pycom16g00580

Domain of unknown function (DUF3067)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0007081
Physical Location & Seq
Reverse (-)
353741 .. 354200
460 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGTGGAAGTATATGGAGCAGGTATCCAAATTCTTACTCAACAAATTTGAAAAACTTCTTGTTGGAACAAGCAACATATCATCACGAATCACGTATCTCGCTAGTATAACACGTCTGCAATGGGAACTGATACGAATTGAGCTAATCCGAATCCAAAATTTCCTTCAGAGATCGTTTCCACTGACGGAAGAAGAGTATCTGTTGAGGCTCGACGATGTTGCAAACACGTTGAAATGCTGGGGAGCTGTGTCTCATATCCGAAACAGCCTAGCAACGGTGAAAGAGAGGCCTCGGATAGGAAAGGCAGTTAGCATTTTCATAGACATGGATGAGTCTGGAGGGCGTGCAAATGAATGGATTTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3067

Protein Analysis

123

Amino Acids

14.35

Weight (kDa)

9.37

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3067 PF11267 53 - 120 2.8e-19 Domain of unknown function (DUF3067)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 10
AcsI RAATTY 3 cut(s) 29, 44, 157
AcuI CTGAAG 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 274, 296
AflIII ACRYGT 2 cut(s) 110, 225
AgsI TTSAA 2 cut(s) 50, 232
AjiI CACGTC 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 2 cut(s) 142, 245
AluI AGCT 2 cut(s) 142, 245
Alw26I GTCTC 1 cut(s) 255
AoxI GGCC 1 cut(s) 287
ApoI RAATTY 3 cut(s) 29, 44, 157
Asp700I GAANNNNTTC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciVI GTATCC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 2 cut(s) 102, 269
BfuAI ACCTGC 1 cut(s) 10
BfuI GTATCC 1 cut(s) 34
BmgBI CACGTC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 296
Bse3DI GCAATG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 274, 296
BseMI GCAATG 1 cut(s) 125
BseYI CCCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 274, 296
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 170
BspANI GGCC 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 170
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 289
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 179
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 345
CviAII CATG 1 cut(s) 325
CviJI RGCY 5 cut(s) 142, 208, 245, 267, 289
CviKI_1 RGCY 5 cut(s) 142, 208, 245, 267, 289
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 294
FaeI CATG 1 cut(s) 328
FaiI YATR 7 cut(s) 12, 14, 77, 107, 255, 320, 326
FatI CATG 1 cut(s) 324
FokI GGATG 1 cut(s) 341
FspBI CTAG 2 cut(s) 102, 269
GsaI CCCAGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 289
Hin1II CATG 1 cut(s) 328
HinfI GANTC 3 cut(s) 87, 150, 332
HphI GGTGA 1 cut(s) 289
Hpy188I TCNGA 4 cut(s) 149, 168, 260, 294
Hpy188III TCNNGA 2 cut(s) 84, 336
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 3 cut(s) 92, 112, 227
HpyCH4V TGCA 3 cut(s) 118, 221, 347
HpySE526I ACGT 3 cut(s) 92, 112, 227
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 16, 242
LpnPI CCDG 3 cut(s) 5, 223, 321
MaeI CTAG 2 cut(s) 102, 269
MaeII ACGT 3 cut(s) 92, 112, 227
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 2 cut(s) 200, 203
MluCI AATT 4 cut(s) 29, 44, 135, 157
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 4 cut(s) 198, 279, 300, 332
MroXI GAANNNNTTC 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 323
NdeII GATC 1 cut(s) 170
NlaIII CATG 1 cut(s) 328
PceI AGGCCT 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 87, 150
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Ppu21I YACGTR 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 323
Sau3AI GATC 1 cut(s) 170
SchI GAGTC 1 cut(s) 341
SetI ASST 6 cut(s) 24, 95, 115, 144, 230, 247
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 4 cut(s) 29, 44, 135, 157
SseBI AGGCCT 1 cut(s) 289
SspMI CTAG 2 cut(s) 102, 269
StuI AGGCCT 1 cut(s) 289
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 3 cut(s) 95, 115, 230
TaqI TCGA 1 cut(s) 210
TasI AATT 4 cut(s) 29, 44, 135, 157
TfiI GAWTC 2 cut(s) 87, 150
TscAI CASTG 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 307, 366
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 3 cut(s) 29, 44, 157
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 2 cut(s) 102, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.