Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004435

Physical Location & Seq

Genomic Coordinates Reverse (-)

5174103 .. 5175053

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGATCTTCTCCGAGCATACTCTGATCAAAACGACGACGAATTGAACGAGCCCGAGGAGCAGAACCAAAACCCTAAATCCGCACCGTCGTCCCCAGACTCGTCGCCGCCTCACCTCCTCCCCGCCAAGTCCGCCGCGCCCAATGTCGACGACACTATGCTGGCCCTGACGGTAGCCGGGGCCAACGGGTCTTCCACCCGCCCCATCGACCCGACCCAACACATCGTCGGCTTCAACCCCACCTACGAGCAGCTATGGGCACCAATCTACGGCCCGTCTCATCCTTACGCCAAGGATGGCATAGCCCAGGGGATGCGCAACCACAAACTCGGCTTCGTCGAGGACGCCTCCATTGAGCCCTTCGTGTTCGACGAGCAGTACAACACGTTTCACAAGTATGGGTATGCTGCTGACCCTTCGGCATCTGCTGGGTACAATTATGTAGGTGATTTCGAGGCCTTGCAGAAGAATGACGCCGTTTCTGTGTATAACATTCCCCAGCACGAGCAGAAGAAGCGGAAAATTGAAAAGAGAAAGGAATTGGAGGAGAATGAGGGTGGGGATGAGGATATGGACCCGGAGGAGGTCCAGAACCCGGCTAGTGACGTGTGGTTGATGAAGAATAAGAAGAGTCCGTGGGCGGGAAAGAAGGAGGGTCTGCCGACGGAGCTGACTGAGGAGCAGAAGAAGTATGCCGAGGAGTATGCGAAGAAGAAAGGTGAGGAGAAAGGCGCTGGTGATAAGGGCGAGGCTGTGGCTGAGAAGACTACGTTTCATGGAAAAGAAGAGAGGGATTATCAGGGTAGGTCATGGATTGCGCCGCCGAGAGATGCTAAGGCATCTAATGATCACTGTTATATTTTAGAGATCCAAAGAGGTTGGTGCACACTTGGAGCGGGCACACGAAGGGTGTGTCTGCTATTAGGTTCTTCCCTAAGTACGGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071007 GO:0071013 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

317

Amino Acids

35.09

Weight (kDa)

5.02

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10580
fragaria_vesca	FvH4_4g34510
malus_domestica	MD13G1091700.v1.1 MD16G1092300.v1.1
prunus_persica	Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.7G165100_v2.0.a1
pyrus_communis	pycom13g07960 pycom16g07870
rosa_chinensis	RchiOBHm_Chr4g0443891 RchiOBHm_Chr5g0051731 RchiOBHm_Chr5g0051741
rosa_laevigata	RLG00000005880 RLG00000006045
rosa_multiflora	Rmu_co8435535.1_g000001 Rmu_sc0010179.1_g000004 Rmu_sc0019062.1_g000007
rosa_roxburghii	Rroxscaffold_5G00384460
rosa_rugosa	Rorug04G0348100 Rorug05G0277100.1
rosa_samantha	Rh4AG408600 Rh4BG419700 Rh4CG433700 Rh4DG414700 Rh5AG349300 Rh5BG360800 Rh5BG360900 Rh5CG385500 Rh5DG375700
rosa_wichuraiana	Rw4G035090 Rw5G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	259
AccBSI	CCGCTC	1 cut(s)	896
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	137
AclWI	GGATC	2 cut(s)	12, 862
AcyI	GRCGYC	2 cut(s)	345, 474
AfaI	GTAC	3 cut(s)	380, 434, 940
AfiI	CCNNNNNNNGG	5 cut(s)	269, 583, 595, 641, 940
AflIII	ACRYGT	2 cut(s)	384, 606
AgsI	TTSAA	3 cut(s)	46, 235, 527
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	253, 670
AluI	AGCT	2 cut(s)	253, 670
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	1 cut(s)	282
Alw44I	GTGCAC	1 cut(s)	883
AlwI	GGATC	2 cut(s)	12, 862
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	4 cut(s)	162, 180, 271, 456
ApaLI	GTGCAC	1 cut(s)	883
ApeKI	GCWGC	2 cut(s)	250, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
AspLEI	GCGC	4 cut(s)	139, 318, 734, 820
AspS9I	GGNCC	5 cut(s)	163, 180, 272, 574, 586
AsuC2I	CCSGG	3 cut(s)	178, 578, 596
AsuHPI	GGTGA	4 cut(s)	104, 458, 731, 749
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	574, 586
BaeGI	GKGCMC	3 cut(s)	262, 887, 902
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	54, 360
BauI	CACGAG	1 cut(s)	503
BbsI	GAAGAC	2 cut(s)	183, 770
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	2 cut(s)	262, 394
BccI	CCATC	2 cut(s)	212, 290
BceAI	ACGGC	2 cut(s)	286, 461
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	1 cut(s)	308
BclI	TGATCA	2 cut(s)	25, 847
BcnI	CCSGG	3 cut(s)	178, 578, 596
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	735
BisI	GCNGC	5 cut(s)	107, 135, 251, 408, 821
BlsI	GCNGC	5 cut(s)	108, 136, 252, 409, 822
Bme1390I	CCNGG	4 cut(s)	178, 308, 578, 596
Bme18I	GGWCC	2 cut(s)	574, 586
BmeT110I	CYCGRG	1 cut(s)	53
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	5 cut(s)	163, 180, 272, 574, 586
BmiI	GGNNCC	3 cut(s)	181, 261, 576
BmrFI	CCNGG	4 cut(s)	178, 308, 578, 596
BmsI	GCATC	4 cut(s)	303, 431, 820, 848
BpiI	GAAGAC	2 cut(s)	183, 770
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
Bpu10I	CCTNAGC	1 cut(s)	834
BpuMI	CCSGG	3 cut(s)	178, 578, 596
BsaHI	GRCGYC	2 cut(s)	345, 474
BsaJI	CCNNGG	7 cut(s)	54, 177, 291, 306, 307, 635, 696
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 583, 595, 641, 940
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	7 cut(s)	54, 177, 291, 306, 307, 635, 696
BseGI	GGATG	4 cut(s)	280, 301, 318, 568
BseLI	CCNNNNNNNGG	5 cut(s)	269, 583, 595, 641, 940
BseMII	CTCAG	2 cut(s)	666, 750
BseRI	GAGGAG	7 cut(s)	71, 107, 560, 596, 692, 713, 737
BseSI	GKGCMC	3 cut(s)	262, 887, 902
BseXI	GCAGC	2 cut(s)	262, 394
BseYI	CCCAGC	2 cut(s)	428, 498
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	4 cut(s)	164, 182, 273, 458
BshNI	GGYRCC	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	887
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	177, 578, 596
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	5 cut(s)	269, 583, 595, 641, 940
BsmAI	GTCTC	1 cut(s)	282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	4 cut(s)	164, 182, 273, 458
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	5 cut(s)	54, 262, 360, 887, 902
Bsp143I	GATC	4 cut(s)	4, 25, 847, 867
BspANI	GGCC	4 cut(s)	164, 182, 273, 458
BspCNI	CTCAG	2 cut(s)	667, 751
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	3 cut(s)	181, 261, 576
BspPI	GGATC	2 cut(s)	12, 862
BspT107I	GGYRCC	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	896
BssECI	CCNNGG	7 cut(s)	54, 177, 291, 306, 307, 635, 696
BssMI	GATC	4 cut(s)	4, 25, 847, 867
BssNI	GRCGYC	2 cut(s)	345, 474
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	3 cut(s)	87, 172, 854
Bst6I	CTCTTC	2 cut(s)	623, 780
BstACI	GRCGYC	2 cut(s)	345, 474
BstC8I	GCNNGC	2 cut(s)	162, 898
BstDEI	CTNAG	4 cut(s)	675, 759, 834, 935
BstDSI	CCRYGG	1 cut(s)	635
BstF5I	GGATG	4 cut(s)	280, 301, 318, 568
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	735
BstHHI	GCGC	4 cut(s)	139, 318, 734, 820
BstKTI	GATC	4 cut(s)	7, 28, 850, 870
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	4 cut(s)	4, 25, 847, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 131, 514, 667
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	4 cut(s)	176, 306, 576, 594
BstSLI	GKGCMC	3 cut(s)	262, 887, 902
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	262, 394
BstV2I	GAAGAC	2 cut(s)	183, 770
BstX2I	RGATCY	2 cut(s)	4, 867
BstYI	RGATCY	2 cut(s)	4, 867
BsuRI	GGCC	4 cut(s)	164, 182, 273, 458
BtgI	CCRYGG	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	4 cut(s)	280, 301, 318, 568
BtsIMutI	CAGTG	1 cut(s)	850
Cac8I	GCNNGC	2 cut(s)	162, 898
CfoI	GCGC	4 cut(s)	139, 318, 734, 820
Cfr13I	GGNCC	5 cut(s)	163, 180, 272, 574, 586
CseI	GACGC	2 cut(s)	353, 482
Csp6I	GTAC	3 cut(s)	379, 433, 939
CviAII	CATG	2 cut(s)	776, 810
CviQI	GTAC	3 cut(s)	379, 433, 939
DdeI	CTNAG	4 cut(s)	675, 759, 834, 935
DpnI	GATC	4 cut(s)	6, 27, 849, 869
DpnII	GATC	4 cut(s)	4, 25, 847, 867
Eam1104I	CTCTTC	2 cut(s)	623, 780
EarI	CTCTTC	2 cut(s)	623, 780
EciI	GGCGGA	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	2 cut(s)	54, 360
Eco47I	GGWCC	2 cut(s)	574, 586
Eco88I	CYCGRG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	2 cut(s)	54, 360
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	779, 813
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	775, 809
FauI	CCCGC	4 cut(s)	130, 206, 634, 889
FbaI	TGATCA	2 cut(s)	25, 847
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	5 cut(s)	107, 135, 251, 408, 821
FokI	GGATG	4 cut(s)	267, 308, 325, 575
FriOI	GRGCYC	2 cut(s)	54, 360
Fsp4HI	GCNGC	5 cut(s)	107, 135, 251, 408, 821
FspBI	CTAG	1 cut(s)	600
FspI	TGCGCA	1 cut(s)	317
GlaI	GCGC	4 cut(s)	138, 317, 733, 819
GluI	GCNGC	5 cut(s)	107, 135, 251, 408, 821
GsaI	CCCAGC	2 cut(s)	432, 502
HaeII	RGCGCY	1 cut(s)	735
HaeIII	GGCC	4 cut(s)	164, 182, 273, 458
HapII	CCGG	3 cut(s)	177, 578, 596
HgaI	GACGC	2 cut(s)	353, 482
HhaI	GCGC	4 cut(s)	139, 318, 734, 820
Hin1I	GRCGYC	2 cut(s)	345, 474
Hin1II	CATG	2 cut(s)	779, 813
Hin6I	GCGC	4 cut(s)	137, 316, 732, 818
HinP1I	GCGC	4 cut(s)	137, 316, 732, 818
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	98, 631
HpaII	CCGG	3 cut(s)	177, 578, 596
HphI	GGTGA	4 cut(s)	104, 458, 731, 749
Hpy166II	GTNNAC	2 cut(s)	148, 885
Hpy188I	TCNGA	2 cut(s)	14, 25
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	2 cut(s)	148, 885
Hpy99I	CGWCG	9 cut(s)	38, 41, 91, 106, 152, 230, 341, 374, 667
HpyAV	CCTTC	4 cut(s)	370, 426, 643, 900
HpyCH4III	ACNGT	3 cut(s)	87, 172, 854
HpyCH4IV	ACGT	3 cut(s)	386, 606, 770
HpyCH4V	TGCA	2 cut(s)	463, 885
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 131, 514, 667
HpyF3I	CTNAG	4 cut(s)	675, 759, 834, 935
HpySE526I	ACGT	3 cut(s)	386, 606, 770
Hsp92I	GRCGYC	2 cut(s)	345, 474
Hsp92II	CATG	2 cut(s)	779, 813
HspAI	GCGC	4 cut(s)	137, 316, 732, 818
Ksp22I	TGATCA	2 cut(s)	25, 847
Kzo9I	GATC	4 cut(s)	4, 25, 847, 867
LmnI	GCTCC	4 cut(s)	58, 667, 679, 893
Lsp1109I	GCAGC	2 cut(s)	262, 394
LweI	GCATC	4 cut(s)	303, 431, 820, 848
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	3 cut(s)	386, 606, 770
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	4 cut(s)	6, 27, 849, 869
MbiI	CCGCTC	1 cut(s)	896
MboI	GATC	4 cut(s)	4, 25, 847, 867
MflI	RGATCY	2 cut(s)	4, 867
MhlI	GDGCHC	5 cut(s)	54, 262, 360, 887, 902
MluCI	AATT	4 cut(s)	41, 436, 522, 539
MlyI	GAGTC	2 cut(s)	92, 640
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	3 cut(s)	177, 578, 596
MspR9I	CCNGG	4 cut(s)	178, 308, 578, 596
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	58, 131, 514, 667
NciI	CCSGG	3 cut(s)	178, 578, 596
NdeII	GATC	4 cut(s)	4, 25, 847, 867
NlaIII	CATG	2 cut(s)	779, 813
NlaIV	GGNNCC	3 cut(s)	181, 261, 576
NmeAIII	GCCGAG	3 cut(s)	309, 721, 849
NmuCI	GTSAC	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	317
PasI	CCCWGGG	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 336, 369
PkrI	GCNGC	5 cut(s)	108, 136, 252, 409, 822
PleI	GAGTC	2 cut(s)	92, 639
PpsI	GAGTC	2 cut(s)	92, 639
Psp6I	CCWGG	1 cut(s)	306
PspFI	CCCAGC	2 cut(s)	428, 498
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	181, 261, 576
PspPI	GGNCC	5 cut(s)	163, 180, 272, 574, 586
PsuI	RGATCY	2 cut(s)	4, 867
RsaI	GTAC	3 cut(s)	380, 434, 940
RsaNI	GTAC	3 cut(s)	379, 433, 939
RseI	CAYNNNNRTG	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	5 cut(s)	107, 135, 251, 408, 821
Sau3AI	GATC	4 cut(s)	4, 25, 847, 867
Sau96I	GGNCC	5 cut(s)	163, 180, 272, 574, 586
SchI	GAGTC	2 cut(s)	92, 640
ScrFI	CCNGG	4 cut(s)	178, 308, 578, 596
SduI	GDGCHC	5 cut(s)	54, 262, 360, 887, 902
SfaNI	GCATC	4 cut(s)	303, 431, 820, 848
SinI	GGWCC	2 cut(s)	574, 586
SmiMI	CAYNNNNRTG	1 cut(s)	396
Sse9I	AATT	4 cut(s)	41, 436, 522, 539
SseBI	AGGCCT	1 cut(s)	458
SspMI	CTAG	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	4 cut(s)	176, 306, 576, 594
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	87, 172, 854
TaiI	ACGT	3 cut(s)	389, 609, 773
TaqI	TCGA	5 cut(s)	147, 207, 339, 369, 453
TasI	AATT	4 cut(s)	41, 436, 522, 539
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	3 cut(s)	109, 137, 823
TscAI	CASTG	1 cut(s)	857
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	2 cut(s)	250, 407
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	2 cut(s)	632, 764
TspGWI	ACGGA	2 cut(s)	624, 680
TspRI	CASTG	1 cut(s)	857
VneI	GTGCAC	1 cut(s)	883
VpaK11BI	GGWCC	2 cut(s)	574, 586
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.