pycom15g37850

Protoheme IX farnesyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
37733471 .. 37739022
5552 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1320 bp
ATGTGGAGGAACTCGAAGAGTTTATCTTCCAAGTTCCCGATATCTAACATCCTACTCTACCTCCTATCCTCCGCCTCCTCATCCGCCAAACACGGCGGCGTTCGAACTCTGCTGCTCTCCCACTCCCTCTCCCAATCCCACCCCTACTCCTCTTCCTCTTCGCCTTCAGATTCTCTCAAGCTCGGGCTTCACCGATCGATCGATGGAGTCGGAGCCCTTTCGGCGGCAGTTGATCTCCCGTCGTTGGCTTCCAGGGCCTCGCACTTGGCCCGCCACTATGGGCAGTGCTATTGGGAGCTCTCCAAAGCTCGCCTCAGCATGCTAGTCGTCGCAACTTCTGGAACTGGGTTTATTCTTGGAAGTGGCCATGCCATTGATTTTGCTGGACTTTGTTGCACATGTGCTGGTACCATGATGGTTGCAGCATCTGCTAATTCCTTAAATCAGGTGTTTGAGAAGCAAAATGATGGCAAAATGAATAGAACGAAGAACAGACCATTACCTTCAGGACGCATTACGATCCCTCATGCAGTCACCTGGGCATCCTCTGCTGGTTTAGCTGGCACTGCTTTGTTAGCAAGCAAGGCTAATATGTTGGCAGCTGGTCTTGGAGCTTCAAATCTAATACTTTATGCGTTTGTCTACACTCCATTGAAGCAGATTCACCCAGTGAATACATGGGTTGGTGCTGTTGTTGGTGCTATCCCTCCGCTTCTAGGTTGGGCTGCAGCTTCCGGCCAGGTTTCCCTCAATGCAATGCTACTCCCAGCTGCTCTCTACTTTTGGCAAATACCTCATTTTATGGCCCTAGCATACTTGTGCCGTAATGACTATGCTGCTGGAGGATTTAGGATGTTCTCCCTTGCCGATGCTTGTGGTCAGAGAACGGCCACAGTAGCTTTAAGGAATTGCATATACATGATCCCTTTGGGGTTTTTGGCCTATGACTGGGGTATGACCTCTGGATGGTTTTGTCTTGAATCTACTCTTCTTACTCTCGCGATAACTGCAACATCATTTTCGTTCTACCGAGACCGTACCACACATAAAGCAAGGAAGATGTTTCATGCCAGCCTTCTTTACCTGCCTGTATTTATGTCGGGGATTATGTTCCACCGCATCGTTGATAATCAACAAAGCCTTTCTGAAGAGAATTTGGAGAGTAGTGTTGAGCTTTCATTGTCCTCACAAGACGGCAATGTCAAACGGAAGAGTAGGTCGAGGAATTCCACAGATGGCTCACAAGTTCGCCCACCTGTATCATACGCCTCTATTGCACCGTTTCCATTTCTCCCAGTTCCTTCGTATGCCGATCCATGA

Protein Analysis

440

Amino Acids

47.21

Weight (kDa)

9.56

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 110 - 358 3.8e-51 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1199
Acc36I ACCTGC 1 cut(s) 1092
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 642
AccII CGCG 1 cut(s) 1001
AciI CCGC 7 cut(s) 72, 84, 96, 224, 271, 710, 1117
AclWI GGATC 3 cut(s) 514, 916, 1307
AcoI YGGCCR 3 cut(s) 364, 736, 888
AcsI RAATTY 2 cut(s) 1153, 1225
AcuI CTGAAG 3 cut(s) 150, 489, 1167
AdeI CACNNNGTG 1 cut(s) 670
AfaI GTAC 2 cut(s) 409, 1039
AfiI CCNNNNNNNGG 5 cut(s) 223, 244, 716, 948, 966
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 3 cut(s) 618, 655, 980
AjnI CCWGG 3 cut(s) 251, 536, 738
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 1026
AlwI GGATC 3 cut(s) 514, 916, 1307
AlwNI CAGNNNCTG 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 7 cut(s) 255, 267, 364, 736, 804, 888, 939
ApeKI GCWGC 7 cut(s) 112, 422, 599, 725, 728, 770, 836
ApoI RAATTY 2 cut(s) 1153, 1225
Asp718I GGTACC 1 cut(s) 407
AspS9I GGNCC 3 cut(s) 255, 268, 805
AsuHPI GGTGA 3 cut(s) 182, 526, 656
AsuII TTCGAA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 366
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 2 cut(s) 217, 300
Bbv12I GWGCWC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 314
BbvI GCAGC 7 cut(s) 99, 434, 611, 712, 740, 757, 823
BccI CCATC 5 cut(s) 197, 409, 461, 960, 1229
BceAI ACGGC 4 cut(s) 109, 807, 903, 1210
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 3 cut(s) 253, 538, 740
BcoDI GTCTC 1 cut(s) 1026
BfaI CTAG 3 cut(s) 323, 716, 809
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 1092
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 9 cut(s) 97, 113, 225, 423, 600, 726, 729, 771, 837
BlsI GCNGC 9 cut(s) 98, 114, 226, 424, 601, 727, 730, 772, 838
Bme1390I CCNGG 3 cut(s) 253, 538, 740
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 3 cut(s) 255, 268, 805
BmiI GGNNCC 2 cut(s) 214, 409
BmrFI CCNGG 3 cut(s) 253, 538, 740
BmrI ACTGGG 4 cut(s) 354, 662, 958, 1289
BmsI GCATC 4 cut(s) 434, 551, 859, 1128
BmuI ACTGGG 4 cut(s) 354, 662, 958, 1289
BpmI CTGGAG 1 cut(s) 861
Bpu10I CCTNAGC 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 161
Bsa29I ATCGAT 2 cut(s) 197, 201
BsaI GGTCTC 1 cut(s) 1026
BsaJI CCNNGG 2 cut(s) 252, 537
BsaXI ACNNNNNCTCC 6 cut(s) 45, 75, 113, 131, 143, 161
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 244, 716, 948, 966
Bse1I ACTGG 4 cut(s) 349, 668, 953, 1295
Bse3DI GCAATG 2 cut(s) 762, 1204
BseBI CCWGG 3 cut(s) 253, 538, 740
BseCI ATCGAT 2 cut(s) 197, 201
BseDI CCNNGG 2 cut(s) 252, 537
BseGI GGATG 5 cut(s) 48, 80, 542, 858, 971
BseLI CCNNNNNNNGG 5 cut(s) 223, 244, 716, 948, 966
BseMI GCAATG 2 cut(s) 762, 1204
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 4 cut(s) 349, 668, 953, 1295
BseRI GAGGAG 2 cut(s) 67, 139
BseXI GCAGC 7 cut(s) 99, 434, 611, 712, 740, 757, 823
BseYI CCCAGC 1 cut(s) 766
Bsh1236I CGCG 1 cut(s) 1001
Bsh1285I CGRYCG 2 cut(s) 197, 201
BshFI GGCC 7 cut(s) 257, 269, 366, 738, 806, 890, 941
BshNI GGYRCC 1 cut(s) 407
BshVI ATCGAT 2 cut(s) 197, 201
BsiEI CGRYCG 2 cut(s) 197, 201
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 735
BslI CCNNNNNNNGG 5 cut(s) 223, 244, 716, 948, 966
BsmAI GTCTC 1 cut(s) 1026
BsnI GGCC 7 cut(s) 257, 269, 366, 738, 806, 890, 941
Bso31I GGTCTC 1 cut(s) 1026
BsoBI CYCGRG 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 217, 300
Bsp143I GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
Bsp68I TCGCGA 1 cut(s) 1001
BspACI CCGC 7 cut(s) 72, 84, 96, 224, 271, 710, 1117
BspANI GGCC 7 cut(s) 257, 269, 366, 738, 806, 890, 941
BspCNI CTCAG 1 cut(s) 327
BspDI ATCGAT 2 cut(s) 197, 201
BspFNI CGCG 1 cut(s) 1001
BspLI GGNNCC 2 cut(s) 214, 409
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 1092
BspPI GGATC 3 cut(s) 514, 916, 1307
BspT104I TTCGAA 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 1026
BsrDI GCAATG 2 cut(s) 762, 1204
BsrI ACTGG 4 cut(s) 349, 668, 953, 1295
BssECI CCNNGG 2 cut(s) 252, 537
BssMI GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
Bst2UI CCWGG 3 cut(s) 253, 538, 740
Bst4CI ACNGT 3 cut(s) 895, 1037, 1281
Bst6I CTCTTC 6 cut(s) 11, 157, 163, 993, 1143, 1205
BstAPI GCANNNNNTGC 2 cut(s) 428, 548
BstBI TTCGAA 1 cut(s) 103
BstC8I GCNNGC 6 cut(s) 271, 310, 320, 562, 580, 1072
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 5 cut(s) 48, 80, 542, 858, 971
BstFNI CGCG 1 cut(s) 1001
BstKTI GATC 6 cut(s) 197, 201, 235, 522, 924, 1315
BstMAI GTCTC 1 cut(s) 1026
BstMBI GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
BstMCI CGRYCG 2 cut(s) 197, 201
BstNI CCWGG 3 cut(s) 253, 538, 740
BstNSI RCATGY 2 cut(s) 322, 402
BstSCI CCNGG 3 cut(s) 251, 536, 738
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 7 cut(s) 99, 434, 611, 712, 740, 757, 823
Bsu15I ATCGAT 2 cut(s) 197, 201
BsuRI GGCC 7 cut(s) 257, 269, 366, 738, 806, 890, 941
BsuTUI ATCGAT 2 cut(s) 197, 201
BtsCI GGATG 5 cut(s) 48, 80, 542, 858, 971
BtsI GCAGTG 2 cut(s) 290, 564
BtsIMutI CAGTG 3 cut(s) 290, 564, 675
BtuMI TCGCGA 1 cut(s) 1001
BveI ACCTGC 1 cut(s) 1092
Cac8I GCNNGC 6 cut(s) 271, 310, 320, 562, 580, 1072
CaiI CAGNNNCTG 1 cut(s) 428
Cfr13I GGNCC 3 cut(s) 255, 268, 805
ClaI ATCGAT 2 cut(s) 197, 201
CseI GACGC 1 cut(s) 519
Csp6I GTAC 2 cut(s) 408, 1038
CviAII CATG 9 cut(s) 319, 368, 399, 412, 527, 678, 919, 1067, 1317
CviQI GTAC 2 cut(s) 408, 1038
DdeI CTNAG 1 cut(s) 314
DpnI GATC 6 cut(s) 196, 200, 234, 521, 923, 1314
DpnII GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
DraIII CACNNNGTG 1 cut(s) 670
DrdI GACNNNNNNGTC 1 cut(s) 1199
DseDI GACNNNNNNGTC 1 cut(s) 1199
EaeI YGGCCR 3 cut(s) 364, 736, 888
Eam1104I CTCTTC 6 cut(s) 11, 157, 163, 993, 1143, 1205
EarI CTCTTC 6 cut(s) 11, 157, 163, 993, 1143, 1205
EciI GGCGGA 2 cut(s) 61, 73
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 2 cut(s) 217, 300
Eco31I GGTCTC 1 cut(s) 1026
Eco32I GATATC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 3 cut(s) 150, 489, 1167
Eco88I CYCGRG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 1225
EcoRII CCWGG 3 cut(s) 251, 536, 738
EcoRV GATATC 1 cut(s) 42
EcoT38I GRGCYC 2 cut(s) 217, 300
FaeI CATG 9 cut(s) 322, 371, 402, 415, 530, 681, 922, 1070, 1320
FatI CATG 9 cut(s) 318, 367, 398, 411, 526, 677, 918, 1066, 1316
FauI CCCGC 1 cut(s) 278
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 9 cut(s) 97, 113, 225, 423, 600, 726, 729, 771, 837
FokI GGATG 5 cut(s) 35, 67, 529, 865, 978
FriOI GRGCYC 2 cut(s) 217, 300
Fsp4HI GCNGC 9 cut(s) 97, 113, 225, 423, 600, 726, 729, 771, 837
FspBI CTAG 3 cut(s) 323, 716, 809
GluI GCNGC 9 cut(s) 97, 113, 225, 423, 600, 726, 729, 771, 837
GsaI CCCAGC 1 cut(s) 770
GsuI CTGGAG 1 cut(s) 861
HaeIII GGCC 7 cut(s) 257, 269, 366, 738, 806, 890, 941
HapII CCGG 1 cut(s) 735
HgaI GACGC 1 cut(s) 519
Hin1II CATG 9 cut(s) 322, 371, 402, 415, 530, 681, 922, 1070, 1320
HinfI GANTC 4 cut(s) 170, 207, 661, 980
HpaII CCGG 1 cut(s) 735
HphI GGTGA 3 cut(s) 182, 526, 656
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 4 cut(s) 169, 212, 882, 1147
Hpy188III TCNNGA 6 cut(s) 37, 339, 507, 963, 977, 1000
Hpy8I GTNNAC 1 cut(s) 643
Hpy99I CGWCG 2 cut(s) 244, 332
HpyAV CCTTC 4 cut(s) 174, 513, 1085, 1311
HpyCH4III ACNGT 3 cut(s) 895, 1037, 1281
HpyCH4V TGCA 8 cut(s) 396, 422, 530, 728, 755, 912, 1010, 1277
HpyF3I CTNAG 1 cut(s) 314
Hsp92II CATG 9 cut(s) 322, 371, 402, 415, 530, 681, 922, 1070, 1320
KpnI GGTACC 1 cut(s) 411
Kzo9I GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
LmnI GCTCC 3 cut(s) 212, 295, 611
Lsp1109I GCAGC 7 cut(s) 99, 434, 611, 712, 740, 757, 823
LweI GCATC 4 cut(s) 434, 551, 859, 1128
MaeI CTAG 3 cut(s) 323, 716, 809
MaeIII GTNAC 1 cut(s) 532
MalI GATC 6 cut(s) 196, 200, 234, 521, 923, 1314
MboI GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
MboII GAAGA 9 cut(s) 18, 28, 144, 150, 499, 980, 1069, 1160, 1222
MhlI GDGCHC 2 cut(s) 217, 300
MlsI TGGCCA 1 cut(s) 366
MluCI AATT 4 cut(s) 433, 907, 1153, 1225
MluNI TGGCCA 1 cut(s) 366
MlyI GAGTC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 190
Mox20I TGGCCA 1 cut(s) 366
MscI TGGCCA 1 cut(s) 366
MseI TTAA 2 cut(s) 440, 902
MslI CAYNNNNRTG 2 cut(s) 817, 917
Msp20I TGGCCA 1 cut(s) 366
MspA1I CMGCKG 2 cut(s) 602, 770
MspI CCGG 1 cut(s) 735
MspR9I CCNGG 3 cut(s) 253, 538, 740
MvaI CCWGG 3 cut(s) 253, 538, 740
MvnI CGCG 1 cut(s) 1001
NdeII GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
NlaIII CATG 9 cut(s) 322, 371, 402, 415, 530, 681, 922, 1070, 1320
NlaIV GGNNCC 2 cut(s) 214, 409
NmuCI GTSAC 1 cut(s) 532
NruI TCGCGA 1 cut(s) 1001
NspI RCATGY 2 cut(s) 322, 402
NspV TTCGAA 1 cut(s) 103
PaeI GCATGC 1 cut(s) 322
PciI ACATGT 1 cut(s) 398
PfeI GAWTC 3 cut(s) 170, 661, 980
PkrI GCNGC 9 cut(s) 98, 114, 226, 424, 601, 727, 730, 772, 838
Ple19I CGATCG 2 cut(s) 197, 201
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 3 cut(s) 251, 536, 738
PspFI CCCAGC 1 cut(s) 766
PspGI CCWGG 3 cut(s) 251, 536, 738
PspN4I GGNNCC 2 cut(s) 214, 409
PspPI GGNCC 3 cut(s) 255, 268, 805
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 428
PvuI CGATCG 2 cut(s) 197, 201
PvuII CAGCTG 2 cut(s) 602, 770
RruI TCGCGA 1 cut(s) 1001
RsaI GTAC 2 cut(s) 409, 1039
RsaNI GTAC 2 cut(s) 408, 1038
RseI CAYNNNNRTG 2 cut(s) 817, 917
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 440, 902
SatI GCNGC 9 cut(s) 97, 113, 225, 423, 600, 726, 729, 771, 837
Sau3AI GATC 6 cut(s) 194, 198, 232, 519, 921, 1312
Sau96I GGNCC 3 cut(s) 255, 268, 805
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 3 cut(s) 253, 538, 740
SduI GDGCHC 2 cut(s) 217, 300
SfaNI GCATC 4 cut(s) 434, 551, 859, 1128
SfcI CTRYAG 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 817, 917
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SphI GCATGC 1 cut(s) 322
Sse9I AATT 4 cut(s) 433, 907, 1153, 1225
SsiI CCGC 7 cut(s) 72, 84, 96, 224, 271, 710, 1117
SspMI CTAG 3 cut(s) 323, 716, 809
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 251, 536, 738
TaaI ACNGT 3 cut(s) 895, 1037, 1281
TaqI TCGA 5 cut(s) 14, 103, 197, 201, 1220
TasI AATT 4 cut(s) 433, 907, 1153, 1225
TauI GCSGC 2 cut(s) 99, 227
TfiI GAWTC 3 cut(s) 170, 661, 980
Tru1I TTAA 2 cut(s) 440, 902
Tru9I TTAA 2 cut(s) 440, 902
TscAI CASTG 3 cut(s) 290, 571, 675
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 7 cut(s) 112, 422, 599, 725, 728, 770, 836
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 3 cut(s) 491, 1055, 1167
TspGWI ACGGA 1 cut(s) 1222
TspRI CASTG 3 cut(s) 290, 571, 675
XapI RAATTY 2 cut(s) 1153, 1225
XceI RCATGY 2 cut(s) 322, 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 3 cut(s) 323, 716, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.