Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003731

Physical Location & Seq

Genomic Coordinates Forward (+)

9382588 .. 9384692

Gene Structure 2105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAACCTTTGAGCTTTCTCAGTAAGGTTCAAGACAAGAATCAATCTGAGGACCTAGAGACAATGCATATAAGTCATGCTAAGGAGCCTGATGCGGATATTGACCTGGGAGAAGTGTATTTTCTTATTATGCATTTTCTGTCTGCTGGACCATGCCACAGAACTTGTGGACAGTTGTGGAACGAACTTCTTGAACATCAACTTTTACCTAGAAGATATCATGCTTGGTATTCAAGAAAGGGCATCCACAGTGGGGATGAAAATGAAGATGGGAAATCATTTCCATTAAATTACAACATGCTGGTGCACAGGTATCCTCACATTGAAAATGATCATTTGGTAAAGCTTTTGAAGCAATTGATTTCAAGTGCAGCCCCACCATCGAGGGGTATGAGTGGTGGAAATGCTCCAAATGCAGCTGATGTGCCTACTCTCTTGGGACTTGGTTCATTTTCACTTCTGACCTATGAAAGGGATCAAGTGCACAATGAAATGAAGACCCCTCCTCCTCACATGCGTTGGCCTCACATGAAATCTCATCAGGTTCAAGGGCTACGGTTGAGAGAAATTGGGGGAGGTTTCACCCGACATCATCGTGCTCCGTCTATTCGTGCTGCATCCTATGCCATTGCAAAGCCCTCGACCATGTTTGAGAAGATGCAATTTACCAAGAGGCTAAGGGGCCATCGAAACTCTGTCTACTGTGGCAGCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008360 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019221 GO:0019222 GO:0022603 GO:0022604 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0034097 GO:0038111 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071840 GO:0080090 GO:0098760 GO:0098761 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp Bromodomain WD40

Protein Analysis

240

Amino Acids

27.24

Weight (kDa)

9.24

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRWD1_N	PF25437	24 - 123	1.6e-35	BRWD1-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49430 AT5G49430
fragaria_vesca	FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490 FvH4_4g19490
malus_domestica	MD13G1156100.v1.1 MD16G1157000.v1.1
prunus_persica	Prupe.1G121900_v2.0.a1 Prupe.1G121900_v2.0.a1
pyrus_communis	pycom13g13310 pycom13g13320 pycom13g13330 pycom13g13340 pycom13g13350 pycom16g13190 pycom16g13200
rosa_chinensis	RchiOBHm_Chr4g0424601
rosa_laevigata	RLG00000007452
rosa_multiflora	Rmu_co8472673.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366520
rosa_rugosa	Rorug04G0198100 Rorug04G0198200 Rorug04G0198300
rosa_samantha	Rh4AG254900 Rh4BG260400 Rh4CG271900 Rh4DG255100
rosa_wichuraiana	Rw4G022040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	253, 386, 471
AgsI	TTSAA	7 cut(s)	32, 194, 234, 326, 352, 366, 548
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	3 cut(s)	15, 346, 419
AluI	AGCT	3 cut(s)	15, 346, 419
Alw21I	GWGCWC	3 cut(s)	309, 486, 601
Alw26I	GTCTC	1 cut(s)	53
Alw44I	GTGCAC	2 cut(s)	305, 482
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	2 cut(s)	521, 682
ApaLI	GTGCAC	2 cut(s)	305, 482
ApeKI	GCWGC	4 cut(s)	371, 416, 614, 708
AspS9I	GGNCC	3 cut(s)	52, 149, 682
AsuHPI	GGTGA	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	52, 149
BaeGI	GKGCMC	2 cut(s)	309, 486
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	3 cut(s)	309, 486, 601
BbvI	GCAGC	3 cut(s)	383, 428, 601
BccI	CCATC	3 cut(s)	263, 388, 693
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	324
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	56, 210
BfuI	GTATCC	1 cut(s)	324
BisI	GCNGC	4 cut(s)	372, 417, 615, 709
BlsI	GCNGC	4 cut(s)	373, 418, 616, 710
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	2 cut(s)	52, 149
BmgT120I	GGNCC	3 cut(s)	52, 149, 682
BmiI	GGNNCC	2 cut(s)	87, 683
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	82, 252, 626, 648
BpiI	GAAGAC	1 cut(s)	503
Bpu10I	CCTNAGC	2 cut(s)	81, 677
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 386, 471
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	3 cut(s)	243, 262, 617
BseLI	CCNNNNNNNGG	3 cut(s)	253, 386, 471
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	34, 39
BseRI	GAGGAG	2 cut(s)	495, 498
BseSI	GKGCMC	2 cut(s)	309, 486
BseXI	GCAGC	3 cut(s)	383, 428, 601
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	523, 684
BsiHKAI	GWGCWC	3 cut(s)	309, 486, 601
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	3 cut(s)	253, 386, 471
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	523, 684
Bsp1286I	GDGCHC	3 cut(s)	309, 486, 601
Bsp143I	GATC	2 cut(s)	331, 475
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	523, 684
BspCNI	CTCAG	2 cut(s)	33, 40
BspLI	GGNNCC	2 cut(s)	87, 683
BspPI	GGATC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	627
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	331, 475
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	4 cut(s)	174, 251, 558, 704
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstDEI	CTNAG	4 cut(s)	20, 48, 81, 677
BstENI	CCTNNNNNAGG	1 cut(s)	469
BstF5I	GGATG	3 cut(s)	243, 262, 617
BstKTI	GATC	2 cut(s)	334, 478
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	331, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 413, 623
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	2 cut(s)	301, 517
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	2 cut(s)	309, 486
BstV1I	GCAGC	3 cut(s)	383, 428, 601
BstV2I	GAAGAC	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	523, 684
BtsCI	GGATG	3 cut(s)	243, 262, 617
BtsIMutI	CAGTG	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	52, 149, 682
CspCI	CAANNNNNGTGG	2 cut(s)	146, 181
CviAII	CATG	7 cut(s)	77, 153, 221, 298, 514, 529, 646
DdeI	CTNAG	4 cut(s)	20, 48, 81, 677
DpnI	GATC	2 cut(s)	333, 477
DpnII	GATC	2 cut(s)	331, 475
Eco32I	GATATC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	52, 149
EcoNI	CCTNNNNNAGG	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	218
EcoT22I	ATGCAT	2 cut(s)	69, 135
FaeI	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	7 cut(s)	76, 152, 220, 297, 513, 528, 645
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	4 cut(s)	372, 417, 615, 709
FokI	GGATG	3 cut(s)	230, 269, 604
Fsp4HI	GCNGC	4 cut(s)	372, 417, 615, 709
FspBI	CTAG	2 cut(s)	56, 210
GluI	GCNGC	4 cut(s)	372, 417, 615, 709
HaeIII	GGCC	2 cut(s)	523, 684
Hin1II	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	4 cut(s)	170, 307, 484, 700
Hpy188I	TCNGA	2 cut(s)	49, 462
Hpy188III	TCNNGA	3 cut(s)	32, 191, 234
Hpy8I	GTNNAC	4 cut(s)	170, 307, 484, 700
HpyCH4III	ACNGT	4 cut(s)	174, 251, 558, 704
HpyCH4V	TGCA	9 cut(s)	67, 133, 307, 371, 416, 484, 617, 632, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 413, 623
HpyF3I	CTNAG	4 cut(s)	20, 48, 81, 677
Hsp92II	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	331, 475
LmnI	GCTCC	3 cut(s)	85, 412, 604
LpnPI	CCDG	7 cut(s)	92, 102, 119, 132, 287, 295, 527
Lsp1109I	GCAGC	3 cut(s)	383, 428, 601
LweI	GCATC	4 cut(s)	82, 252, 626, 648
MaeI	CTAG	2 cut(s)	56, 210
MalI	GATC	2 cut(s)	333, 477
MboI	GATC	2 cut(s)	331, 475
MboII	GAAGA	4 cut(s)	225, 278, 508, 667
MfeI	CAATTG	1 cut(s)	356
MhlI	GDGCHC	3 cut(s)	309, 486, 601
MluCI	AATT	4 cut(s)	289, 356, 567, 662
Mph1103I	ATGCAT	2 cut(s)	69, 135
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	2 cut(s)	302, 594
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	352, 413, 623
NdeII	GATC	2 cut(s)	331, 475
NlaIII	CATG	7 cut(s)	80, 156, 224, 301, 517, 532, 649
NlaIV	GGNNCC	2 cut(s)	87, 683
NsiI	ATGCAT	2 cut(s)	69, 135
NspI	RCATGY	2 cut(s)	301, 517
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	373, 418, 616, 710
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	87, 683
PspPI	GGNCC	3 cut(s)	52, 149, 682
PspPPI	RGGWCCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	302, 594
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	372, 417, 615, 709
Sau3AI	GATC	2 cut(s)	331, 475
Sau96I	GGNCC	3 cut(s)	52, 149, 682
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	3 cut(s)	309, 486, 601
SfaNI	GCATC	4 cut(s)	82, 252, 626, 648
SinI	GGWCC	2 cut(s)	52, 149
SmiMI	CAYNNNNRTG	2 cut(s)	302, 594
Sse9I	AATT	4 cut(s)	289, 356, 567, 662
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	2 cut(s)	56, 210
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	174, 251, 558, 704
TaqI	TCGA	3 cut(s)	383, 641, 688
TasI	AATT	4 cut(s)	289, 356, 567, 662
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	4 cut(s)	371, 416, 614, 708
TspDTI	ATGAA	8 cut(s)	17, 273, 279, 438, 483, 504, 509, 545
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	1 cut(s)	256
VneI	GTGCAC	2 cut(s)	305, 482
VpaK11BI	GGWCC	2 cut(s)	52, 149
XagI	CCTNNNNNAGG	1 cut(s)	469
XceI	RCATGY	2 cut(s)	301, 517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	2 cut(s)	56, 210
Zsp2I	ATGCAT	2 cut(s)	69, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.