Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009102

Physical Location & Seq

Genomic Coordinates Forward (+)

1725314 .. 1725775

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCAGCAACTTCACTCATTTCTTCTTCTTCTTGCTCCAACATTCTTTCATTTAATCCGATTTCCAGCACGACCCGAAACCAAAAGCGGAAGGTTTCTTCAACTAGGGTTTTTGCATCGAGCAGAAAAGGAGGTGATCATGCAGACCAGTACTACGAAAACTACAGCAGCAGGCTAGTGGACGAGAGCATGATTGTTCTCCGGAAGAGAGTTCACGAAATGAAGATGGTGGAGAGAAACTACGAGCCTCCGTCGGATTGGATGGACTGGGAGAAGCGATATTACACCACCTACGATTCGTTTATATGCCAAGTCATGGGCTTCTTGCAGTCCCACTTGATGGACACAAGGCCAAGTTTTGCTTTGGCATTCTTGGCTTTGGTCGTTTTGAGCGTGCCTACTTCAACGCTTATGGTTTTCTTCCAACTTTTGGAGCTCGCAAAGGGGGTCGGTCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.51

Weight (kDa)

8.93

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15010 AT2G01300
fragaria_vesca	FvH4_4g32180
malus_domestica	MD09G1259700.v1.1 MD13G1027500.v1.1 MD16G1030600.v1.1
prunus_persica	Prupe.1G322400_v2.0.a1 Prupe.3G151400_v2.0.a1
pyrus_communis	pycom09g17440 pycom13g02620 pycom16g02670
rosa_chinensis	RchiOBHm_Chr4g0440921
rosa_laevigata	RLG00000006140
rosa_multiflora	Rmu_sc0000424.1_g000022 Rmu_sc0005054.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381780
rosa_rugosa	Rorug04G0329200
rosa_samantha	Rh4AG381100 Rh4BG394300 Rh4CG409200 Rh4DG387600
rosa_wichuraiana	Rw4G032820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	316, 340, 430
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	316, 340, 430
AgsI	TTSAA	2 cut(s)	102, 405
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw21I	GWGCWC	1 cut(s)	438
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	5, 168
AsuHPI	GGTGA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	438
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	17, 180
BccI	CCATC	3 cut(s)	220, 256, 334
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	3 cut(s)	105, 176, 460
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	6, 169
BlsI	GCNGC	2 cut(s)	7, 170
BmcAI	AGTACT	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	125
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 340, 430
Bse1I	ACTGG	2 cut(s)	148, 272
BseAI	TCCGGA	1 cut(s)	201
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	316, 340, 430
BseNI	ACTGG	2 cut(s)	148, 272
BseXI	GCAGC	2 cut(s)	17, 180
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	316, 340, 430
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	148, 272
BssMI	GATC	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	173, 395, 438
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	17, 180
BstV2I	GAAGAC	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	173, 395, 438
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	140, 190, 316
CviJI	RGCY	6 cut(s)	175, 247, 321, 352, 377, 436
CviKI_1	RGCY	6 cut(s)	175, 247, 321, 352, 377, 436
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	3 cut(s)	143, 193, 319
FaiI	YATR	6 cut(s)	141, 191, 305, 307, 317, 413
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	139, 189, 315
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	6, 169
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	6, 169
FspBI	CTAG	3 cut(s)	105, 176, 460
GluI	GCNGC	2 cut(s)	6, 169
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	3 cut(s)	143, 193, 319
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	181, 214
Hpy188I	TCNGA	2 cut(s)	60, 256
Hpy188III	TCNNGA	2 cut(s)	202, 215
Hpy8I	GTNNAC	2 cut(s)	181, 214
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	116, 143, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	143, 193, 319
Kpn2I	TCCGGA	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	41, 433
LpnPI	CCDG	5 cut(s)	79, 157, 161, 215, 253
Lsp1109I	GCAGC	2 cut(s)	17, 180
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	3 cut(s)	105, 176, 460
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	8 cut(s)	15, 18, 21, 90, 217, 235, 412, 446
MhlI	GDGCHC	1 cut(s)	438
MmeI	TCCRAC	3 cut(s)	63, 234, 448
MnlI	CCTC	2 cut(s)	125, 258
MroI	TCCGGA	1 cut(s)	201
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	143, 193, 319
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	3 cut(s)	316, 340, 430
PkrI	GCNGC	2 cut(s)	7, 170
Psp124BI	GAGCTC	1 cut(s)	438
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	6, 169
Sau3AI	GATC	1 cut(s)	136
ScaI	AGTACT	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	4 cut(s)	96, 136, 293, 438
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	1 cut(s)	163
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	3 cut(s)	105, 176, 460
SstI	GAGCTC	1 cut(s)	438
TaqI	TCGA	1 cut(s)	119
TaqII	GACCGA	1 cut(s)	440
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	2 cut(s)	5, 168
TspDTI	ATGAA	2 cut(s)	39, 236
TspGWI	ACGGA	1 cut(s)	240
Van91I	CCANNNNNTGG	3 cut(s)	316, 340, 430
XspI	CTAG	3 cut(s)	105, 176, 460
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.