	2 cut(s)	253, 357
XapI	RAATTY	2 cut(s)	883, 955
XceI	RCATGY	2 cut(s)	84, 438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	3 cut(s)	5, 398, 539
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.