DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06480 AT3G06480 |
| fragaria_vesca | FvH4_4g21040 |
| malus_domestica | MD13G1145900.v1.1 MD16G1139800.v1.1 MD16G1139900.v1.1 |
| prunus_persica | Prupe.1G109600_v2.0.a1 |
| pyrus_communis | pycom13g12540 pycom16g12400 |
| rosa_chinensis | RchiOBHm_Chr2g0174651 RchiOBHm_Chr4g0426571 |
| rosa_laevigata | RLG00000007289 |
| rosa_multiflora | Rmu_co8268839.1_g000001 Rmu_sc0001821.1_g000009 Rmu_sc0007189.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00368580 |
| rosa_rugosa | Rorug04G0213500 |
| rosa_samantha | Rh4AG268700 Rh4BG275000 Rh4CG289300 Rh4DG271800 |
| rosa_wichuraiana | Rw2G054030 Rw4G023310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3293 |
| Acc36I | ACCTGC | 1 cut(s) | 1360 |
| AccIII | TCCGGA | 1 cut(s) | 2235 |
| AclWI | GGATC | 6 cut(s) | 38, 1887, 2071, 2079, 3224, 3237 |
| AcoI | YGGCCR | 4 cut(s) | 1457, 2599, 2797, 2929 |
| AcsI | RAATTY | 2 cut(s) | 1646, 3215 |
| AcvI | CACGTG | 2 cut(s) | 1677, 3206 |
| AflIII | ACRYGT | 1 cut(s) | 3205 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1065, 3111 |
| AhlI | ACTAGT | 1 cut(s) | 1286 |
| AjiI | CACGTC | 1 cut(s) | 2942 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1848, 1880 |
| Alw21I | GWGCWC | 2 cut(s) | 1228, 1696 |
| Alw26I | GTCTC | 5 cut(s) | 1286, 1295, 2205, 2208, 3372 |
| AlwI | GGATC | 6 cut(s) | 38, 1887, 2071, 2079, 3224, 3237 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 890, 2080 |
| Aor13HI | TCCGGA | 1 cut(s) | 2235 |
| ApaI | GGGCCC | 2 cut(s) | 1706, 2777 |
| ApoI | RAATTY | 2 cut(s) | 1646, 3215 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1835, 1867, 3139, 3171 |
| AspA2I | CCTAGG | 1 cut(s) | 2777 |
| AspLEI | GCGC | 3 cut(s) | 37, 628, 2384 |
| AsuC2I | CCSGG | 2 cut(s) | 462, 724 |
| AsuHPI | GGTGA | 6 cut(s) | 893, 1264, 1287, 1352, 2219, 2345 |
| AsuII | TTCGAA | 1 cut(s) | 3025 |
| AvaII | GGWCC | 7 cut(s) | 23, 771, 937, 1067, 2858, 3105, 3129 |
| AvrII | CCTAGG | 1 cut(s) | 2777 |
| AxyI | CCTNAGG | 1 cut(s) | 252 |
| BaeGI | GKGCMC | 2 cut(s) | 1706, 2777 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2905, 2938 |
| BalI | TGGCCA | 1 cut(s) | 1459 |
| BamHI | GGATCC | 1 cut(s) | 3229 |
| BanII | GRGCYC | 5 cut(s) | 380, 1696, 1706, 2777, 3176 |
| BauI | CACGAG | 1 cut(s) | 2280 |
| BbrPI | CACGTG | 2 cut(s) | 1677, 3206 |
| BbsI | GAAGAC | 2 cut(s) | 1380, 2349 |
| Bbv12I | GWGCWC | 2 cut(s) | 1228, 1696 |
| BbvCI | CCTCAGC | 2 cut(s) | 1071, 1707 |
| BceAI | ACGGC | 4 cut(s) | 2586, 2916, 2991, 3057 |
| BciVI | GTATCC | 1 cut(s) | 3355 |
| BclI | TGATCA | 1 cut(s) | 2140 |
| BcnI | CCSGG | 2 cut(s) | 462, 724 |
| BcoDI | GTCTC | 5 cut(s) | 1286, 1295, 2205, 2208, 3372 |
| BcuI | ACTAGT | 1 cut(s) | 1286 |
| BfaI | CTAG | 5 cut(s) | 918, 1287, 1662, 2778, 3356 |
| BfmI | CTRYAG | 1 cut(s) | 3001 |
| BfuAI | ACCTGC | 1 cut(s) | 1360 |
| BfuI | GTATCC | 1 cut(s) | 3355 |
| BlnI | CCTAGG | 1 cut(s) | 2777 |
| Bme18I | GGWCC | 7 cut(s) | 23, 771, 937, 1067, 2858, 3105, 3129 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1065, 3111 |
| BmgBI | CACGTC | 1 cut(s) | 2942 |
| BmrI | ACTGGG | 7 cut(s) | 124, 494, 777, 2227, 2379, 2397, 3171 |
| BmuI | ACTGGG | 7 cut(s) | 124, 494, 777, 2227, 2379, 2397, 3171 |
| BpiI | GAAGAC | 2 cut(s) | 1380, 2349 |
| BpmI | CTGGAG | 4 cut(s) | 1374, 2463, 2474, 3100 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1071, 1707 |
| Bpu14I | TTCGAA | 1 cut(s) | 3025 |
| BpuEI | CTTGAG | 1 cut(s) | 2187 |
| BpuMI | CCSGG | 2 cut(s) | 462, 724 |
| BsaAI | YACGTR | 4 cut(s) | 1677, 2153, 2504, 3206 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2532 |
| BsaI | GGTCTC | 1 cut(s) | 3372 |
| BsaWI | WCCGGW | 2 cut(s) | 2235, 2594 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1210, 1240, 3073, 3079, 3103, 3109, 3163, 3193 |
| Bse118I | RCCGGY | 2 cut(s) | 16, 142 |
| Bse21I | CCTNAGG | 1 cut(s) | 252 |
| Bse3DI | GCAATG | 1 cut(s) | 951 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2532 |
| BseAI | TCCGGA | 1 cut(s) | 2235 |
| BseGI | GGATG | 9 cut(s) | 262, 457, 523, 719, 853, 2623, 2656, 2689, 2788 |
| BseJI | GATNNNNATC | 1 cut(s) | 2532 |
| BseMI | GCAATG | 1 cut(s) | 951 |
| BseMII | CTCAG | 6 cut(s) | 266, 1085, 1586, 1721, 2072, 2403 |
| BseRI | GAGGAG | 2 cut(s) | 26, 3390 |
| BseSI | GKGCMC | 2 cut(s) | 1706, 2777 |
| BseX3I | CGGCCG | 1 cut(s) | 2797 |
| BseYI | CCCAGC | 1 cut(s) | 940 |
| BsgI | GTGCAG | 2 cut(s) | 773, 1338 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2767, 2800 |
| BsiEI | CGRYCG | 2 cut(s) | 2767, 2800 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1228, 1696 |
| BsiSI | CCGG | 8 cut(s) | 17, 143, 461, 724, 2236, 2595, 3055, 3121 |
| BsmAI | GTCTC | 5 cut(s) | 1286, 1295, 2205, 2208, 3372 |
| BsmI | GAATGC | 4 cut(s) | 570, 662, 1538, 1842 |
| Bso31I | GGTCTC | 1 cut(s) | 3372 |
| Bsp119I | TTCGAA | 1 cut(s) | 3025 |
| Bsp120I | GGGCCC | 2 cut(s) | 1702, 2773 |
| Bsp1286I | GDGCHC | 6 cut(s) | 380, 1228, 1696, 1706, 2777, 3176 |
| Bsp13I | TCCGGA | 1 cut(s) | 2235 |
| Bsp1407I | TGTACA | 3 cut(s) | 1206, 1911, 1972 |
| BspCNI | CTCAG | 6 cut(s) | 265, 1084, 1585, 1720, 2073, 2404 |
| BspEI | TCCGGA | 1 cut(s) | 2235 |
| BspHI | TCATGA | 1 cut(s) | 997 |
| BspMI | ACCTGC | 1 cut(s) | 1360 |
| BspPI | GGATC | 6 cut(s) | 38, 1887, 2071, 2079, 3224, 3237 |
| BspQI | GCTCTTC | 1 cut(s) | 1473 |
| BspT104I | TTCGAA | 1 cut(s) | 3025 |
| BspTNI | GGTCTC | 1 cut(s) | 3372 |
| BsrDI | GCAATG | 1 cut(s) | 951 |
| BsrFI | RCCGGY | 2 cut(s) | 16, 142 |
| BsrGI | TGTACA | 3 cut(s) | 1206, 1911, 1972 |
| BssAI | RCCGGY | 2 cut(s) | 16, 142 |
| BssSI | CACGAG | 1 cut(s) | 2280 |
| BssT1I | CCWWGG | 2 cut(s) | 580, 2777 |
| Bst2BI | CACGAG | 1 cut(s) | 2280 |
| Bst6I | CTCTTC | 1 cut(s) | 1473 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 271, 451, 610, 1223 |
| BstAUI | TGTACA | 3 cut(s) | 1206, 1911, 1972 |
| BstBAI | YACGTR | 4 cut(s) | 1677, 2153, 2504, 3206 |
| BstBI | TTCGAA | 1 cut(s) | 3025 |
| BstDEI | CTNAG | 8 cut(s) | 252, 1071, 1550, 1572, 1707, 2081, 2103, 2412 |
| BstDSI | CCRYGG | 5 cut(s) | 26, 62, 1012, 2932, 3321 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 579 |
| BstF5I | GGATG | 9 cut(s) | 262, 457, 523, 719, 853, 2623, 2656, 2689, 2788 |
| BstHHI | GCGC | 3 cut(s) | 37, 628, 2384 |
| BstMAI | GTCTC | 5 cut(s) | 1286, 1295, 2205, 2208, 3372 |
| BstMCI | CGRYCG | 2 cut(s) | 2767, 2800 |
| BstNSI | RCATGY | 3 cut(s) | 850, 2713, 2746 |
| BstSFI | CTRYAG | 1 cut(s) | 3001 |
| BstSLI | GKGCMC | 2 cut(s) | 1706, 2777 |
| BstV2I | GAAGAC | 2 cut(s) | 1380, 2349 |
| BstX2I | RGATCY | 3 cut(s) | 2076, 2084, 3229 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 63, 911, 3322 |
| BstYI | RGATCY | 3 cut(s) | 2076, 2084, 3229 |
| BstZI | CGGCCG | 1 cut(s) | 2797 |
| Bsu36I | CCTNAGG | 1 cut(s) | 252 |
| BsuI | GTATCC | 1 cut(s) | 3355 |
| BtgI | CCRYGG | 5 cut(s) | 26, 62, 1012, 2932, 3321 |
| BtrI | CACGTC | 1 cut(s) | 2942 |
| BtsCI | GGATG | 9 cut(s) | 262, 457, 523, 719, 853, 2623, 2656, 2689, 2788 |
| BtsI | GCAGTG | 1 cut(s) | 2902 |
| BtsIMutI | CAGTG | 5 cut(s) | 632, 1377, 2265, 2902, 3342 |
| BveI | ACCTGC | 1 cut(s) | 1360 |
| CaiI | CAGNNNCTG | 2 cut(s) | 890, 2080 |
| CciI | TCATGA | 1 cut(s) | 997 |
| CfoI | GCGC | 3 cut(s) | 37, 628, 2384 |
| Cfr10I | RCCGGY | 2 cut(s) | 16, 142 |
| CseI | GACGC | 1 cut(s) | 2172 |
| CsiI | ACCWGGT | 1 cut(s) | 1153 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2254, 2289 |
| DdeI | CTNAG | 8 cut(s) | 252, 1071, 1550, 1572, 1707, 2081, 2103, 2412 |
| DraI | TTTAAA | 1 cut(s) | 2226 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3293 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1065, 3111 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3293 |
| EaeI | YGGCCR | 4 cut(s) | 1457, 2599, 2797, 2929 |
| EagI | CGGCCG | 1 cut(s) | 2797 |
| Eam1104I | CTCTTC | 1 cut(s) | 1473 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1065, 3111 |
| EarI | CTCTTC | 1 cut(s) | 1473 |
| EciI | GGCGGA | 2 cut(s) | 147, 3387 |
| Ecl136II | GAGCTC | 1 cut(s) | 1694 |
| EclXI | CGGCCG | 1 cut(s) | 2797 |
| Eco130I | CCWWGG | 2 cut(s) | 580, 2777 |
| Eco147I | AGGCCT | 2 cut(s) | 556, 1273 |
| Eco24I | GRGCYC | 5 cut(s) | 380, 1696, 1706, 2777, 3176 |
| Eco31I | GGTCTC | 1 cut(s) | 3372 |
| Eco47I | GGWCC | 7 cut(s) | 23, 771, 937, 1067, 2858, 3105, 3129 |
| Eco52I | CGGCCG | 1 cut(s) | 2797 |
| Eco53kI | GAGCTC | 1 cut(s) | 1694 |
| Eco72I | CACGTG | 2 cut(s) | 1677, 3206 |
| Eco81I | CCTNAGG | 1 cut(s) | 252 |
| EcoICRI | GAGCTC | 1 cut(s) | 1694 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 579 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1067, 1702, 1703, 2773, 2774 |
| EcoT14I | CCWWGG | 2 cut(s) | 580, 2777 |
| EcoT22I | ATGCAT | 3 cut(s) | 525, 549, 1200 |
| EcoT38I | GRGCYC | 5 cut(s) | 380, 1696, 1706, 2777, 3176 |
| ErhI | CCWWGG | 2 cut(s) | 580, 2777 |
| FauI | CCCGC | 3 cut(s) | 730, 1899, 2910 |
| FbaI | TGATCA | 1 cut(s) | 2140 |
| FokI | GGATG | 9 cut(s) | 269, 444, 510, 706, 840, 2630, 2663, 2696, 2795 |
| FriOI | GRGCYC | 5 cut(s) | 380, 1696, 1706, 2777, 3176 |
| FspBI | CTAG | 5 cut(s) | 918, 1287, 1662, 2778, 3356 |
| GlaI | GCGC | 3 cut(s) | 36, 627, 2383 |
| GsaI | CCCAGC | 1 cut(s) | 944 |
| GsuI | CTGGAG | 4 cut(s) | 1374, 2463, 2474, 3100 |
| HapII | CCGG | 8 cut(s) | 17, 143, 461, 724, 2236, 2595, 3055, 3121 |
| HgaI | GACGC | 1 cut(s) | 2172 |
| HhaI | GCGC | 3 cut(s) | 37, 628, 2384 |
| Hin6I | GCGC | 3 cut(s) | 35, 626, 2382 |
| HinP1I | GCGC | 3 cut(s) | 35, 626, 2382 |
| HincII | GTYRAC | 1 cut(s) | 1316 |
| HindII | GTYRAC | 1 cut(s) | 1316 |
| HindIII | AAGCTT | 1 cut(s) | 1082 |
| HpaII | CCGG | 8 cut(s) | 17, 143, 461, 724, 2236, 2595, 3055, 3121 |
| HphI | GGTGA | 6 cut(s) | 893, 1264, 1287, 1352, 2219, 2345 |
| Hpy166II | GTNNAC | 9 cut(s) | 26, 413, 596, 1207, 1316, 1914, 2317, 2353, 2945 |
| Hpy188I | TCNGA | 9 cut(s) | 354, 1098, 1575, 1698, 2145, 2413, 2538, 3099, 3171 |
| Hpy8I | GTNNAC | 9 cut(s) | 26, 413, 596, 1207, 1316, 1914, 2317, 2353, 2945 |
| HpyAV | CCTTC | 7 cut(s) | 61, 232, 867, 1049, 1693, 3220, 3393 |
| HpyCH4IV | ACGT | 9 cut(s) | 1676, 2031, 2152, 2271, 2503, 2584, 2941, 3205, 3278 |
| HpyF3I | CTNAG | 8 cut(s) | 252, 1071, 1550, 1572, 1707, 2081, 2103, 2412 |
| HpySE526I | ACGT | 9 cut(s) | 1676, 2031, 2152, 2271, 2503, 2584, 2941, 3205, 3278 |
| HspAI | GCGC | 3 cut(s) | 35, 626, 2382 |
| Kpn2I | TCCGGA | 1 cut(s) | 2235 |
| KroI | GCCGGC | 1 cut(s) | 16 |
| KroNI | GCCGGC | 1 cut(s) | 18 |
| Ksp22I | TGATCA | 1 cut(s) | 2140 |
| LguI | GCTCTTC | 1 cut(s) | 1473 |
| MabI | ACCWGGT | 1 cut(s) | 1153 |
| MaeI | CTAG | 5 cut(s) | 918, 1287, 1662, 2778, 3356 |
| MaeII | ACGT | 9 cut(s) | 1676, 2031, 2152, 2271, 2503, 2584, 2941, 3205, 3278 |
| MaeIII | GTNAC | 7 cut(s) | 124, 513, 869, 1046, 1327, 1340, 3134 |
| MboII | GAAGA | 9 cut(s) | 692, 752, 1385, 1460, 1538, 1795, 1949, 2354, 2376 |
| MfeI | CAATTG | 3 cut(s) | 416, 1461, 1491 |
| MflI | RGATCY | 3 cut(s) | 2076, 2084, 3229 |
| MhlI | GDGCHC | 6 cut(s) | 380, 1228, 1696, 1706, 2777, 3176 |
| MlsI | TGGCCA | 1 cut(s) | 1459 |
| MluNI | TGGCCA | 1 cut(s) | 1459 |
| MlyI | GAGTC | 4 cut(s) | 514, 3067, 3103, 3121 |
| MmeI | TCCRAC | 2 cut(s) | 3077, 3149 |
| Mox20I | TGGCCA | 1 cut(s) | 1459 |
| Mph1103I | ATGCAT | 3 cut(s) | 525, 549, 1200 |
| MroI | TCCGGA | 1 cut(s) | 2235 |
| MroNI | GCCGGC | 1 cut(s) | 16 |
| MscI | TGGCCA | 1 cut(s) | 1459 |
| MseI | TTAA | 9 cut(s) | 986, 1764, 1965, 1995, 2225, 2445, 2568, 3039, 3403 |
| MslI | CAYNNNNRTG | 4 cut(s) | 909, 1164, 1453, 1742 |
| Msp20I | TGGCCA | 1 cut(s) | 1459 |
| MspA1I | CMGCKG | 2 cut(s) | 202, 2435 |
| MspI | CCGG | 8 cut(s) | 17, 143, 461, 724, 2236, 2595, 3055, 3121 |
| MunI | CAATTG | 3 cut(s) | 416, 1461, 1491 |
| Mva1269I | GAATGC | 4 cut(s) | 570, 662, 1538, 1842 |
| NaeI | GCCGGC | 1 cut(s) | 18 |
| NciI | CCSGG | 2 cut(s) | 462, 724 |
| NgoMIV | GCCGGC | 1 cut(s) | 16 |
| NmeAIII | GCCGAG | 2 cut(s) | 2825, 2870 |
| NmuCI | GTSAC | 4 cut(s) | 513, 869, 1340, 3134 |
| NsiI | ATGCAT | 3 cut(s) | 525, 549, 1200 |
| NspI | RCATGY | 3 cut(s) | 850, 2713, 2746 |
| NspV | TTCGAA | 1 cut(s) | 3025 |
| PaeI | GCATGC | 2 cut(s) | 2713, 2746 |
| PagI | TCATGA | 1 cut(s) | 997 |
| PceI | AGGCCT | 2 cut(s) | 556, 1273 |
| PciSI | GCTCTTC | 1 cut(s) | 1473 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 233 |
| PctI | GAATGC | 4 cut(s) | 570, 662, 1538, 1842 |
| PdiI | GCCGGC | 1 cut(s) | 18 |
| PfeI | GAWTC | 8 cut(s) | 109, 349, 757, 1408, 2533, 2552, 2591, 3242 |
| PleI | GAGTC | 4 cut(s) | 513, 3066, 3102, 3120 |
| PmaCI | CACGTG | 2 cut(s) | 1677, 3206 |
| PmlI | CACGTG | 2 cut(s) | 1677, 3206 |
| PpsI | GAGTC | 4 cut(s) | 513, 3066, 3102, 3120 |
| Ppu21I | YACGTR | 4 cut(s) | 1677, 2153, 2504, 3206 |
| PpuMI | RGGWCCY | 1 cut(s) | 1067 |
| Psp124BI | GAGCTC | 1 cut(s) | 1696 |
| Psp5II | RGGWCCY | 1 cut(s) | 1067 |
| PspCI | CACGTG | 2 cut(s) | 1677, 3206 |
| PspFI | CCCAGC | 1 cut(s) | 940 |
| PspOMI | GGGCCC | 2 cut(s) | 1702, 2773 |
| PspPPI | RGGWCCY | 1 cut(s) | 1067 |
| PstNI | CAGNNNCTG | 2 cut(s) | 890, 2080 |
| PsuI | RGATCY | 3 cut(s) | 2076, 2084, 3229 |
| PvuII | CAGCTG | 2 cut(s) | 202, 2435 |
| RseI | CAYNNNNRTG | 4 cut(s) | 909, 1164, 1453, 1742 |
| SacI | GAGCTC | 1 cut(s) | 1696 |
| SapI | GCTCTTC | 1 cut(s) | 1473 |
| SaqAI | TTAA | 9 cut(s) | 986, 1764, 1965, 1995, 2225, 2445, 2568, 3039, 3403 |
| SchI | GAGTC | 4 cut(s) | 514, 3067, 3103, 3121 |
| SduI | GDGCHC | 6 cut(s) | 380, 1228, 1696, 1706, 2777, 3176 |
| SexAI | ACCWGGT | 1 cut(s) | 1153 |
| SfcI | CTRYAG | 1 cut(s) | 3001 |
| SfuI | TTCGAA | 1 cut(s) | 3025 |
| SinI | GGWCC | 7 cut(s) | 23, 771, 937, 1067, 2858, 3105, 3129 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 909, 1164, 1453, 1742 |
| SmlI | CTYRAG | 1 cut(s) | 2202 |
| SmoI | CTYRAG | 1 cut(s) | 2202 |
| SpeI | ACTAGT | 1 cut(s) | 1286 |
| SphI | GCATGC | 2 cut(s) | 2713, 2746 |
| SseBI | AGGCCT | 2 cut(s) | 556, 1273 |
| SspI | AATATT | 2 cut(s) | 1984, 2256 |
| SspMI | CTAG | 5 cut(s) | 918, 1287, 1662, 2778, 3356 |
| SstI | GAGCTC | 1 cut(s) | 1696 |
| StuI | AGGCCT | 2 cut(s) | 556, 1273 |
| StyI | CCWWGG | 2 cut(s) | 580, 2777 |
| TaiI | ACGT | 9 cut(s) | 1679, 2034, 2155, 2274, 2506, 2587, 2944, 3208, 3281 |
| TaqI | TCGA | 3 cut(s) | 1834, 3025, 3061 |
| TatI | WGTACW | 5 cut(s) | 781, 1206, 1816, 1911, 1972 |
| TauI | GCSGC | 4 cut(s) | 2709, 2799, 3069, 3202 |
| TfiI | GAWTC | 8 cut(s) | 109, 349, 757, 1408, 2533, 2552, 2591, 3242 |
| Tru1I | TTAA | 9 cut(s) | 986, 1764, 1965, 1995, 2225, 2445, 2568, 3039, 3403 |
| Tru9I | TTAA | 9 cut(s) | 986, 1764, 1965, 1995, 2225, 2445, 2568, 3039, 3403 |
| TscAI | CASTG | 5 cut(s) | 639, 1384, 2272, 2902, 3342 |
| TseFI | GTSAC | 4 cut(s) | 513, 869, 1340, 3134 |
| Tsp45I | GTSAC | 4 cut(s) | 513, 869, 1340, 3134 |
| TspGWI | ACGGA | 3 cut(s) | 51, 516, 1856 |
| TspRI | CASTG | 5 cut(s) | 639, 1384, 2272, 2902, 3342 |
| VpaK11BI | GGWCC | 7 cut(s) | 23, 771, 937, 1067, 2858, 3105, 3129 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 579 |
| XapI | RAATTY | 2 cut(s) | 1646, 3215 |
| XceI | RCATGY | 3 cut(s) | 850, 2713, 2746 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 199, 1019 |
| XmaJI | CCTAGG | 1 cut(s) | 2777 |
| XspI | CTAG | 5 cut(s) | 918, 1287, 1662, 2778, 3356 |
| Zsp2I | ATGCAT | 3 cut(s) | 525, 549, 1200 |