Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003585

Physical Location & Seq

Genomic Coordinates Forward (+)

15799933 .. 15801131

Gene Structure 1199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGATACCCGAAGGTGAAGGTCAGGCAACAAGAAGACCAGGATGATCATCAACCCCTCACTGATTTTTGCTTTCCAGAGAAGGAGCACGAAGAGTCTCCGCCCACTGTTGCGAGAATTCCTGAATCTTATGTCCCGAGTGTAGTGATGCCATCAATATCTGTAACTGAAGGAGAAACGAAAGACGACAAAGTTGAAGAGGAAATCAAACAAAATATTAGAGCCAGCTCAATCCCTAGGCCGCGCGCTGTCTTATCAAGTCCAGGTAATTTTTCTTCCTTGCTTATCTCTATCGAGGTGTTTTGCAATGAGGCTTTTCTTGTTTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

4.67

Isoelectric Point (pI)

65.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21865
fragaria_vesca	FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630 FvH4_4g04630
malus_domestica	MD16G1226400.v1.1
prunus_persica	Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1 Prupe.1G048400_v2.0.a1
pyrus_communis	pycom16g18960
rosa_chinensis	RchiOBHm_Chr1g0362101 RchiOBHm_Chr4g0395401
rosa_laevigata	RLG00000009625
rosa_multiflora	Rmu_sc0004598.1_g000001 Rmu_sc0010817.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340360
rosa_rugosa	Rorug01G0293700 Rorug03G0357600
rosa_samantha	Rh1AG304400 Rh2BG188400 Rh4AG059600 Rh4BG058100 Rh4CG063600 Rh4DG054700 Rh6AG105300 Rh7AG389000 Rh7CG408200 Rh7DG387000
rosa_wichuraiana	Rw0G003300 Rw0G007660 Rw4G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	244, 246
AciI	CCGC	2 cut(s)	101, 242
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	39, 262
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	117
AspA2I	CCTAGG	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	246, 248
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	136
AvrII	CCTAGG	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	259, 291
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	41, 264
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	242
BlnI	CCTAGG	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	41, 264
BmeT110I	CYCGRG	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	41, 264
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	41, 264
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	313
BsePI	GCGCGC	1 cut(s)	244
Bsh1236I	CGCG	2 cut(s)	244, 246
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	101, 242
BspANI	GGCC	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	244, 246
BsrDI	GCAATG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	236
BssHII	GCGCGC	1 cut(s)	244
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	41, 264
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	87, 192
BstC8I	GCNNGC	2 cut(s)	226, 246
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	2 cut(s)	244, 246
BstHHI	GCGC	2 cut(s)	246, 248
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	41, 264
BstSCI	CCNGG	2 cut(s)	39, 262
BstUI	CGCG	2 cut(s)	244, 246
BstV2I	GAAGAC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	60, 105
Cac8I	GCNNGC	2 cut(s)	226, 246
CfoI	GCGC	2 cut(s)	246, 248
CviJI	RGCY	4 cut(s)	224, 228, 241, 314
CviKI_1	RGCY	4 cut(s)	224, 228, 241, 314
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	87, 192
EarI	CTCTTC	2 cut(s)	87, 192
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	39, 262
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
FaiI	YATR	1 cut(s)	132
FaqI	GGGAC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	2 cut(s)	245, 247
GluI	GCNGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	246, 248
Hin6I	GCGC	2 cut(s)	244, 246
HinP1I	GCGC	2 cut(s)	244, 246
HinfI	GANTC	2 cut(s)	95, 125
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188III	TCNNGA	3 cut(s)	77, 122, 136
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	7, 13, 76, 164
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	306
HspAI	GCGC	2 cut(s)	244, 246
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	8 cut(s)	10, 26, 53, 90, 135, 238, 249, 276
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	4 cut(s)	47, 104, 209, 267
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	117, 268
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	68, 193, 289, 304
MseI	TTAA	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	41, 264
MvaI	CCWGG	2 cut(s)	41, 264
MvnI	CGCG	2 cut(s)	244, 246
NdeII	GATC	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	39, 262
PspGI	CCWGG	2 cut(s)	39, 262
PteI	GCGCGC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	41, 264
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	5 cut(s)	18, 24, 230, 268, 300
SfaNI	GCATC	1 cut(s)	138
Sse9I	AATT	2 cut(s)	117, 268
SsiI	CCGC	2 cut(s)	101, 242
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	39, 262
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	117, 268
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	2 cut(s)	67, 112
TspRI	CASTG	2 cut(s)	67, 112
XapI	RAATTY	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.