Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Reverse (-)

12369499 .. 12372875

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGAGAAGCTTTGTTCGAGCTGGAGCAACATCTCAGGTACAAACAGGTCAAATTGACCCCTGAAGAAATTAAGCTTCTTTTTACGTGCAAGTCCAAAGCTGTCAGGGAGTTTACGTTCGGAGGTCTTGCTGCTGCTACCGTTGCCTGGACAGCATCAAAGAAGCTGAATAAGTTTGTTCGACTTAACCTTTCAGGAGGAGCTGCTGCTATATTTGGACTATGGATCTTCTCGAGGTCCTTAAACTCATGTGTTGACCATATTCTTTCTCAGGATGGAAGTCGATTGCAGGCAGAGTTAGCAACTATAATGGTGAAAAAGTATCAGAATGATCCTTCTATGATGCGGCTTATCTCTAAACAGTTCTACTCTGAGAAAGTTTTTGATGATGCGAACTCAGATCAACCAACACTGAGGTGGCGTTATCGGAATTATTTTAGTGATAACATTACCCATGGTCGAAGAACAGATTACAGCGACCCTCAAGGTGATTCAGAACAGGCTTCCCATGGCGACCATCAGAGTGCTTCTGACAGTGATTCCCGGAACATCCAGAATGACTCCGACAAAAAACGTTTTGCTCCTAAACAAGTTCCTATGAACTCTAATGTTGATTCAATGGTCGACCCTTTTGATTGTGTGTTTGGTAATACAAGCAGCGAGGAGATTCTTCTTCCAAGTACCTCTAGCACTGACAGTCCCACAAAAGTACGTACTCATAAACATAGAAGATCTCACCGTAGGCGTCGTATGCACCATGAGGAAGACGTACTAAAAATGCAACACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

30.15

Weight (kDa)

9.05

Isoelectric Point (pI)

69.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	1 cut(s)	346
AclI	AACGTT	1 cut(s)	574
AclWI	GGATC	2 cut(s)	233, 326
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	745
AfaI	GTAC	5 cut(s)	41, 682, 711, 715, 771
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	1 cut(s)	618
AjnI	CCWGG	1 cut(s)	146
AleI	CACNNNNGTG	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	6 cut(s)	11, 22, 76, 101, 166, 203
AluI	AGCT	6 cut(s)	11, 22, 76, 101, 166, 203
AlwI	GGATC	2 cut(s)	233, 326
Ama87I	CYCGRG	1 cut(s)	232
ApeKI	GCWGC	5 cut(s)	131, 134, 203, 206, 657
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	3 cut(s)	325, 500, 728
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	771
BbvI	GCAGC	5 cut(s)	118, 121, 190, 193, 669
BccI	CCATC	2 cut(s)	269, 525
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	544
BfaI	CTAG	1 cut(s)	687
BglII	AGATCT	1 cut(s)	731
BisI	GCNGC	6 cut(s)	132, 135, 204, 207, 347, 658
BlsI	GCNGC	6 cut(s)	133, 136, 205, 208, 348, 659
Bme1390I	CCNGG	2 cut(s)	148, 544
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	148, 544
BmsI	GCATC	3 cut(s)	164, 333, 379
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	544
BsaAI	YACGTR	2 cut(s)	87, 713
BsaHI	GRCGYC	1 cut(s)	745
BsaJI	CCNNGG	2 cut(s)	454, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	454, 508
BseGI	GGATG	2 cut(s)	280, 549
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	5 cut(s)	49, 284, 363, 404, 411
BseRI	GAGGAG	2 cut(s)	213, 677
BseXI	GCAGC	5 cut(s)	118, 121, 190, 193, 669
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	225, 331, 400, 731
Bsp19I	CCATGG	2 cut(s)	454, 508
BspACI	CCGC	1 cut(s)	346
BspCNI	CTCAG	5 cut(s)	48, 283, 364, 405, 410
BspPI	GGATC	2 cut(s)	233, 326
BssECI	CCNNGG	2 cut(s)	454, 508
BssMI	GATC	4 cut(s)	225, 331, 400, 731
BssNI	GRCGYC	1 cut(s)	745
BssT1I	CCWWGG	2 cut(s)	454, 508
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	5 cut(s)	142, 363, 536, 698, 740
BstACI	GRCGYC	1 cut(s)	745
BstBAI	YACGTR	2 cut(s)	87, 713
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	5 cut(s)	35, 270, 372, 397, 413
BstDSI	CCRYGG	2 cut(s)	454, 508
BstF5I	GGATG	2 cut(s)	280, 549
BstKTI	GATC	4 cut(s)	228, 334, 403, 734
BstMBI	GATC	4 cut(s)	225, 331, 400, 731
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 152, 299, 751
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	2 cut(s)	146, 542
BstSNI	TACGTA	1 cut(s)	713
BstV1I	GCAGC	5 cut(s)	118, 121, 190, 193, 669
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	2 cut(s)	225, 731
BstYI	RGATCY	2 cut(s)	225, 731
BtgI	CCRYGG	2 cut(s)	454, 508
BtsCI	GGATG	2 cut(s)	280, 549
BtsIMutI	CAGTG	3 cut(s)	410, 541, 690
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	5 cut(s)	40, 681, 710, 714, 770
CviAII	CATG	5 cut(s)	249, 455, 509, 758, 787
CviJI	RGCY	8 cut(s)	11, 22, 76, 101, 166, 203, 349, 503
CviKI_1	RGCY	8 cut(s)	11, 22, 76, 101, 166, 203, 349, 503
CviQI	GTAC	5 cut(s)	40, 681, 710, 714, 770
DdeI	CTNAG	5 cut(s)	35, 270, 372, 397, 413
DpnI	GATC	4 cut(s)	227, 333, 402, 733
DpnII	GATC	4 cut(s)	225, 331, 400, 731
Eco105I	TACGTA	1 cut(s)	713
Eco130I	CCWWGG	2 cut(s)	454, 508
Eco47I	GGWCC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	454, 508
ErhI	CCWWGG	2 cut(s)	454, 508
FaeI	CATG	5 cut(s)	252, 458, 512, 761, 790
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	5 cut(s)	248, 454, 508, 757, 786
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	6 cut(s)	132, 135, 204, 207, 347, 658
FokI	GGATG	2 cut(s)	287, 536
Fsp4HI	GCNGC	6 cut(s)	132, 135, 204, 207, 347, 658
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	6 cut(s)	132, 135, 204, 207, 347, 658
GsuI	CTGGAG	1 cut(s)	44
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	745
Hin1II	CATG	5 cut(s)	252, 458, 512, 761, 790
HincII	GTYRAC	2 cut(s)	256, 625
HindII	GTYRAC	2 cut(s)	256, 625
HindIII	AAGCTT	2 cut(s)	9, 74
HinfI	GANTC	5 cut(s)	491, 539, 560, 614, 667
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	3 cut(s)	325, 500, 728
Hpy166II	GTNNAC	3 cut(s)	114, 256, 625
Hpy188I	TCNGA	9 cut(s)	122, 327, 373, 400, 429, 496, 522, 532, 565
Hpy188III	TCNNGA	4 cut(s)	195, 232, 272, 553
Hpy8I	GTNNAC	3 cut(s)	114, 256, 625
Hpy99I	CGWCG	1 cut(s)	750
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	5 cut(s)	142, 363, 536, 698, 740
HpyCH4IV	ACGT	5 cut(s)	86, 116, 574, 712, 768
HpyCH4V	TGCA	4 cut(s)	90, 289, 754, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 152, 299, 751
HpyF3I	CTNAG	5 cut(s)	35, 270, 372, 397, 413
HpySE526I	ACGT	5 cut(s)	86, 116, 574, 712, 768
Hsp92I	GRCGYC	1 cut(s)	745
Hsp92II	CATG	5 cut(s)	252, 458, 512, 761, 790
Kzo9I	GATC	4 cut(s)	225, 331, 400, 731
LmnI	GCTCC	3 cut(s)	25, 200, 586
Lsp1109I	GCAGC	5 cut(s)	118, 121, 190, 193, 669
LweI	GCATC	3 cut(s)	164, 333, 379
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	5 cut(s)	86, 116, 574, 712, 768
MalI	GATC	4 cut(s)	227, 333, 402, 733
MboI	GATC	4 cut(s)	225, 331, 400, 731
MboII	GAAGA	7 cut(s)	77, 220, 474, 662, 665, 741, 776
MflI	RGATCY	2 cut(s)	225, 731
MluCI	AATT	3 cut(s)	53, 69, 430
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	8 cut(s)	116, 191, 228, 408, 492, 655, 694, 754
MseI	TTAA	3 cut(s)	72, 186, 242
MslI	CAYNNNNRTG	2 cut(s)	415, 522
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	148, 544
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	4 cut(s)	143, 152, 299, 751
NciI	CCSGG	1 cut(s)	544
NcoI	CCATGG	2 cut(s)	454, 508
NdeII	GATC	4 cut(s)	225, 331, 400, 731
NlaIII	CATG	5 cut(s)	252, 458, 512, 761, 790
NspI	RCATGY	1 cut(s)	790
OliI	CACNNNNGTG	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	232
PciI	ACATGT	1 cut(s)	786
PfeI	GAWTC	4 cut(s)	491, 539, 614, 667
PfoI	TCCNGGA	1 cut(s)	542
PkrI	GCNGC	6 cut(s)	133, 136, 205, 208, 348, 659
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Ppu21I	YACGTR	2 cut(s)	87, 713
PpuMI	RGGWCCY	1 cut(s)	237
PscI	ACATGT	1 cut(s)	786
Psp1406I	AACGTT	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	237
PspPPI	RGGWCCY	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	225, 731
RsaI	GTAC	5 cut(s)	41, 682, 711, 715, 771
RsaNI	GTAC	5 cut(s)	40, 681, 710, 714, 770
RseI	CAYNNNNRTG	2 cut(s)	415, 522
SalI	GTCGAC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	72, 186, 242
SatI	GCNGC	6 cut(s)	132, 135, 204, 207, 347, 658
Sau3AI	GATC	4 cut(s)	225, 331, 400, 731
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	148, 544
SfaNI	GCATC	3 cut(s)	164, 333, 379
Sfr274I	CTCGAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	415, 522
SmlI	CTYRAG	2 cut(s)	232, 483
SmoI	CTYRAG	2 cut(s)	232, 483
SnaBI	TACGTA	1 cut(s)	713
Sse9I	AATT	3 cut(s)	53, 69, 430
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	146, 542
StyI	CCWWGG	2 cut(s)	454, 508
TaaI	ACNGT	5 cut(s)	142, 363, 536, 698, 740
TaiI	ACGT	5 cut(s)	89, 119, 577, 715, 771
TaqI	TCGA	6 cut(s)	18, 181, 233, 283, 460, 624
TasI	AATT	3 cut(s)	53, 69, 430
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	4 cut(s)	491, 539, 614, 667
Tru1I	TTAA	3 cut(s)	72, 186, 242
Tru9I	TTAA	3 cut(s)	72, 186, 242
TscAI	CASTG	3 cut(s)	417, 541, 697
TseI	GCWGC	5 cut(s)	131, 134, 203, 206, 657
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	3 cut(s)	417, 541, 697
VpaK11BI	GGWCC	1 cut(s)	237
XceI	RCATGY	1 cut(s)	790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.