Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003202

Physical Location & Seq

Genomic Coordinates Reverse (-)

17881478 .. 17884662

Gene Structure 3185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCTCCTTATGAAATTACTGAGCAATTCATGGGCAAGCTCTTTAGTGAGCATAAGATTGACTATATCATACATGGTGATCGATCCTTGCCTGCTGCCAGATGGAACTGATGCTTATGCCTTGGCGAAAAAAGCTGGCCGCTACAAGCAGATTAAACGCACTGAAGGTGTCTCCAGCACAGATATTGTAGGGAGGATACTTTCTTCTTTAAAGGATACAAATGATGGTGAAAATCAAACTGAGACATCCTTGCATAAAACCCCAGAAAGTCAACCCAAGAGTGCCAGTTTATCTCAATTTCTACCAACATCCCGGCGTATTGTGCAATTCTCTAATGGAAAGGGACCTGGACCAAATGCTCGTGTTGTTTACATTGATGGGGCATTTGATCTCTTTCATGCAGGACATGTTGAGATTCTGAAGAATGCTAGGCAGCTCGGAGACTTTCTACTAGTGGGCATCCACAATGATGAGACTGTCAGTGAACACAGAGGGAAGTATCCAATTATGCATTTGCACGAACGTAGTCTTAGTGTGTTGGGTTGCCGTTATGTTGATGAAGTCATCATTGGTGCTCCCTGGGAAGTTACCGTGGACATGATAACAACTTTCAACATTTCATCGGTTGTGCATGGGACAGTTTCCGAGTACAACTTCTCGTTAACTGGCGAAAGCGATCCTTATTCTGTTCCCAAGAGCATGGGGATTTTCAAATTGCTTGAAAGCCCTAAAAGTATAACAACAACATCAGTATCCCAGAGGATAATTGCAAATCATGATGCTTACTTGAAACGCAATGCCAAAAAGAACGAGAGCGAAAAGAAATACTATGCACAGAAGACATATGTCTCGGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

287

Amino Acids

31.69

Weight (kDa)

8.66

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	124 - 219	1.8e-17	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38670
fragaria_vesca	FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_4g06460 FvH4_6g09110
malus_domestica	MD04G1180800.v1.1 MD12G1196100.v1.1 MD13G1236200.v1.1 MD16G1241200.v1.1
prunus_persica	Prupe.1G067900_v2.0.a1 Prupe.1G067900_v2.0.a1 Prupe.6G300600_v2.0.a1
pyrus_communis	pycom04g15990 pycom13g20890 pycom16g20190
rosa_chinensis	RchiOBHm_Chr3g0459321 RchiOBHm_Chr4g0398251
rosa_laevigata	RLG00000009374 RLG00000025091
rosa_multiflora	Rmu_sc0006944.1_g000005 Rmu_ssc0000112.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343230 Rroxscaffold_6G00420270
rosa_rugosa	Rorug03G0035300 Rorug04G0007100 Rorug04G0007100 Rorug04G0007100
rosa_samantha	Rh3AG093300 Rh4AG084600 Rh4BG082000 Rh4CG092000 Rh4DG077100
rosa_wichuraiana	Rw3G008030 Rw4G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	77, 671
AcoI	YGGCCR	1 cut(s)	136
AcuI	CTGAAG	2 cut(s)	183, 440
AfaI	GTAC	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	613, 712, 722, 790
AhlI	ACTAGT	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	346, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AluBI	AGCT	3 cut(s)	39, 134, 436
AluI	AGCT	3 cut(s)	39, 134, 436
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	6 cut(s)	175, 236, 435, 467, 849, 853
AlwI	GGATC	2 cut(s)	77, 671
Ama87I	CYCGRG	1 cut(s)	850
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	94, 433
AspS9I	GGNCC	2 cut(s)	344, 350
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	88, 239
AvaI	CYCGRG	1 cut(s)	850
AvaII	GGWCC	2 cut(s)	344, 350
BaeI	ACNNNNGTAYC	2 cut(s)	735, 768
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	81, 445
BccI	CCATC	3 cut(s)	95, 218, 371
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	2 cut(s)	348, 580
BciVI	GTATCC	4 cut(s)	189, 208, 510, 763
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	6 cut(s)	175, 236, 435, 467, 849, 853
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	3 cut(s)	429, 452, 859
BfuI	GTATCC	4 cut(s)	189, 208, 510, 763
BisI	GCNGC	3 cut(s)	95, 139, 434
BlsI	GCNGC	3 cut(s)	96, 140, 435
Bme1390I	CCNGG	3 cut(s)	313, 348, 580
Bme18I	GGWCC	2 cut(s)	344, 350
BmeT110I	CYCGRG	1 cut(s)	850
BmgT120I	GGNCC	2 cut(s)	344, 350
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	3 cut(s)	313, 348, 580
BmsI	GCATC	3 cut(s)	100, 468, 769
BoxI	GACNNNNGTC	1 cut(s)	845
BpiI	GAAGAC	1 cut(s)	845
BpmI	CTGGAG	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	120, 578, 579, 591
Bse1I	ACTGG	2 cut(s)	285, 670
Bse3DI	GCAATG	1 cut(s)	802
BseBI	CCWGG	2 cut(s)	348, 580
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	4 cut(s)	120, 578, 579, 591
BseGI	GGATG	3 cut(s)	245, 308, 459
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	2 cut(s)	11, 231
BseNI	ACTGG	2 cut(s)	285, 670
BseXI	GCAGC	2 cut(s)	81, 445
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	850
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	2 cut(s)	357, 649
BsmAI	GTCTC	6 cut(s)	175, 236, 435, 467, 849, 853
BsmFI	GGGAC	2 cut(s)	357, 649
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	850
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	4 cut(s)	78, 82, 388, 676
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	12, 232
BspDI	ATCGAT	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	77, 671
BsrDI	GCAATG	1 cut(s)	802
BsrI	ACTGG	2 cut(s)	285, 670
BssECI	CCNNGG	4 cut(s)	120, 578, 579, 591
BssMI	GATC	4 cut(s)	78, 82, 388, 676
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	348, 580
Bst4CI	ACNGT	3 cut(s)	478, 592, 640
BstC8I	GCNNGC	3 cut(s)	37, 92, 136
BstDEI	CTNAG	3 cut(s)	20, 240, 530
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	3 cut(s)	245, 308, 459
BstKTI	GATC	4 cut(s)	81, 85, 391, 679
BstMAI	GTCTC	6 cut(s)	175, 236, 435, 467, 849, 853
BstMBI	GATC	4 cut(s)	78, 82, 388, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 322
BstNI	CCWGG	2 cut(s)	348, 580
BstNSI	RCATGY	1 cut(s)	410
BstPAI	GACNNNNGTC	1 cut(s)	845
BstSCI	CCNGG	3 cut(s)	311, 346, 578
BstV1I	GCAGC	2 cut(s)	81, 445
BstV2I	GAAGAC	1 cut(s)	845
BstXI	CCANNNNNNTGG	1 cut(s)	700
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	4 cut(s)	189, 208, 510, 763
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	245, 308, 459
BtsIMutI	CAGTG	2 cut(s)	159, 487
Cac8I	GCNNGC	3 cut(s)	37, 92, 136
CciI	TCATGA	1 cut(s)	775
Cfr13I	GGNCC	2 cut(s)	344, 350
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	8 cut(s)	30, 73, 398, 407, 598, 632, 700, 776
CviJI	RGCY	5 cut(s)	39, 134, 138, 436, 726
CviKI_1	RGCY	5 cut(s)	39, 134, 138, 436, 726
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	3 cut(s)	20, 240, 530
DpnI	GATC	4 cut(s)	80, 84, 390, 678
DpnII	GATC	4 cut(s)	78, 82, 388, 676
DraI	TTTAAA	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	344, 350
Eco57I	CTGAAG	2 cut(s)	183, 440
Eco88I	CYCGRG	1 cut(s)	850
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	346, 578
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	8 cut(s)	33, 76, 401, 410, 601, 635, 703, 779
FalI	AAGNNNNNCTT	2 cut(s)	664, 696
FaqI	GGGAC	2 cut(s)	357, 649
FatI	CATG	8 cut(s)	29, 72, 397, 406, 597, 631, 699, 775
FauNDI	CATATG	1 cut(s)	844
Fnu4HI	GCNGC	3 cut(s)	95, 139, 434
FokI	GGATG	3 cut(s)	232, 295, 446
Fsp4HI	GCNGC	3 cut(s)	95, 139, 434
FspBI	CTAG	3 cut(s)	429, 452, 859
GluI	GCNGC	3 cut(s)	95, 139, 434
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	8 cut(s)	33, 76, 401, 410, 601, 635, 703, 779
HincII	GTYRAC	2 cut(s)	272, 663
HindII	GTYRAC	2 cut(s)	272, 663
HinfI	GANTC	1 cut(s)	415
HpaI	GTTAAC	1 cut(s)	663
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	2 cut(s)	88, 239
Hpy166II	GTNNAC	5 cut(s)	272, 370, 485, 595, 663
Hpy188I	TCNGA	3 cut(s)	420, 440, 646
Hpy188III	TCNNGA	2 cut(s)	776, 852
Hpy8I	GTNNAC	5 cut(s)	272, 370, 485, 595, 663
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	478, 592, 640
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	8 cut(s)	253, 325, 401, 511, 517, 631, 770, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 322
HpyF3I	CTNAG	3 cut(s)	20, 240, 530
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	8 cut(s)	33, 76, 401, 410, 601, 635, 703, 779
KspAI	GTTAAC	1 cut(s)	663
Kzo9I	GATC	4 cut(s)	78, 82, 388, 676
LmnI	GCTCC	2 cut(s)	9, 580
Lsp1109I	GCAGC	2 cut(s)	81, 445
LweI	GCATC	3 cut(s)	100, 468, 769
MaeI	CTAG	3 cut(s)	429, 452, 859
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	4 cut(s)	80, 84, 390, 678
MboI	GATC	4 cut(s)	78, 82, 388, 676
MboII	GAAGA	3 cut(s)	195, 433, 850
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	7 cut(s)	14, 25, 296, 326, 504, 713, 765
MnlI	CCTC	3 cut(s)	186, 485, 753
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	3 cut(s)	153, 209, 662
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	3 cut(s)	313, 348, 580
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	348, 580
MwoI	GCNNNNNNNGC	2 cut(s)	131, 322
NciI	CCSGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	4 cut(s)	78, 82, 388, 676
NlaIII	CATG	8 cut(s)	33, 76, 401, 410, 601, 635, 703, 779
NlaIV	GGNNCC	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	775
PasI	CCCWGGG	1 cut(s)	579
PciI	ACATGT	1 cut(s)	406
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	96, 140, 435
PpuMI	RGGWCCY	1 cut(s)	344
PscI	ACATGT	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	346, 578
PspGI	CCWGG	2 cut(s)	346, 578
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	344, 350
PspPPI	RGGWCCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	153, 209, 662
SatI	GCNGC	3 cut(s)	95, 139, 434
Sau3AI	GATC	4 cut(s)	78, 82, 388, 676
Sau96I	GGNCC	2 cut(s)	344, 350
ScrFI	CCNGG	3 cut(s)	313, 348, 580
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	6 cut(s)	41, 136, 169, 349, 438, 526
SfaNI	GCATC	3 cut(s)	100, 468, 769
SinI	GGWCC	2 cut(s)	344, 350
SmiMI	CAYNNNNRTG	1 cut(s)	468
SpeI	ACTAGT	1 cut(s)	451
Sse9I	AATT	7 cut(s)	14, 25, 296, 326, 504, 713, 765
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	3 cut(s)	429, 452, 859
StyD4I	CCNGG	3 cut(s)	311, 346, 578
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	478, 592, 640
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	1 cut(s)	81
TasI	AATT	7 cut(s)	14, 25, 296, 326, 504, 713, 765
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	3 cut(s)	153, 209, 662
Tru9I	TTAA	3 cut(s)	153, 209, 662
TscAI	CASTG	2 cut(s)	166, 487
TseI	GCWGC	2 cut(s)	94, 433
TspDTI	ATGAA	5 cut(s)	18, 26, 386, 573, 609
TspRI	CASTG	2 cut(s)	166, 487
VpaK11BI	GGWCC	2 cut(s)	344, 350
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	3 cut(s)	429, 452, 859
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.