Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Forward (+)

2122969 .. 2125914

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATGGAGCCGGGGCGTCTTTTCTTTGACCCTTCGCCGTCGGCGGTTTGCCAGCAAGGTGGTGGTGGCAACATGTTGTTCCTCGGGAATCCTGATCACGTTTTTCGAGGGCCAAGATCCATGATGGGTTTGATGGATCAGGAGAACTCGAGGAGGCGACCTTTTTTCAGCTCCTCCTCGTCGCAGGACGAACTGTTCGACGAGGAATACTACGACGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTCCTGACCAGGTGCATATGCTGGAGAAGAGCTTTGAGACAGAGAACAAGCTGGAGCCGGAGCGGAAGACGCAGCTGGCCAAGAAGCTAGGCCTGCAGCCGAGACAGGTGGCCGTCTGGTTCCAGAACCGCCGCGCTCGGTGGAAGACCAAGCAGCTCGAGCGGGACTACGACCTTCTCAAATCTTCTTATGACACCCTTTTGTATACTTACGACTCCATCCTCAAGGAGAATCAGAAGCTCAAATCCGAGATGGTTTCCATAAACGAGAAGCTTGGAGGTAAAGAGGAGGCTAATAGCACAAAACCAGCAACATATGCAGGGGATGACCACGATGACGAGAAGCGTGGCCCTCTTCTTCCAGACGGTGATCAGATGACGGAGGTTGTTCCAATAACTAGTCTCCAGCACAGTTGCACCATCAAGGCGGAGGACCGCCTGAGCTCAGGGAGCGGAGGAAGTGCCGTGGTGGACGAAGCCGAAGGCCCTCAGCCTGTGGACAGCGGTGACTCCTATAATTTCCCAAACAACATCCATAACGACTATCCTCATGATCATGATACCCATCATCATCATCATCAATATGTGGTGCCACATCGATCATGTAGAACATCATCACAGCGGAGTCCACTCAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

297

Amino Acids

33.96

Weight (kDa)

6.02

Isoelectric Point (pI)

69.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	78 - 131	1.3e-18	Homeodomain
HALZ	PF02183	133 - 174	7.7e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	835
AccBSI	CCGCTC	3 cut(s)	310, 409, 699
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	1 cut(s)	381
AclWI	GGATC	2 cut(s)	111, 144
AcoI	YGGCCR	2 cut(s)	324, 357
AcyI	GRCGYC	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	72
AhlI	ACTAGT	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	255
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
Alw21I	GWGCWC	1 cut(s)	692
Alw26I	GTCTC	3 cut(s)	278, 343, 653
AlwI	GGATC	2 cut(s)	111, 144
Ama87I	CYCGRG	3 cut(s)	83, 148, 404
AoxI	GGCC	6 cut(s)	110, 324, 337, 357, 595, 730
ApeKI	GCWGC	5 cut(s)	220, 223, 319, 343, 400
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	2 cut(s)	240, 383
AspS9I	GGNCC	4 cut(s)	110, 596, 679, 731
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	626, 764
AvaI	CYCGRG	3 cut(s)	83, 148, 404
AvaII	GGWCC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	835
BanII	GRGCYC	1 cut(s)	692
BbsI	GAAGAC	2 cut(s)	320, 398
Bbv12I	GWGCWC	1 cut(s)	692
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	5 cut(s)	210, 232, 331, 355, 412
BccI	CCATC	6 cut(s)	118, 127, 473, 493, 674, 819
BceAI	ACGGC	3 cut(s)	22, 344, 695
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	3 cut(s)	94, 616, 799
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	3 cut(s)	278, 343, 653
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	2 cut(s)	335, 645
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	7 cut(s)	221, 224, 241, 320, 344, 379, 401
BlsI	GCNGC	7 cut(s)	222, 225, 242, 321, 345, 380, 402
Bme1390I	CCNGG	2 cut(s)	12, 257
Bme18I	GGWCC	1 cut(s)	679
BmeT110I	CYCGRG	3 cut(s)	83, 148, 404
BmgT120I	GGNCC	4 cut(s)	110, 596, 679, 731
BmiI	GGNNCC	4 cut(s)	9, 303, 368, 837
BmrFI	CCNGG	2 cut(s)	12, 257
BpiI	GAAGAC	2 cut(s)	320, 398
BpmI	CTGGAG	3 cut(s)	290, 320, 635
Bpu10I	CCTNAGC	3 cut(s)	686, 691, 735
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	810
BsaHI	GRCGYC	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	11, 82, 711
Bse8I	GATNNNNATC	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	844
BseDI	CCNNGG	3 cut(s)	11, 82, 711
BseGI	GGATG	3 cut(s)	465, 577, 777
BseJI	GATNNNNATC	1 cut(s)	810
BseMII	CTCAG	3 cut(s)	677, 705, 749
BseRI	GAGGAG	4 cut(s)	163, 166, 166, 548
BseXI	GCAGC	5 cut(s)	210, 232, 331, 355, 412
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	6 cut(s)	112, 326, 339, 359, 597, 732
BshNI	GGYRCC	1 cut(s)	835
BshVI	ATCGAT	1 cut(s)	844
BsiHKAI	GWGCWC	1 cut(s)	692
BsiHKCI	CYCGRG	3 cut(s)	83, 148, 404
BsiSI	CCGG	3 cut(s)	11, 227, 305
BslFI	GGGAC	1 cut(s)	425
BsmAI	GTCTC	3 cut(s)	278, 343, 653
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	6 cut(s)	112, 326, 339, 359, 597, 732
BsoBI	CYCGRG	3 cut(s)	83, 148, 404
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
BspANI	GGCC	6 cut(s)	112, 326, 339, 359, 597, 732
BspCNI	CTCAG	4 cut(s)	678, 704, 748, 891
BspDI	ATCGAT	1 cut(s)	844
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	2 cut(s)	796, 802
BspLI	GGNNCC	4 cut(s)	9, 303, 368, 837
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	2 cut(s)	111, 144
BspQI	GCTCTTC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	835
BsrBI	CCGCTC	3 cut(s)	310, 409, 699
BssECI	CCNNGG	3 cut(s)	11, 82, 711
BssMI	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
BssNAI	GTATAC	1 cut(s)	453
BssNI	GRCGYC	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	195, 614, 659
Bst6I	CTCTTC	2 cut(s)	269, 606
BstACI	GRCGYC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	53, 324, 341
BstDEI	CTNAG	4 cut(s)	686, 691, 735, 878
BstDSI	CCRYGG	1 cut(s)	711
BstF5I	GGATG	3 cut(s)	465, 577, 777
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	240, 383
BstKTI	GATC	6 cut(s)	97, 119, 139, 619, 802, 848
BstMAI	GTCTC	3 cut(s)	278, 343, 653
BstMBI	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
BstMWI	GCNNNNNNNGC	5 cut(s)	316, 340, 406, 563, 696
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	10, 255
BstSFI	CTRYAG	1 cut(s)	341
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	5 cut(s)	210, 232, 331, 355, 412
BstV2I	GAAGAC	2 cut(s)	320, 398
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	116
BstZ17I	GTATAC	1 cut(s)	453
Bsu15I	ATCGAT	1 cut(s)	844
BsuRI	GGCC	6 cut(s)	112, 326, 339, 359, 597, 732
BsuTUI	ATCGAT	1 cut(s)	844
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	3 cut(s)	465, 577, 777
Cac8I	GCNNGC	3 cut(s)	53, 324, 341
CciI	TCATGA	2 cut(s)	796, 802
CfoI	GCGC	2 cut(s)	240, 383
Cfr13I	GGNCC	4 cut(s)	110, 596, 679, 731
ClaI	ATCGAT	1 cut(s)	844
CseI	GACGC	2 cut(s)	5, 325
CsiI	ACCWGGT	1 cut(s)	255
CviAII	CATG	5 cut(s)	73, 121, 797, 803, 849
DdeI	CTNAG	4 cut(s)	686, 691, 735, 878
DpnI	GATC	6 cut(s)	96, 118, 138, 618, 801, 847
DpnII	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
EaeI	YGGCCR	2 cut(s)	324, 357
Eam1104I	CTCTTC	2 cut(s)	269, 606
EarI	CTCTTC	2 cut(s)	269, 606
EciI	GGCGGA	1 cut(s)	689
Ecl136II	GAGCTC	1 cut(s)	690
Eco147I	AGGCCT	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	690
Eco88I	CYCGRG	3 cut(s)	83, 148, 404
EcoICRI	GAGCTC	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	692
FaeI	CATG	5 cut(s)	76, 124, 800, 806, 852
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	5 cut(s)	72, 120, 796, 802, 848
FauI	CCCGC	1 cut(s)	402
FauNDI	CATATG	2 cut(s)	264, 562
FbaI	TGATCA	3 cut(s)	94, 616, 799
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	7 cut(s)	221, 224, 241, 320, 344, 379, 401
FokI	GGATG	3 cut(s)	452, 584, 764
FriOI	GRGCYC	1 cut(s)	692
Fsp4HI	GCNGC	7 cut(s)	221, 224, 241, 320, 344, 379, 401
FspBI	CTAG	2 cut(s)	335, 645
GlaI	GCGC	2 cut(s)	239, 382
GluI	GCNGC	7 cut(s)	221, 224, 241, 320, 344, 379, 401
GsuI	CTGGAG	3 cut(s)	290, 320, 635
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	6 cut(s)	112, 326, 339, 359, 597, 732
HapII	CCGG	3 cut(s)	11, 227, 305
HgaI	GACGC	2 cut(s)	5, 325
HhaI	GCGC	2 cut(s)	240, 383
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	5 cut(s)	76, 124, 800, 806, 852
Hin6I	GCGC	2 cut(s)	238, 381
HinP1I	GCGC	2 cut(s)	238, 381
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	5 cut(s)	88, 461, 478, 755, 871
HpaII	CCGG	3 cut(s)	11, 227, 305
HphI	GGTGA	2 cut(s)	626, 764
Hpy166II	GTNNAC	4 cut(s)	453, 718, 745, 875
Hpy188I	TCNGA	4 cut(s)	483, 496, 621, 881
Hpy188III	TCNNGA	8 cut(s)	85, 92, 140, 251, 370, 608, 797, 803
Hpy8I	GTNNAC	4 cut(s)	453, 718, 745, 875
Hpy99I	CGWCG	4 cut(s)	43, 184, 203, 218
HpyAV	CCTTC	3 cut(s)	42, 431, 722
HpyCH4III	ACNGT	3 cut(s)	195, 614, 659
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	262, 343, 566, 663
HpyF10VI	GCNNNNNNNGC	5 cut(s)	316, 340, 406, 563, 696
HpyF3I	CTNAG	4 cut(s)	686, 691, 735, 878
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	5 cut(s)	76, 124, 800, 806, 852
HspAI	GCGC	2 cut(s)	238, 381
Ksp22I	TGATCA	3 cut(s)	94, 616, 799
Kzo9I	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	5 cut(s)	7, 176, 301, 307, 696
Lsp1109I	GCAGC	5 cut(s)	210, 232, 331, 355, 412
MabI	ACCWGGT	1 cut(s)	255
MaeI	CTAG	2 cut(s)	335, 645
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	6 cut(s)	96, 118, 138, 618, 801, 847
MbiI	CCGCTC	3 cut(s)	310, 409, 699
MboI	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
MboII	GAAGA	7 cut(s)	244, 286, 325, 403, 423, 593, 596
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	692
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	1 cut(s)	763
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	3 cut(s)	455, 749, 880
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MslI	CAYNNNNRTG	2 cut(s)	801, 828
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	4 cut(s)	223, 322, 750, 868
MspI	CCGG	3 cut(s)	11, 227, 305
MspR9I	CCNGG	2 cut(s)	12, 257
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	316, 340, 406, 563, 696
NciI	CCSGG	1 cut(s)	12
NdeI	CATATG	2 cut(s)	264, 562
NdeII	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
NlaIII	CATG	5 cut(s)	76, 124, 800, 806, 852
NlaIV	GGNNCC	4 cut(s)	9, 303, 368, 837
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	752
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	2 cut(s)	148, 404
PagI	TCATGA	2 cut(s)	796, 802
PceI	AGGCCT	1 cut(s)	339
PciI	ACATGT	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	88, 478
PkrI	GCNGC	7 cut(s)	222, 225, 242, 321, 345, 380, 402
PleI	GAGTC	3 cut(s)	455, 749, 879
PpsI	GAGTC	3 cut(s)	455, 749, 879
PscI	ACATGT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	4 cut(s)	9, 303, 368, 837
PspPI	GGNCC	4 cut(s)	110, 596, 679, 731
PspXI	VCTCGAGB	2 cut(s)	148, 404
PstI	CTGCAG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	116
PvuII	CAGCTG	2 cut(s)	223, 322
RseI	CAYNNNNRTG	2 cut(s)	801, 828
SacI	GAGCTC	1 cut(s)	692
SapI	GCTCTTC	1 cut(s)	269
SatI	GCNGC	7 cut(s)	221, 224, 241, 320, 344, 379, 401
Sau3AI	GATC	6 cut(s)	94, 116, 136, 616, 799, 845
Sau96I	GGNCC	4 cut(s)	110, 596, 679, 731
SchI	GAGTC	3 cut(s)	455, 749, 880
ScrFI	CCNGG	2 cut(s)	12, 257
SduI	GDGCHC	1 cut(s)	692
SexAI	ACCWGGT	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	341
Sfr274I	CTCGAG	2 cut(s)	148, 404
SinI	GGWCC	1 cut(s)	679
SlaI	CTCGAG	2 cut(s)	148, 404
SmiMI	CAYNNNNRTG	2 cut(s)	801, 828
SmlI	CTYRAG	3 cut(s)	148, 404, 470
SmoI	CTYRAG	3 cut(s)	148, 404, 470
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	1 cut(s)	763
SseBI	AGGCCT	1 cut(s)	339
SspMI	CTAG	2 cut(s)	335, 645
SstI	GAGCTC	1 cut(s)	692
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	10, 255
TaaI	ACNGT	3 cut(s)	195, 614, 659
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	5 cut(s)	106, 149, 198, 405, 844
TasI	AATT	1 cut(s)	763
TauI	GCSGC	2 cut(s)	243, 381
TfiI	GAWTC	2 cut(s)	88, 478
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	5 cut(s)	220, 223, 319, 343, 400
Tsp45I	GTSAC	1 cut(s)	752
TspGWI	ACGGA	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	679
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XhoI	CTCGAG	2 cut(s)	148, 404
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	2 cut(s)	335, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.